Wall clock time and date at job start Tue Mar 31 2020 21:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99828 * 2 1 4 4 C 1.53005 * 109.46910 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47259 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46729 * 59.99650 * 5 4 3 7 7 C 1.52993 * 109.46792 * 300.00204 * 5 4 3 8 8 C 1.52992 * 109.47073 * 180.02562 * 5 4 3 9 9 N 1.46505 * 109.46986 * 179.97438 * 8 5 4 10 10 C 1.34778 * 120.00007 * 179.97438 * 9 8 5 11 11 O 1.21366 * 120.00035 * 0.02562 * 10 9 8 12 12 C 1.49309 * 119.99924 * 180.02562 * 10 9 8 13 13 O 1.21407 * 119.99668 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00138 * 180.02562 * 12 10 9 15 15 C 1.40296 * 120.00306 * 179.97438 * 14 12 10 16 16 C 1.40718 * 126.09771 * 359.96814 * 15 14 12 17 17 N 1.30874 * 108.37509 * 179.74082 * 16 15 14 18 18 N 1.40061 * 108.43445 * 0.44356 * 17 16 15 19 19 C 1.37294 * 126.05340 * 179.81771 * 18 17 16 20 20 H 1.07999 * 120.00339 * 173.75960 * 19 18 17 21 21 C 1.39009 * 120.00129 * 354.03394 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58773 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.58331 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.09925 * 179.97438 * 15 14 12 28 28 H 1.09002 * 109.46976 * 59.99974 * 1 2 3 29 29 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46965 * 299.99971 * 1 2 3 31 31 H 1.09004 * 109.47410 * 60.00149 * 3 2 1 32 32 H 1.08997 * 109.47535 * 300.00025 * 3 2 1 33 33 H 1.08993 * 109.47392 * 60.00070 * 4 3 2 34 34 H 1.09002 * 109.47159 * 299.99585 * 4 3 2 35 35 H 1.09007 * 109.46448 * 180.02562 * 6 5 4 36 36 H 1.08993 * 109.47111 * 300.00044 * 6 5 4 37 37 H 1.08994 * 109.47074 * 60.00649 * 6 5 4 38 38 H 1.09001 * 109.47261 * 299.99467 * 7 5 4 39 39 H 1.09002 * 109.47843 * 59.99734 * 7 5 4 40 40 H 1.09007 * 109.47259 * 179.97438 * 7 5 4 41 41 H 1.08993 * 109.47490 * 60.00059 * 8 5 4 42 42 H 1.09002 * 109.47247 * 299.99459 * 8 5 4 43 43 H 0.96997 * 120.00020 * 0.02562 * 9 8 5 44 44 H 0.97005 * 120.00018 * 359.97438 * 14 12 10 45 45 H 1.07996 * 125.81429 * 0.02869 * 16 15 14 46 46 H 0.96998 * 120.00239 * 179.97438 * 22 21 19 47 47 H 1.07992 * 126.25470 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5824 0.0000 6 6 3.7067 3.3409 1.2499 7 6 3.7059 3.3424 -1.2485 8 6 5.6830 2.4615 -0.0013 9 7 6.2789 3.7999 -0.0013 10 6 7.6193 3.9408 -0.0018 11 8 8.3327 2.9589 -0.0028 12 6 8.2266 5.3048 -0.0012 13 8 7.5129 6.2869 -0.0008 14 7 9.5669 5.4457 -0.0023 15 6 10.1376 6.7273 -0.0023 16 6 9.4361 7.9472 -0.0019 17 7 10.3071 8.9240 0.0036 18 7 11.5936 8.3702 -0.0034 19 6 12.7746 9.0703 -0.0042 20 1 13.7136 8.5455 0.0918 21 6 12.7616 10.4553 -0.1229 22 7 11.6200 11.1033 -0.1237 23 14 14.3687 11.3943 -0.2810 24 1 14.6662 11.6281 -1.7169 25 1 14.2507 12.6987 0.4189 26 1 15.4668 10.6026 0.3295 27 6 11.4653 7.0119 -0.0028 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6439 -0.8908 34 1 3.8575 0.6436 0.8892 35 1 4.1498 4.3368 1.2501 36 1 2.6202 3.4269 1.2503 37 1 4.0287 2.7995 2.1394 38 1 4.0272 2.8021 -2.1390 39 1 2.6193 3.4285 -1.2482 40 1 4.1489 4.3384 -1.2479 41 1 6.0039 1.9214 -0.8919 42 1 6.0053 1.9200 0.8881 43 1 5.7088 4.5846 -0.0002 44 1 10.1371 4.6609 -0.0030 45 1 8.3619 8.0585 -0.0011 46 1 11.6109 12.0697 -0.2062 47 1 12.2723 6.2942 -0.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320155213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:03 Heat of formation + Delta-G solvation = -64.279757 kcal Electronic energy + Delta-G solvation = -28478.028360 eV Core-core repulsion = 24276.049857 eV Total energy + Delta-G solvation = -4201.978503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04848 -41.25373 -39.95351 -39.20061 -38.10486 -36.21549 -35.19008 -34.63020 -32.29760 -30.56047 -29.90888 -28.34540 -28.24857 -27.22291 -26.94915 -25.32240 -23.62868 -22.86905 -21.71667 -21.24610 -20.19087 -19.38634 -19.08134 -17.69581 -17.50463 -17.39555 -17.07668 -16.95287 -16.72800 -16.53752 -15.91137 -15.83130 -15.58606 -15.31874 -15.02246 -14.83601 -14.78338 -14.62824 -14.29344 -14.20653 -13.52185 -13.38267 -13.14982 -13.00768 -12.89271 -12.85681 -12.74404 -12.48890 -12.27198 -12.24061 -12.06494 -11.96729 -11.80256 -11.67326 -11.44099 -11.07719 -10.86902 -10.58479 -10.51969 -10.29544 -10.13944 -8.62417 -8.49384 -6.26835 0.29012 1.29507 1.30434 1.42624 1.59392 1.72583 2.04607 2.12054 2.53637 2.56352 2.82597 2.99172 3.06818 3.53048 3.58805 3.75190 3.92718 4.19557 4.30149 4.37705 4.39772 4.51233 4.52791 4.54572 4.59690 4.63387 4.67317 4.80211 4.87421 4.91619 4.95990 4.97873 4.98618 5.06152 5.10459 5.11786 5.21412 5.22944 5.30632 5.40905 5.43071 5.90240 6.00139 6.24798 6.27129 6.48222 6.67321 6.80147 7.07227 7.41355 7.62755 8.50125 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042860 B = 0.001672 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.127588 B =16738.939185 C =17180.600962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C -0.101 4.101 5 C -0.061 4.061 6 C -0.152 4.152 7 C -0.152 4.152 8 C 0.126 3.874 9 N -0.684 5.684 10 C 0.523 3.477 11 O -0.541 6.541 12 C 0.486 3.514 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.058 4.058 16 C -0.047 4.047 17 N -0.309 5.309 18 N -0.163 5.163 19 C -0.355 4.355 20 H 0.141 0.859 21 C -0.003 4.003 22 N -0.820 5.820 23 Si 1.019 2.981 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.074 4.074 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.417 0.583 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.085 -18.688 -0.007 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.019 4.019 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.209 4.209 7 C -0.209 4.209 8 C 0.004 3.996 9 N -0.338 5.338 10 C 0.303 3.697 11 O -0.419 6.419 12 C 0.268 3.732 13 O -0.422 6.422 14 N -0.227 5.227 15 C -0.165 4.165 16 C -0.222 4.222 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.167 1.167 27 C -0.225 4.225 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.256 0.744 44 H 0.261 0.739 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.938 -17.410 -0.004 24.290 hybrid contribution 0.158 -0.057 -0.050 0.175 sum -16.781 -17.466 -0.054 24.221 Atomic orbital electron populations 1.22898 0.79705 1.03653 1.00790 1.87821 1.21269 1.29225 1.95621 1.22748 0.93668 0.84211 1.01316 1.21386 0.93491 0.95253 1.03765 1.20630 0.92179 0.96109 0.97283 1.22033 1.02427 0.99992 0.96449 1.22034 1.02424 0.99984 0.96468 1.21665 0.92657 0.82114 1.03192 1.45759 1.05012 1.11436 1.71568 1.19634 0.84069 0.88016 0.77946 1.90742 1.61587 1.39902 1.49659 1.20296 0.82891 0.90105 0.79957 1.90643 1.61156 1.40353 1.50027 1.42088 1.06075 1.06716 1.67835 1.17314 0.91348 0.84740 1.23055 1.24243 1.00095 0.89559 1.08319 1.78148 0.87296 1.21147 1.27440 1.44834 1.05265 1.03168 1.39839 1.20666 0.83300 0.91152 1.53479 0.84132 1.26870 1.03003 0.97658 0.94034 1.70372 1.28306 1.09500 1.36616 0.84575 0.75436 0.77178 0.79017 1.19159 1.20029 1.16656 1.22007 0.96418 0.86620 1.17437 0.93259 0.88847 0.93265 0.92118 0.92130 0.90754 0.90756 0.92715 0.90653 0.91945 0.91954 0.90655 0.92718 0.90577 0.90566 0.74385 0.73913 0.80691 0.91221 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.41 10.70 -148.98 -1.59 -8.01 16 3 C 0.06 0.64 5.23 71.98 0.38 1.02 16 4 C -0.10 -1.17 4.64 30.60 0.14 -1.03 16 5 C -0.06 -0.73 0.56 -52.18 -0.03 -0.76 16 6 C -0.15 -1.76 7.95 71.98 0.57 -1.19 16 7 C -0.15 -1.76 7.95 71.98 0.57 -1.19 16 8 C 0.13 2.09 4.56 86.38 0.39 2.48 16 9 N -0.68 -14.73 4.95 -464.56 -2.30 -17.03 16 10 C 0.52 14.98 7.88 87.23 0.69 15.67 16 11 O -0.54 -16.92 16.48 -3.30 -0.05 -16.98 16 12 C 0.49 17.11 7.85 87.23 0.69 17.80 16 13 O -0.54 -21.68 13.62 -3.42 -0.05 -21.73 16 14 N -0.58 -21.43 5.45 -305.34 -1.66 -23.10 16 15 C -0.06 -2.68 6.90 37.82 0.26 -2.42 16 16 C -0.05 -2.47 10.84 85.44 0.93 -1.55 16 17 N -0.31 -18.26 10.41 -56.44 -0.59 -18.85 16 18 N -0.16 -8.96 3.73 -189.99 -0.71 -9.67 16 19 C -0.35 -18.59 10.24 84.02 0.86 -17.73 16 20 H 0.14 6.40 7.84 -2.91 -0.02 6.38 16 21 C 0.00 -0.17 5.50 84.96 0.47 0.29 16 22 N -0.82 -46.51 11.83 21.66 0.26 -46.26 16 23 Si 1.02 38.01 29.56 68.60 2.03 40.04 16 24 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 25 H -0.28 -10.12 7.11 99.48 0.71 -9.42 16 26 H -0.24 -8.22 7.11 99.48 0.71 -7.51 16 27 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 32 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.73 6.86 -2.38 -0.02 0.72 16 36 H 0.07 0.68 6.43 -2.39 -0.02 0.67 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.68 6.43 -2.39 -0.02 0.67 16 40 H 0.05 0.73 6.86 -2.38 -0.02 0.72 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.42 8.48 5.63 -92.71 -0.52 7.96 16 44 H 0.42 13.13 8.29 -92.70 -0.77 12.36 16 45 H 0.18 9.08 5.92 -2.91 -0.02 9.06 16 46 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 47 H 0.19 6.93 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -72.92 387.42 3.18 -69.74 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.27 Total: 41.44 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 8.12 Total: 10.41 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -5.00 Total: -114.91 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.70 Total: -46.72 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -72.92 3.18 -69.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320155213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.459 kcal (2) G-P(sol) polarization free energy of solvation -72.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds