Wall clock time and date at job start Tue Mar 31 2020 21:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99828 * 2 1 4 4 C 1.53005 * 109.46910 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47259 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46729 * 59.99650 * 5 4 3 7 7 C 1.52993 * 109.46792 * 300.00204 * 5 4 3 8 8 C 1.52992 * 109.47073 * 180.02562 * 5 4 3 9 9 N 1.46505 * 109.46986 * 179.97438 * 8 5 4 10 10 C 1.34778 * 120.00007 * 179.97438 * 9 8 5 11 11 O 1.21366 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.49309 * 119.99924 * 180.02562 * 10 9 8 13 13 O 1.21407 * 119.99668 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00138 * 180.02562 * 12 10 9 15 15 C 1.40296 * 120.00306 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.09771 * 359.96814 * 15 14 12 17 17 N 1.30874 * 108.37509 * 179.74082 * 16 15 14 18 18 N 1.40061 * 108.43445 * 0.44356 * 17 16 15 19 19 C 1.37294 * 126.05340 * 179.81771 * 18 17 16 20 20 H 1.07999 * 120.00339 * 173.75960 * 19 18 17 21 21 C 1.39009 * 120.00129 * 354.03394 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58773 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.58331 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.09925 * 179.97438 * 15 14 12 28 28 H 1.09002 * 109.46976 * 59.99974 * 1 2 3 29 29 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46965 * 299.99971 * 1 2 3 31 31 H 1.09004 * 109.47410 * 60.00149 * 3 2 1 32 32 H 1.08997 * 109.47535 * 300.00025 * 3 2 1 33 33 H 1.08993 * 109.47392 * 60.00070 * 4 3 2 34 34 H 1.09002 * 109.47159 * 299.99585 * 4 3 2 35 35 H 1.09007 * 109.46448 * 180.02562 * 6 5 4 36 36 H 1.08993 * 109.47111 * 300.00044 * 6 5 4 37 37 H 1.08994 * 109.47074 * 60.00649 * 6 5 4 38 38 H 1.09001 * 109.47261 * 299.99467 * 7 5 4 39 39 H 1.09002 * 109.47843 * 59.99734 * 7 5 4 40 40 H 1.09007 * 109.47259 * 179.97438 * 7 5 4 41 41 H 1.08993 * 109.47490 * 60.00059 * 8 5 4 42 42 H 1.09002 * 109.47247 * 299.99459 * 8 5 4 43 43 H 0.96997 * 120.00020 * 0.02562 * 9 8 5 44 44 H 0.97005 * 120.00018 * 359.97438 * 14 12 10 45 45 H 1.07996 * 125.81429 * 0.02869 * 16 15 14 46 46 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 47 47 H 1.07992 * 126.25470 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5824 0.0000 6 6 3.7067 3.3409 1.2499 7 6 3.7059 3.3424 -1.2485 8 6 5.6830 2.4615 -0.0013 9 7 6.2789 3.7999 -0.0013 10 6 7.6193 3.9408 -0.0018 11 8 8.3327 2.9589 -0.0028 12 6 8.2266 5.3048 -0.0012 13 8 7.5129 6.2869 -0.0008 14 7 9.5669 5.4457 -0.0023 15 6 10.1376 6.7273 -0.0023 16 6 9.4361 7.9472 -0.0019 17 7 10.3071 8.9240 0.0036 18 7 11.5936 8.3702 -0.0034 19 6 12.7746 9.0703 -0.0042 20 1 13.7136 8.5455 0.0918 21 6 12.7616 10.4553 -0.1229 22 7 11.6200 11.1033 -0.1237 23 14 14.3687 11.3943 -0.2810 24 1 14.6662 11.6281 -1.7169 25 1 14.2507 12.6987 0.4189 26 1 15.4668 10.6026 0.3295 27 6 11.4653 7.0119 -0.0028 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6439 -0.8908 34 1 3.8575 0.6436 0.8892 35 1 4.1498 4.3368 1.2501 36 1 2.6202 3.4269 1.2503 37 1 4.0287 2.7995 2.1394 38 1 4.0272 2.8021 -2.1390 39 1 2.6193 3.4285 -1.2482 40 1 4.1489 4.3384 -1.2479 41 1 6.0039 1.9214 -0.8919 42 1 6.0053 1.9200 0.8881 43 1 5.7088 4.5846 -0.0002 44 1 10.1371 4.6609 -0.0030 45 1 8.3619 8.0585 -0.0011 46 1 11.6109 12.0697 -0.2062 47 1 12.2723 6.2942 -0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320155213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:04 Heat of formation + Delta-G solvation = -40.313330 kcal Electronic energy + Delta-G solvation = -28476.989098 eV Core-core repulsion = 24276.049857 eV Total energy + Delta-G solvation = -4200.939241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60187 -39.70269 -39.00121 -37.99614 -37.34654 -34.68552 -33.75924 -33.11934 -30.33849 -29.95241 -28.18967 -27.70555 -27.37775 -26.69849 -25.29626 -24.10643 -22.72297 -21.03455 -20.36256 -19.53198 -19.21564 -18.16559 -17.47645 -16.85525 -16.47357 -16.42187 -15.86527 -15.66324 -15.49927 -15.13857 -14.90854 -14.88452 -14.20275 -14.09676 -13.97184 -13.77923 -13.57067 -13.46441 -13.06650 -12.99482 -12.43820 -12.39961 -12.16591 -11.78443 -11.75441 -11.73260 -11.58260 -11.32291 -11.24519 -11.19728 -11.11372 -10.87397 -10.85230 -10.55328 -10.29145 -10.02528 -9.28775 -9.23920 -9.13735 -8.88323 -8.13630 -6.78814 -6.61750 -4.28754 1.65650 2.57357 2.92769 3.03494 3.08627 3.31817 3.32602 3.71062 3.76043 3.99694 4.19794 4.32846 4.36491 4.49671 4.60358 4.70527 4.78840 4.91740 4.92706 4.96406 5.00790 5.02158 5.05747 5.24180 5.25242 5.34560 5.38318 5.52367 5.52672 5.60100 5.67625 5.69638 5.95867 5.97446 6.17600 6.19626 6.35485 6.73107 6.74959 6.88528 6.90821 7.15441 7.20826 7.75565 7.85229 8.09642 8.17646 8.47913 8.68644 9.30587 9.58929 10.34327 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042860 B = 0.001672 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.127588 B =16738.939185 C =17180.600962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.058 3.942 4 C -0.105 4.105 5 C -0.073 4.073 6 C -0.151 4.151 7 C -0.151 4.151 8 C 0.129 3.871 9 N -0.702 5.702 10 C 0.514 3.486 11 O -0.528 6.528 12 C 0.483 3.517 13 O -0.524 6.524 14 N -0.583 5.583 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.413 0.587 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 -17.130 0.036 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.019 4.019 4 C -0.143 4.143 5 C -0.074 4.074 6 C -0.208 4.208 7 C -0.208 4.208 8 C 0.006 3.994 9 N -0.357 5.357 10 C 0.295 3.705 11 O -0.404 6.404 12 C 0.264 3.736 13 O -0.402 6.402 14 N -0.226 5.226 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.170 4.170 22 N -0.393 5.393 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.250 0.750 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.003 -15.799 0.035 23.210 hybrid contribution 0.380 -0.373 -0.071 0.538 sum -16.623 -16.172 -0.036 23.192 Atomic orbital electron populations 1.22737 0.80983 1.02768 0.99993 1.87863 1.19727 1.28279 1.95445 1.22698 0.94012 0.84545 1.00602 1.21446 0.93181 0.95770 1.03928 1.20741 0.93960 0.95717 0.96959 1.22015 1.01527 1.00605 0.96655 1.22016 1.01524 1.00599 0.96672 1.21445 0.91213 0.83740 1.03008 1.45750 1.06292 1.09991 1.73698 1.20280 0.83081 0.89906 0.77193 1.90736 1.61071 1.40259 1.48367 1.19655 0.83321 0.88886 0.81714 1.90651 1.60689 1.39078 1.49778 1.42147 1.05409 1.07817 1.67179 1.17266 0.91531 0.83764 1.25049 1.24134 1.00152 0.88523 1.07361 1.78253 0.85951 1.19250 1.25755 1.44560 1.05501 1.01925 1.38529 1.19939 0.82703 0.90146 1.52740 0.86414 1.25664 0.99092 0.96940 0.95353 1.70208 1.25347 1.09099 1.34695 0.85791 0.80221 0.79029 0.79013 1.19578 1.20053 1.18705 1.21313 0.95144 0.87052 1.19262 0.94069 0.89637 0.94078 0.92862 0.92869 0.90558 0.90565 0.91889 0.92000 0.91957 0.91958 0.92004 0.91889 0.90777 0.90774 0.74955 0.75573 0.80570 0.91364 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.31 10.70 -35.23 -0.38 -3.68 16 3 C 0.06 0.38 5.23 37.16 0.19 0.58 16 4 C -0.11 -0.70 4.64 -26.73 -0.12 -0.82 16 5 C -0.07 -0.50 0.56 -154.51 -0.09 -0.59 16 6 C -0.15 -1.01 7.95 37.16 0.30 -0.71 16 7 C -0.15 -1.01 7.95 37.15 0.30 -0.72 16 8 C 0.13 1.18 4.56 -4.04 -0.02 1.16 16 9 N -0.70 -8.06 4.95 -60.78 -0.30 -8.36 16 10 C 0.51 7.70 7.88 -11.65 -0.09 7.61 16 11 O -0.53 -8.70 16.48 5.48 0.09 -8.61 16 12 C 0.48 8.69 7.85 -11.65 -0.09 8.60 16 13 O -0.52 -10.47 13.62 5.45 0.07 -10.39 16 14 N -0.58 -11.00 5.45 -10.46 -0.06 -11.05 16 15 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 16 C -0.03 -0.67 10.84 -17.02 -0.18 -0.85 16 17 N -0.26 -7.48 10.41 30.81 0.32 -7.16 16 18 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 19 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.09 11.83 55.50 0.66 -20.43 16 23 Si 0.94 18.65 29.56 -169.99 -5.02 13.62 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 27 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.32 6.43 -51.93 -0.33 -0.02 16 32 H 0.05 0.32 6.43 -51.93 -0.33 -0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 36 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 40 H 0.06 0.47 6.86 -51.92 -0.36 0.11 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.41 4.44 5.63 -40.82 -0.23 4.21 16 44 H 0.41 6.67 8.29 -40.82 -0.34 6.33 16 45 H 0.18 4.41 5.92 -52.49 -0.31 4.10 16 46 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.15 2.93 8.06 -52.49 -0.42 2.50 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -32.99 387.42 -5.24 -38.22 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.70 Total: 11.93 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 0.29 Total: 3.87 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.58 Total: -50.80 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.21 Total: -22.68 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.99 -5.24 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320155213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.091 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds