Wall clock time and date at job start Tue Mar 31 2020 20:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47727 * 2 1 4 4 N 1.30619 * 125.41999 * 90.02366 * 3 2 1 5 5 C 1.33698 * 108.99331 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.26905 * 180.02562 * 5 4 3 7 7 C 1.36345 * 107.45151 * 0.02562 * 5 4 3 8 8 C 1.46722 * 126.64018 * 180.02562 * 7 5 4 9 9 O 1.21684 * 120.00046 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99998 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46996 * 35.00503 * 11 10 8 13 13 C 1.52994 * 109.47359 * 275.00294 * 11 10 8 14 14 C 1.53006 * 109.46914 * 154.99872 * 11 10 8 15 15 N 1.46898 * 109.47138 * 305.00206 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47229 * 119.99992 * 24 22 20 27 27 H 1.48497 * 109.47429 * 239.99972 * 24 22 20 28 28 O 1.33665 * 125.42424 * 270.33636 * 3 2 1 29 29 H 1.09003 * 109.47083 * 59.99093 * 1 2 3 30 30 H 1.08994 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46529 * 300.00008 * 1 2 3 32 32 H 1.09008 * 109.47271 * 239.99948 * 2 1 3 33 33 H 1.09001 * 109.47494 * 120.00571 * 2 1 3 34 34 H 1.08997 * 109.47297 * 269.95832 * 6 5 4 35 35 H 1.08999 * 109.47209 * 29.96292 * 6 5 4 36 36 H 1.08999 * 109.46782 * 149.95663 * 6 5 4 37 37 H 0.97006 * 119.99482 * 359.97438 * 10 8 7 38 38 H 1.08990 * 109.47506 * 59.99735 * 13 11 10 39 39 H 1.09002 * 109.47542 * 180.02562 * 13 11 10 40 40 H 1.09006 * 109.46971 * 299.99615 * 13 11 10 41 41 H 1.08997 * 109.46770 * 185.00153 * 14 11 10 42 42 H 1.08995 * 109.47019 * 65.00366 * 14 11 10 43 43 H 1.00904 * 110.99913 * 303.95145 * 15 14 11 44 44 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 45 45 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 46 46 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1343 1.0644 5 6 2.7122 3.3436 0.6864 6 6 3.1125 4.4735 1.5997 7 6 2.7189 3.3671 -0.6769 8 6 3.1159 4.4918 -1.5313 9 8 3.4858 5.5366 -1.0289 10 7 3.0710 4.3678 -2.8726 11 6 3.4669 5.4910 -3.7257 12 1 4.2847 6.0353 -3.2534 13 6 2.2743 6.4295 -3.9193 14 6 3.9253 4.9613 -5.0860 15 7 4.9912 3.9694 -4.8913 16 6 5.4576 3.4383 -6.1791 17 6 6.5487 2.4267 -5.9398 18 8 6.9025 2.1728 -4.8078 19 7 7.1311 1.8041 -6.9837 20 6 8.1233 0.8834 -6.7659 21 1 8.4385 0.6574 -5.7579 22 6 8.7235 0.2412 -7.8419 23 7 8.3397 0.5159 -9.0684 24 14 10.0759 -1.0127 -7.5454 25 1 10.3208 -1.1409 -6.0862 26 1 9.6602 -2.3284 -8.0944 27 1 11.3214 -0.5663 -8.2195 28 8 2.2847 2.1533 -1.0892 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2403 5.0887 1.8204 35 1 3.5139 4.0659 2.5275 36 1 3.8730 5.0830 1.1117 37 1 2.7765 3.5348 -3.2730 38 1 1.9477 6.8068 -2.9503 39 1 2.5687 7.2650 -4.5544 40 1 1.4565 5.8852 -4.3917 41 1 4.3031 5.7871 -5.6888 42 1 3.0832 4.4943 -5.5966 43 1 5.7569 4.3604 -4.3632 44 1 4.6262 2.9607 -6.6977 45 1 5.8461 4.2537 -6.7892 46 1 6.8478 2.0069 -7.8889 47 1 8.7590 0.0678 -9.8197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321693868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:20 Heat of formation + Delta-G solvation = -62.902363 kcal Electronic energy + Delta-G solvation = -28972.764106 eV Core-core repulsion = 24770.845332 eV Total energy + Delta-G solvation = -4201.918775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.57903 -39.80780 -38.33826 -36.80529 -35.50294 -34.50144 -34.30898 -33.68709 -31.50614 -31.21564 -30.68637 -27.80201 -27.64707 -25.28162 -24.97274 -23.36697 -22.48347 -21.68206 -21.07110 -20.57434 -19.28569 -18.31370 -17.90301 -17.13489 -16.77868 -16.17611 -15.87174 -15.34182 -15.03225 -14.97458 -14.62556 -14.47840 -14.33859 -14.14021 -13.94421 -13.56717 -13.41489 -13.36013 -13.15085 -12.97106 -12.63899 -12.55986 -12.42966 -12.08903 -12.04415 -11.84831 -11.59040 -11.57525 -11.51505 -11.12638 -11.08178 -11.03459 -10.98015 -10.36354 -10.25098 -10.20203 -9.54753 -9.30681 -8.85584 -8.52145 -8.14708 -7.99072 -6.44606 -3.85398 0.69295 2.23344 2.24414 2.98001 3.07433 3.14327 3.25160 3.32544 3.65738 3.87386 4.01376 4.24916 4.51810 4.53584 4.69872 4.74268 4.77121 4.94238 5.00910 5.05776 5.18172 5.23713 5.31057 5.35823 5.39553 5.41236 5.48389 5.50395 5.52683 5.55752 5.71215 5.73354 5.75008 5.81239 5.84814 5.91297 5.98294 6.16219 6.21701 6.34398 7.09106 7.27046 7.51138 7.52871 7.54681 7.98657 8.03606 8.58218 9.15323 9.51233 10.02615 10.73197 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.002564 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.264364 B =10917.439246 C =12550.936938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.032 4.032 3 C 0.224 3.776 4 N -0.489 5.489 5 C 0.078 3.922 6 C -0.079 4.079 7 C -0.115 4.115 8 C 0.613 3.387 9 O -0.523 6.523 10 N -0.694 5.694 11 C 0.145 3.855 12 H 0.091 0.909 13 C -0.162 4.162 14 C 0.047 3.953 15 N -0.668 5.668 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 O -0.183 6.183 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.351 0.649 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 6.490 11.930 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C 0.018 3.982 4 N -0.219 5.219 5 C -0.046 4.046 6 C -0.136 4.136 7 C -0.170 4.170 8 C 0.398 3.602 9 O -0.402 6.402 10 N -0.344 5.344 11 C 0.040 3.960 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.083 4.083 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.207 1.207 28 O -0.070 6.070 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.486 6.227 13.483 22.942 hybrid contribution 0.997 -0.066 -1.916 2.161 sum -16.489 6.162 11.567 21.063 Atomic orbital electron populations 1.21782 0.92766 1.03238 1.02982 1.20211 0.97015 0.83895 1.05913 1.26557 0.96488 0.96531 0.78620 1.70333 1.18050 1.03617 1.29948 1.22050 0.97294 0.93982 0.91296 1.20370 1.02700 0.93077 0.97469 1.22881 1.12655 0.86344 0.95122 1.16250 0.77762 0.84375 0.81777 1.90831 1.48442 1.26907 1.74004 1.45729 1.66207 1.17658 1.04760 1.21048 0.97605 0.87029 0.90299 0.89126 1.22148 0.97942 0.99319 1.02638 1.22320 0.96209 0.94582 0.95164 1.60074 1.14747 1.37261 1.18001 1.21681 0.98161 0.97439 0.90916 1.19797 0.85900 0.85856 0.85922 1.90537 1.66194 1.67387 1.22483 1.41867 1.33677 1.36857 1.07644 1.19752 1.12057 1.15955 0.95052 0.87896 1.25263 0.99156 0.98904 0.94631 1.69621 1.43064 1.43474 0.98181 0.85803 0.80063 0.79746 0.78768 1.19202 1.20717 1.20740 1.84463 1.63235 1.22047 1.37220 0.92018 0.90598 0.91759 0.88168 0.87225 0.90205 0.90546 0.88590 0.75399 0.91746 0.91274 0.92208 0.93559 0.90338 0.82925 0.89570 0.93754 0.77477 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.15 0.37 -0.55 16 2 C -0.03 -0.25 6.56 -27.89 -0.18 -0.43 16 3 C 0.22 2.67 7.57 -12.79 -0.10 2.57 16 4 N -0.49 -6.58 11.26 -7.07 -0.08 -6.66 16 5 C 0.08 1.07 7.16 -82.46 -0.59 0.48 16 6 C -0.08 -0.89 9.87 36.01 0.36 -0.54 16 7 C -0.11 -1.62 7.18 -36.84 -0.26 -1.89 16 8 C 0.61 8.64 7.75 -12.83 -0.10 8.54 16 9 O -0.52 -8.12 14.46 5.20 0.08 -8.04 16 10 N -0.69 -8.51 4.80 -55.10 -0.26 -8.77 16 11 C 0.14 1.57 2.81 -67.93 -0.19 1.38 16 12 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 13 C -0.16 -1.42 9.48 37.15 0.35 -1.06 16 14 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 15 N -0.67 -10.18 5.85 -115.05 -0.67 -10.86 16 16 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 17 C 0.44 10.24 7.82 -10.99 -0.09 10.15 16 18 O -0.58 -15.78 15.78 5.55 0.09 -15.70 16 19 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 24 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 28 O -0.18 -2.44 10.57 4.43 0.05 -2.40 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.16 6.47 -51.93 -0.34 0.83 16 37 H 0.41 4.92 8.40 -40.82 -0.34 4.58 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.35 5.85 8.43 -39.29 -0.33 5.51 16 44 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -33.73 402.85 -6.98 -40.71 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -7.15 Total: 15.52 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.73 Total: 12.02 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.35 Total: -64.17 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: 0.21 Total: -26.13 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.73 -6.98 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321693868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.195 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds