Wall clock time and date at job start Tue Mar 31 2020 21:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46799 * 2 1 4 4 C 1.53000 * 109.47355 * 239.99861 * 2 1 3 5 5 C 1.52994 * 109.47457 * 119.99441 * 2 1 3 6 6 H 1.09003 * 109.47457 * 305.81487 * 5 2 1 7 7 C 1.53000 * 109.47424 * 185.80789 * 5 2 1 8 8 O 1.42897 * 109.47001 * 301.85043 * 7 5 2 9 9 N 1.46506 * 109.46650 * 65.80556 * 5 2 1 10 10 C 1.34783 * 119.99746 * 204.99735 * 9 5 2 11 11 O 1.21358 * 120.00232 * 0.02562 * 10 9 5 12 12 C 1.49344 * 119.99721 * 180.02562 * 10 9 5 13 13 O 1.21381 * 120.00060 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99715 * 180.02562 * 12 10 9 15 15 C 1.39938 * 119.99710 * 180.02562 * 14 12 10 16 16 C 1.40458 * 125.98090 * 0.02562 * 15 14 12 17 17 C 1.35212 * 107.86854 * 179.97438 * 16 15 14 18 18 N 1.34988 * 107.87523 * 0.02562 * 17 16 15 19 19 C 1.46503 * 125.97316 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47392 * 125.02629 * 19 18 17 21 21 H 1.08002 * 119.99500 * 0.02562 * 20 19 18 22 22 C 1.37876 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99512 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00007 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47330 * 89.99574 * 24 22 20 26 26 H 1.48497 * 109.47067 * 209.99758 * 24 22 20 27 27 H 1.48496 * 109.46897 * 329.99335 * 24 22 20 28 28 N 1.31267 * 125.97894 * 179.97438 * 15 14 12 29 29 H 1.08997 * 109.47331 * 300.00367 * 1 2 3 30 30 H 1.09004 * 109.47347 * 60.00315 * 1 2 3 31 31 H 1.09000 * 109.47203 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46660 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47156 * 299.99476 * 3 2 1 34 34 H 1.08997 * 109.47478 * 59.99724 * 3 2 1 35 35 H 1.08998 * 109.47131 * 289.55611 * 4 2 1 36 36 H 1.09005 * 109.47071 * 49.55060 * 4 2 1 37 37 H 1.08999 * 109.47137 * 169.54820 * 4 2 1 38 38 H 1.08996 * 109.47285 * 61.85229 * 7 5 2 39 39 H 1.09002 * 109.47169 * 181.85386 * 7 5 2 40 40 H 0.96699 * 114.00013 * 180.02562 * 8 7 5 41 41 H 0.97001 * 119.99998 * 25.00644 * 9 5 2 42 42 H 0.96992 * 120.00523 * 0.02562 * 14 12 10 43 43 H 1.08001 * 126.06753 * 359.97438 * 16 15 14 44 44 H 1.08001 * 126.06634 * 179.97438 * 17 16 15 45 45 H 1.09007 * 109.46907 * 245.02988 * 19 18 17 46 46 H 1.09003 * 109.47020 * 5.02223 * 19 18 17 47 47 H 0.97005 * 119.99476 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2492 6 1 1.5942 -0.2708 2.1362 7 6 3.5630 -0.5959 1.3243 8 8 4.1452 -1.1477 0.1417 9 7 1.6691 -2.1368 1.1815 10 6 1.5430 -2.8554 2.3148 11 8 1.7363 -2.3296 3.3913 12 6 1.1655 -4.2986 2.2457 13 8 0.9726 -4.8246 1.1689 14 7 1.0389 -5.0170 3.3789 15 6 0.6856 -6.3695 3.3141 16 6 0.4354 -7.1018 2.1420 17 6 0.1270 -8.3682 2.5018 18 7 0.1780 -8.4402 3.8488 19 6 -0.0885 -9.6324 4.6575 20 6 1.0908 -9.9044 5.5555 21 1 1.9525 -9.2539 5.5269 22 6 1.0697 -10.9835 6.4134 23 7 0.0200 -11.7751 6.4485 24 14 2.5312 -11.3201 7.5269 25 1 2.3457 -10.6074 8.8164 26 1 2.6358 -12.7798 7.7787 27 1 3.7741 -10.8408 6.8707 28 7 0.5311 -7.1761 4.3382 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.8368 -1.7885 -1.1610 36 1 1.5325 -0.3264 -2.1294 37 1 3.1139 -0.5626 -1.3473 38 1 3.8375 0.4556 1.4078 39 1 3.9296 -1.1374 2.1964 40 1 5.1109 -1.1026 0.1208 41 1 1.5143 -2.5570 0.3210 42 1 1.1927 -4.5967 4.2394 43 1 0.4811 -6.7210 1.1324 44 1 -0.1176 -9.1782 1.8307 45 1 -0.9780 -9.4674 5.2658 46 1 -0.2506 -10.4877 4.0015 47 1 0.0050 -12.5341 7.0524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320601098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:42 Heat of formation + Delta-G solvation = -35.176520 kcal Electronic energy + Delta-G solvation = -29284.390900 eV Core-core repulsion = 25083.674409 eV Total energy + Delta-G solvation = -4200.716492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19704 -40.45708 -39.29572 -38.07177 -36.16908 -35.13581 -33.81142 -33.32055 -31.03945 -29.53415 -29.40902 -27.70321 -27.55575 -26.90473 -25.22812 -23.41761 -22.66253 -21.23474 -20.39768 -19.86448 -19.28665 -18.16565 -17.84991 -16.97682 -16.62355 -16.43722 -16.33827 -16.00307 -15.29190 -15.06737 -14.99809 -14.49049 -14.20187 -14.13389 -14.06334 -13.66145 -13.53913 -13.05015 -12.93864 -12.86876 -12.51719 -12.40846 -12.29735 -12.18269 -11.95268 -11.87886 -11.53271 -11.20333 -11.05606 -11.02975 -10.94097 -10.88092 -10.53235 -10.27518 -10.18150 -10.02119 -9.56123 -9.53425 -9.45782 -8.64863 -8.22458 -7.57511 -6.25984 -4.31068 1.21501 2.06331 2.66696 3.03997 3.19402 3.23842 3.29604 3.35212 3.66975 3.83333 3.87803 4.13463 4.30312 4.38448 4.41610 4.54582 4.84685 4.89411 4.99996 5.09374 5.19907 5.24405 5.30718 5.37791 5.43409 5.44185 5.60682 5.62291 5.71911 5.75171 5.82441 5.96440 6.00547 6.11174 6.26063 6.33508 6.42092 6.79679 6.93907 7.02422 7.22947 7.25256 7.38237 7.63805 7.69504 7.85105 7.96753 7.98131 8.54525 8.77581 9.34743 10.82819 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023980 B = 0.002060 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.370590 B =13589.695789 C =14090.959387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.145 4.145 5 C 0.155 3.845 6 H 0.104 0.896 7 C 0.059 3.941 8 O -0.557 6.557 9 N -0.685 5.685 10 C 0.516 3.484 11 O -0.521 6.521 12 C 0.512 3.488 13 O -0.499 6.499 14 N -0.599 5.599 15 C 0.251 3.749 16 C -0.286 4.286 17 C 0.053 3.947 18 N -0.315 5.315 19 C 0.257 3.743 20 C -0.529 4.529 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.909 3.091 25 H -0.277 1.277 26 H -0.284 1.284 27 H -0.272 1.272 28 N -0.295 5.295 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.373 0.627 41 H 0.416 0.584 42 H 0.423 0.577 43 H 0.161 0.839 44 H 0.170 0.830 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.241 25.059 -15.230 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.198 4.198 4 C -0.202 4.202 5 C 0.051 3.949 6 H 0.122 0.878 7 C -0.020 4.020 8 O -0.363 6.363 9 N -0.341 5.341 10 C 0.296 3.704 11 O -0.396 6.396 12 C 0.292 3.708 13 O -0.372 6.372 14 N -0.247 5.247 15 C -0.002 4.002 16 C -0.317 4.317 17 C -0.097 4.097 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.568 4.568 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.210 1.210 27 H -0.197 1.197 28 N -0.126 5.126 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.255 0.745 42 H 0.260 0.740 43 H 0.178 0.822 44 H 0.188 0.812 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.539 24.570 -13.949 28.474 hybrid contribution 1.230 -0.211 0.122 1.254 sum 4.769 24.359 -13.826 28.413 Atomic orbital electron populations 1.21943 0.94045 1.02371 1.02041 1.20755 0.95886 0.95824 0.94715 1.21916 1.01381 0.94388 1.02149 1.22078 1.03442 0.99428 0.95245 1.21262 0.93139 0.80650 0.99867 0.87782 1.22662 0.93429 0.97842 0.88021 1.86631 1.24789 1.84680 1.40185 1.45820 1.68100 1.10768 1.09369 1.19931 0.78472 0.87084 0.84896 1.90777 1.49033 1.71603 1.28216 1.19924 0.79403 0.87245 0.84252 1.90709 1.47398 1.70976 1.28070 1.41996 1.65326 1.07147 1.10233 1.19016 1.03183 0.84355 0.93655 1.21516 1.18000 0.92886 0.99274 1.22580 1.02159 0.98656 0.86271 1.49167 1.48009 1.07947 1.04549 1.19798 0.98456 0.77037 0.90727 1.21247 1.02188 1.11881 1.21469 0.91261 1.24947 0.96793 0.95431 0.96913 1.69921 1.28923 1.16348 1.38101 0.86310 0.82144 0.77303 0.80654 1.20294 1.20977 1.19714 1.77402 1.24646 0.90656 1.19906 0.92528 0.92149 0.92291 0.91965 0.92047 0.92519 0.92972 0.93240 0.89249 0.92137 0.92931 0.77922 0.74462 0.73998 0.82163 0.81234 0.93561 0.92368 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.35 37.16 0.31 -0.66 16 2 C -0.07 -0.46 0.62 -154.51 -0.10 -0.55 16 3 C -0.14 -0.70 7.94 37.16 0.30 -0.41 16 4 C -0.14 -0.99 7.46 37.16 0.28 -0.71 16 5 C 0.16 1.23 1.78 -67.93 -0.12 1.11 16 6 H 0.10 0.88 7.58 -51.93 -0.39 0.49 16 7 C 0.06 0.41 6.25 37.16 0.23 0.64 16 8 O -0.56 -3.59 9.86 -35.23 -0.35 -3.94 16 9 N -0.69 -6.82 4.37 -54.27 -0.24 -7.05 16 10 C 0.52 6.56 7.85 -11.63 -0.09 6.47 16 11 O -0.52 -7.39 16.14 5.49 0.09 -7.30 16 12 C 0.51 7.69 7.85 -11.64 -0.09 7.60 16 13 O -0.50 -8.10 13.60 5.47 0.07 -8.02 16 14 N -0.60 -9.96 5.43 -11.58 -0.06 -10.02 16 15 C 0.25 5.06 8.10 -154.55 -1.25 3.81 16 16 C -0.29 -5.51 9.60 -39.82 -0.38 -5.89 16 17 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 18 N -0.31 -7.25 3.67 -62.56 -0.23 -7.48 16 19 C 0.26 6.48 6.26 -5.19 -0.03 6.44 16 20 C -0.53 -14.69 9.23 -34.44 -0.32 -15.01 16 21 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 24 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 N -0.29 -6.82 12.42 31.41 0.39 -6.43 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 7.78 -51.93 -0.40 0.04 16 32 H 0.06 0.29 6.38 -51.93 -0.33 -0.04 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.41 5.90 -51.93 -0.31 0.10 16 36 H 0.05 0.31 8.11 -51.93 -0.42 -0.11 16 37 H 0.09 0.63 5.59 -51.93 -0.29 0.34 16 38 H 0.06 0.30 6.45 -51.93 -0.33 -0.03 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.37 1.11 9.12 45.56 0.42 1.52 16 41 H 0.42 4.06 5.87 -40.82 -0.24 3.82 16 42 H 0.42 6.45 8.29 -40.82 -0.34 6.11 16 43 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 44 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 45 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 385.89 15.07 5.82 5.82 Total: -1.00 -32.38 385.89 -6.23 -38.61 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.88 Total: 8.61 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.56 Total: 5.29 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.60 Total: -55.46 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.18 Total: -19.26 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.38 -6.23 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320601098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.435 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds