Wall clock time and date at job start Tue Mar 31 2020 21:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46914 * 2 1 4 4 H 1.08993 * 109.47295 * 305.55300 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55318 * 3 2 1 6 6 H 1.07996 * 120.00449 * 245.60469 * 5 3 2 7 7 C 1.37879 * 120.00154 * 65.60852 * 5 3 2 8 8 N 1.31514 * 120.00263 * 196.28627 * 7 5 3 9 9 Si 1.86803 * 120.00061 * 16.28010 * 7 5 3 10 10 H 1.48499 * 109.47440 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47391 * 300.00728 * 9 7 5 12 12 H 1.48507 * 109.46974 * 60.00396 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55540 * 3 2 1 14 14 C 1.34771 * 119.99789 * 274.99899 * 13 3 2 15 15 O 1.21360 * 120.00402 * 0.02562 * 14 13 3 16 16 C 1.49307 * 119.99962 * 179.97438 * 14 13 3 17 17 O 1.21397 * 119.99881 * 0.02562 * 16 14 13 18 18 N 1.34774 * 120.00374 * 179.97438 * 16 14 13 19 19 C 1.39201 * 120.00124 * 180.02562 * 18 16 14 20 20 C 1.36209 * 126.27464 * 359.69333 * 19 18 16 21 21 C 1.39691 * 107.85948 * 179.84640 * 20 19 18 22 22 C 1.50697 * 125.76882 * 180.16320 * 21 20 19 23 23 C 1.53011 * 109.46992 * 125.27744 * 22 21 20 24 24 O 1.42899 * 109.46886 * 179.97438 * 23 22 21 25 25 C 1.42897 * 113.99733 * 179.97438 * 24 23 22 26 26 N 1.30847 * 108.45795 * 0.41726 * 21 20 19 27 27 N 1.35857 * 126.26704 * 180.02562 * 19 18 16 28 28 C 1.46498 * 126.10061 * 359.97438 * 27 19 18 29 29 H 1.08998 * 109.47621 * 60.00436 * 1 2 3 30 30 H 1.09005 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47210 * 299.99485 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00580 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00343 * 2 1 3 34 34 H 0.96993 * 119.99752 * 354.83016 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99593 * 13 3 2 36 36 H 0.97010 * 119.99795 * 0.02562 * 18 16 14 37 37 H 1.07997 * 126.06907 * 359.97438 * 20 19 18 38 38 H 1.09000 * 109.47121 * 245.27435 * 22 21 20 39 39 H 1.08993 * 109.47773 * 5.27664 * 22 21 20 40 40 H 1.09000 * 109.46936 * 299.99805 * 23 22 21 41 41 H 1.09003 * 109.47117 * 59.99933 * 23 22 21 42 42 H 1.08997 * 109.47482 * 59.99788 * 25 24 23 43 43 H 1.08999 * 109.47395 * 180.02562 * 25 24 23 44 44 H 1.09007 * 109.47278 * 300.00339 * 25 24 23 45 45 H 1.08996 * 109.46948 * 90.00151 * 28 27 19 46 46 H 1.09000 * 109.46731 * 210.00209 * 28 27 19 47 47 H 1.08997 * 109.47336 * 330.00097 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4448 -0.1375 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4072 0.6862 -1.3142 9 14 3.1039 0.7978 -2.8499 10 1 3.9632 0.2936 -3.9511 11 1 2.0023 -0.1664 -2.6011 12 1 2.5326 2.1146 -3.2306 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3854 15 8 -0.3362 2.6304 0.4593 16 6 0.0640 3.3228 2.6671 17 8 0.8478 3.3519 3.5937 18 7 -1.1520 3.8897 2.7951 19 6 -1.5093 4.5082 3.9898 20 6 -0.7371 4.6095 5.1073 21 6 -1.4695 5.3046 6.0726 22 6 -0.9952 5.6455 7.4618 23 6 -1.1229 7.1532 7.6887 24 8 -0.6737 7.4763 9.0062 25 6 -0.7511 8.8679 9.3217 26 7 -2.6390 5.6050 5.5684 27 7 -2.6946 5.1159 4.2570 28 6 -3.8284 5.2387 3.3374 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5317 35 1 2.2901 2.1166 1.9978 36 1 -1.7782 3.8668 2.0545 37 1 0.2644 4.2230 5.2253 38 1 -1.6040 5.1150 8.1939 39 1 0.0476 5.3484 7.5728 40 1 -0.5141 7.6837 6.9566 41 1 -2.1658 7.4503 7.5777 42 1 -1.7860 9.2011 9.2440 43 1 -0.3920 9.0306 10.3379 44 1 -0.1340 9.4336 8.6236 45 1 -4.4876 4.3790 3.4566 46 1 -4.3792 6.1526 3.5597 47 1 -3.4617 5.2759 2.3116 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320887773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:22 Heat of formation + Delta-G solvation = -56.712095 kcal Electronic energy + Delta-G solvation = -29100.870149 eV Core-core repulsion = 24899.219804 eV Total energy + Delta-G solvation = -4201.650345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.84819 -41.64091 -39.91514 -38.88840 -37.41815 -36.47052 -34.96035 -34.46158 -33.20407 -32.20766 -30.45534 -29.33259 -28.01475 -26.84682 -26.28404 -24.29958 -24.20099 -22.93279 -21.61244 -21.44657 -21.19155 -20.00125 -19.08205 -18.32984 -17.93543 -17.53848 -17.26474 -17.15313 -16.85997 -16.61021 -16.18401 -15.91017 -15.65661 -15.39466 -15.15389 -14.82277 -14.55101 -14.50503 -14.31687 -14.09690 -14.02742 -13.70850 -13.59478 -13.37254 -12.94410 -12.84470 -12.67162 -12.55583 -12.48220 -12.27532 -12.20559 -12.06007 -11.79074 -11.63925 -11.39787 -11.12487 -10.78883 -10.64131 -10.49193 -10.05914 -9.94014 -9.37302 -8.81714 -6.47004 -0.07947 0.66274 0.83278 1.48128 1.53724 1.57875 1.62028 1.72443 2.08326 2.43705 2.46797 2.80527 3.00929 3.28551 3.38562 3.92163 4.06115 4.13226 4.30017 4.32644 4.34967 4.36135 4.38262 4.47050 4.48820 4.53217 4.55579 4.57700 4.67209 4.76212 4.79452 4.86505 4.96154 5.01753 5.09066 5.13419 5.22851 5.37648 5.50855 5.55180 5.60913 5.70823 5.83634 5.98443 6.17949 6.32661 6.47553 6.56489 6.58475 6.91259 7.30644 8.58577 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.002266 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.058230 B =12355.663825 C =13372.710723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.251 3.749 4 H 0.041 0.959 5 C -0.619 4.619 6 H 0.036 0.964 7 C -0.006 4.006 8 N -0.926 5.926 9 Si 1.072 2.928 10 H -0.286 1.286 11 H -0.236 1.236 12 H -0.267 1.267 13 N -0.666 5.666 14 C 0.508 3.492 15 O -0.534 6.534 16 C 0.523 3.477 17 O -0.500 6.500 18 N -0.609 5.609 19 C 0.300 3.700 20 C -0.289 4.289 21 C 0.087 3.913 22 C -0.033 4.033 23 C 0.074 3.926 24 O -0.412 6.412 25 C 0.026 3.974 26 N -0.294 5.294 27 N -0.383 5.383 28 C 0.085 3.915 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.257 0.743 35 H 0.409 0.591 36 H 0.434 0.566 37 H 0.162 0.838 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.046 0.954 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.021 11.324 13.142 26.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.147 3.853 4 H 0.059 0.941 5 C -0.657 4.657 6 H 0.055 0.945 7 C -0.207 4.207 8 N -0.561 5.561 9 Si 0.893 3.107 10 H -0.212 1.212 11 H -0.160 1.160 12 H -0.193 1.193 13 N -0.315 5.315 14 C 0.287 3.713 15 O -0.413 6.413 16 C 0.304 3.696 17 O -0.372 6.372 18 N -0.259 5.259 19 C 0.080 3.920 20 C -0.321 4.321 21 C -0.079 4.079 22 C -0.072 4.072 23 C -0.003 4.003 24 O -0.332 6.332 25 C -0.070 4.070 26 N -0.118 5.118 27 N -0.171 5.171 28 C -0.054 4.054 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.245 0.755 36 H 0.274 0.726 37 H 0.179 0.821 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.119 0.881 44 H 0.065 0.935 45 H 0.111 0.889 46 H 0.126 0.874 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.062 11.179 11.739 26.578 hybrid contribution 1.315 0.413 1.256 1.865 sum -19.746 11.592 12.994 26.328 Atomic orbital electron populations 1.21812 0.94999 1.00977 1.01660 1.22301 0.95854 0.97674 1.02044 1.19038 0.93905 0.90163 0.82186 0.94128 1.22251 0.91321 1.48697 1.03389 0.94527 1.26964 0.97715 0.91844 1.04157 1.70979 1.08151 1.42960 1.33980 0.83750 0.75300 0.79064 0.72599 1.21236 1.16037 1.19266 1.46031 1.14228 1.53072 1.18138 1.19569 0.83678 0.80710 0.87324 1.90737 1.50592 1.59492 1.40457 1.20269 0.81528 0.79167 0.88644 1.90727 1.50238 1.55914 1.40307 1.42228 1.16780 1.53087 1.13838 1.18035 0.88995 0.96943 0.88069 1.21595 1.04023 1.13911 0.92530 1.22058 0.91387 0.97357 0.97088 1.19858 1.03242 0.95432 0.88668 1.22356 0.98914 0.95076 0.83927 1.87801 1.86694 1.26565 1.32121 1.22932 1.01184 0.80632 1.02287 1.77308 1.20393 1.23486 0.90611 1.48928 1.11589 1.44944 1.11666 1.22299 0.86074 1.05898 0.91144 0.92912 0.92221 0.93535 0.91509 0.92812 0.93365 0.75513 0.72576 0.82065 0.88497 0.88479 0.93335 0.92521 0.93168 0.88139 0.93512 0.88891 0.87363 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.53 71.98 0.61 -3.99 16 2 C -0.14 -5.59 5.28 30.59 0.16 -5.43 16 3 C 0.25 11.00 1.82 44.25 0.08 11.08 16 4 H 0.04 1.86 6.26 -2.39 -0.01 1.85 16 5 C -0.62 -32.52 9.01 25.60 0.23 -32.29 16 6 H 0.04 2.09 7.96 -2.91 -0.02 2.06 16 7 C -0.01 -0.33 5.32 84.66 0.45 0.12 16 8 N -0.93 -54.89 13.70 21.45 0.29 -54.59 16 9 Si 1.07 46.96 26.27 68.60 1.80 48.76 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.24 -9.10 5.67 99.48 0.56 -8.53 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 N -0.67 -25.44 5.02 -447.59 -2.25 -27.68 16 14 C 0.51 17.06 6.48 87.23 0.57 17.62 16 15 O -0.53 -18.50 13.61 -3.28 -0.04 -18.54 16 16 C 0.52 15.43 7.85 87.23 0.68 16.11 16 17 O -0.50 -16.56 13.60 -3.39 -0.05 -16.61 16 18 N -0.61 -14.29 5.40 -309.58 -1.67 -15.96 16 19 C 0.30 7.42 7.68 131.25 1.01 8.43 16 20 C -0.29 -7.89 9.56 22.15 0.21 -7.68 16 21 C 0.09 2.10 6.48 43.06 0.28 2.37 16 22 C -0.03 -0.65 6.16 29.85 0.18 -0.46 16 23 C 0.07 1.39 5.90 71.99 0.42 1.81 16 24 O -0.41 -8.04 10.70 -148.98 -1.59 -9.63 16 25 C 0.03 0.33 11.01 113.37 1.25 1.58 16 26 N -0.29 -7.01 12.53 -47.49 -0.60 -7.61 16 27 N -0.38 -8.02 4.04 -366.13 -1.48 -9.50 16 28 C 0.09 0.94 11.30 127.77 1.44 2.38 16 29 H 0.05 1.78 7.88 -2.39 -0.02 1.77 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.05 1.53 5.63 -2.39 -0.01 1.52 16 32 H 0.07 2.76 4.74 -2.38 -0.01 2.75 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.26 15.41 8.73 -92.71 -0.81 14.60 16 35 H 0.41 15.40 7.99 -92.71 -0.74 14.66 16 36 H 0.43 7.95 7.46 -92.70 -0.69 7.25 16 37 H 0.16 4.85 5.83 -2.91 -0.02 4.83 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 45 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.10 0.74 7.52 -2.39 -0.02 0.72 16 Total: -1.00 -67.16 386.63 1.41 -65.76 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.59 Total: 33.96 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 7.58 Total: 11.66 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -5.70 Total: -115.35 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.69 Total: -44.78 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.80 Total: 48.76 kcal Total: -67.16 1.41 -65.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320887773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.044 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds