Wall clock time and date at job start Tue Mar 31 2020 21:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.07996 * 120.00449 * 245.60469 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48499 * 109.47440 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21360 * 120.00402 * 0.02562 * 14 13 3 16 16 C 1.49307 * 119.99962 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00374 * 179.97438 * 16 14 13 19 19 C 1.39201 * 120.00124 * 180.02562 * 18 16 14 20 20 C 1.36209 * 126.27464 * 359.69333 * 19 18 16 21 21 C 1.39691 * 107.85948 * 179.84640 * 20 19 18 22 22 C 1.50697 * 125.76882 * 180.16320 * 21 20 19 23 23 C 1.53011 * 109.46992 * 125.27744 * 22 21 20 24 24 O 1.42899 * 109.46886 * 179.97438 * 23 22 21 25 25 C 1.42897 * 113.99733 * 179.97438 * 24 23 22 26 26 N 1.30847 * 108.45795 * 0.41726 * 21 20 19 27 27 N 1.35857 * 126.26704 * 180.02562 * 19 18 16 28 28 C 1.46498 * 126.10061 * 359.97438 * 27 19 18 29 29 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 30 30 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 34 34 H 0.96993 * 119.99752 * 354.83016 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 36 36 H 0.97010 * 119.99795 * 0.02562 * 18 16 14 37 37 H 1.07997 * 126.06907 * 359.97438 * 20 19 18 38 38 H 1.09000 * 109.47121 * 245.27435 * 22 21 20 39 39 H 1.08993 * 109.47773 * 5.27664 * 22 21 20 40 40 H 1.09000 * 109.46936 * 299.99805 * 23 22 21 41 41 H 1.09003 * 109.47117 * 59.99933 * 23 22 21 42 42 H 1.08997 * 109.47482 * 59.99788 * 25 24 23 43 43 H 1.08999 * 109.47395 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.47278 * 300.00339 * 25 24 23 45 45 H 1.08996 * 109.46948 * 90.00151 * 28 27 19 46 46 H 1.09000 * 109.46731 * 210.00209 * 28 27 19 47 47 H 1.08997 * 109.47336 * 330.00097 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9511 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3362 2.6304 0.4593 16 6 0.0640 3.3228 2.6671 17 8 0.8478 3.3519 3.5937 18 7 -1.1520 3.8897 2.7951 19 6 -1.5093 4.5082 3.9898 20 6 -0.7371 4.6095 5.1073 21 6 -1.4695 5.3046 6.0726 22 6 -0.9952 5.6455 7.4618 23 6 -1.1229 7.1532 7.6887 24 8 -0.6737 7.4763 9.0062 25 6 -0.7511 8.8679 9.3217 26 7 -2.6390 5.6050 5.5684 27 7 -2.6946 5.1159 4.2570 28 6 -3.8284 5.2387 3.3374 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5317 35 1 2.2901 2.1166 1.9978 36 1 -1.7782 3.8668 2.0545 37 1 0.2644 4.2230 5.2253 38 1 -1.6040 5.1150 8.1939 39 1 0.0476 5.3484 7.5728 40 1 -0.5141 7.6837 6.9566 41 1 -2.1658 7.4503 7.5777 42 1 -1.7860 9.2011 9.2440 43 1 -0.3920 9.0306 10.3379 44 1 -0.1340 9.4336 8.6236 45 1 -4.4876 4.3790 3.4566 46 1 -4.3792 6.1526 3.5597 47 1 -3.4617 5.2759 2.3116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320887773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:23 Heat of formation + Delta-G solvation = -33.904713 kcal Electronic energy + Delta-G solvation = -29099.881147 eV Core-core repulsion = 24899.219804 eV Total energy + Delta-G solvation = -4200.661342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81158 -40.36470 -38.55419 -38.15221 -35.91937 -35.23829 -34.03509 -32.55656 -31.61243 -31.44873 -29.40530 -27.59816 -27.35539 -26.09725 -24.96729 -23.44109 -22.51114 -21.68725 -20.43707 -20.12275 -19.75057 -18.54399 -17.71071 -17.06403 -16.69154 -16.55977 -16.27088 -16.22180 -15.64174 -15.52140 -15.14000 -14.94580 -14.41295 -14.05669 -13.90941 -13.57472 -13.45511 -13.28778 -12.99590 -12.82534 -12.65592 -12.60908 -12.44936 -12.19111 -11.91000 -11.81052 -11.52596 -11.44263 -11.11574 -11.06133 -10.85103 -10.66469 -10.56147 -10.02033 -9.93534 -9.71986 -9.40523 -9.18695 -9.06442 -8.47156 -8.42253 -8.32053 -6.68271 -4.33284 1.13784 1.74354 1.90448 2.58486 2.62862 3.29146 3.35888 3.40726 3.47058 3.50863 3.74202 4.17473 4.32359 4.70940 4.72933 4.78021 4.82074 4.85916 5.03408 5.06052 5.06827 5.10565 5.21820 5.25236 5.31884 5.35499 5.61504 5.65589 5.78800 5.90184 5.90953 5.93850 6.08322 6.46699 6.52025 6.61661 6.67010 6.68960 6.81585 6.84531 6.85104 7.05244 7.19339 7.39263 7.51350 7.59162 8.06631 8.17507 8.35484 8.68845 9.36453 10.73112 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002266 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.058230 B =12355.663825 C =13372.710723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.246 3.754 4 H 0.048 0.952 5 C -0.621 4.621 6 H 0.065 0.935 7 C 0.041 3.959 8 N -0.893 5.893 9 Si 1.040 2.960 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.656 5.656 14 C 0.501 3.499 15 O -0.530 6.530 16 C 0.514 3.486 17 O -0.484 6.484 18 N -0.628 5.628 19 C 0.309 3.691 20 C -0.269 4.269 21 C 0.089 3.911 22 C -0.034 4.034 23 C 0.068 3.932 24 O -0.393 6.393 25 C 0.033 3.967 26 N -0.286 5.286 27 N -0.390 5.390 28 C 0.098 3.902 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.408 0.592 36 H 0.422 0.578 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.014 10.856 13.227 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.143 3.857 4 H 0.065 0.935 5 C -0.659 4.659 6 H 0.084 0.916 7 C -0.167 4.167 8 N -0.525 5.525 9 Si 0.867 3.133 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.305 5.305 14 C 0.279 3.721 15 O -0.409 6.409 16 C 0.296 3.704 17 O -0.355 6.355 18 N -0.277 5.277 19 C 0.090 3.910 20 C -0.301 4.301 21 C -0.078 4.078 22 C -0.074 4.074 23 C -0.009 4.009 24 O -0.312 6.312 25 C -0.064 4.064 26 N -0.109 5.109 27 N -0.178 5.178 28 C -0.043 4.043 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.260 0.740 37 H 0.193 0.807 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.113 0.887 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.986 10.682 11.800 24.018 hybrid contribution 0.426 0.458 1.127 1.289 sum -17.560 11.140 12.928 24.486 Atomic orbital electron populations 1.21905 0.97372 0.99347 1.01668 1.22402 0.93802 0.99320 1.02519 1.19312 0.96500 0.88799 0.81087 0.93480 1.22064 0.89169 1.50156 1.04527 0.91647 1.25695 0.97578 0.92279 1.01120 1.70863 1.06998 1.40243 1.34413 0.84127 0.75553 0.77703 0.75925 1.20746 1.19438 1.20533 1.46220 1.13139 1.52164 1.18941 1.19408 0.84581 0.81447 0.86654 1.90745 1.50626 1.59570 1.39954 1.20859 0.80785 0.78896 0.89834 1.90706 1.49469 1.55113 1.40162 1.42535 1.17621 1.54122 1.13471 1.18087 0.88163 0.96429 0.88349 1.21575 1.04072 1.12983 0.91422 1.21853 0.91678 0.97738 0.96490 1.19826 1.03041 0.94889 0.89598 1.22457 0.98979 0.95542 0.83943 1.87834 1.86534 1.24728 1.32122 1.22727 1.00308 0.82037 1.01291 1.77342 1.20359 1.23308 0.89924 1.48597 1.11324 1.46212 1.11684 1.21863 0.86955 1.04407 0.91056 0.92795 0.94613 0.93708 0.90695 0.92593 0.91871 0.75687 0.73997 0.80677 0.89201 0.88681 0.93054 0.92617 0.94104 0.89582 0.94036 0.90517 0.88728 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.53 37.15 0.32 -2.35 16 2 C -0.14 -2.95 5.28 -26.73 -0.14 -3.09 16 3 C 0.25 5.48 1.82 -69.08 -0.13 5.35 16 4 H 0.05 1.11 6.26 -51.93 -0.32 0.79 16 5 C -0.62 -16.07 9.01 -34.44 -0.31 -16.38 16 6 H 0.07 1.79 7.96 -52.49 -0.42 1.38 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.00 16 8 N -0.89 -25.76 13.70 55.43 0.76 -25.00 16 9 Si 1.04 23.70 26.27 -169.99 -4.47 19.24 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -5.62 5.67 56.52 0.32 -5.30 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.66 -12.70 5.02 -55.41 -0.28 -12.98 16 14 C 0.50 8.77 6.48 -11.65 -0.08 8.69 16 15 O -0.53 -9.79 13.61 5.49 0.07 -9.72 16 16 C 0.51 7.90 7.85 -11.65 -0.09 7.81 16 17 O -0.48 -8.09 13.60 5.46 0.07 -8.02 16 18 N -0.63 -7.97 5.40 -11.80 -0.06 -8.03 16 19 C 0.31 4.07 7.68 -152.85 -1.17 2.89 16 20 C -0.27 -3.75 9.56 -39.77 -0.38 -4.13 16 21 C 0.09 1.11 6.48 -82.47 -0.53 0.57 16 22 C -0.03 -0.35 6.16 -27.88 -0.17 -0.52 16 23 C 0.07 0.66 5.90 37.16 0.22 0.88 16 24 O -0.39 -4.02 10.70 -35.23 -0.38 -4.39 16 25 C 0.03 0.23 11.01 101.05 1.11 1.35 16 26 N -0.29 -3.64 12.53 33.64 0.42 -3.21 16 27 N -0.39 -4.50 4.04 -67.08 -0.27 -4.77 16 28 C 0.10 0.69 11.30 59.85 0.68 1.37 16 29 H 0.05 1.00 7.88 -51.93 -0.41 0.59 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.80 5.63 -51.93 -0.29 0.51 16 32 H 0.07 1.63 4.74 -51.92 -0.25 1.38 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 35 H 0.41 7.59 7.99 -40.82 -0.33 7.27 16 36 H 0.42 4.44 7.46 -40.82 -0.30 4.13 16 37 H 0.18 2.60 5.83 -52.49 -0.31 2.30 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.90 8.12 -51.93 -0.42 0.48 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.45 7.52 -51.93 -0.39 0.06 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -31.13 386.63 -5.97 -37.11 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.90 Total: 10.50 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.77 Total: 3.46 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.57 Total: -54.00 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.23 Total: -22.13 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.47 Total: 19.24 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.13 -5.97 -37.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320887773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.202 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds