Wall clock time and date at job start Tue Mar 31 2020 20:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.47727 * 2 1 4 4 N 1.30619 * 125.41999 * 90.02366 * 3 2 1 5 5 C 1.33698 * 108.99331 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.26905 * 180.02562 * 5 4 3 7 7 C 1.36345 * 107.45151 * 0.02562 * 5 4 3 8 8 C 1.46722 * 126.64018 * 180.02562 * 7 5 4 9 9 O 1.21684 * 120.00046 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99998 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00080 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46996 * 35.00503 * 11 10 8 13 13 C 1.52994 * 109.47359 * 275.00294 * 11 10 8 14 14 C 1.53006 * 109.46914 * 154.99872 * 11 10 8 15 15 N 1.46898 * 109.47138 * 305.00206 * 14 11 10 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47138 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47229 * 119.99992 * 24 22 20 27 27 H 1.48497 * 109.47429 * 239.99972 * 24 22 20 28 28 O 1.33665 * 125.42424 * 270.33636 * 3 2 1 29 29 H 1.09003 * 109.47083 * 59.99093 * 1 2 3 30 30 H 1.08994 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46529 * 300.00008 * 1 2 3 32 32 H 1.09008 * 109.47271 * 239.99948 * 2 1 3 33 33 H 1.09001 * 109.47494 * 120.00571 * 2 1 3 34 34 H 1.08997 * 109.47297 * 269.95832 * 6 5 4 35 35 H 1.08999 * 109.47209 * 29.96292 * 6 5 4 36 36 H 1.08999 * 109.46782 * 149.95663 * 6 5 4 37 37 H 0.97006 * 119.99482 * 359.97438 * 10 8 7 38 38 H 1.08990 * 109.47506 * 59.99735 * 13 11 10 39 39 H 1.09002 * 109.47542 * 180.02562 * 13 11 10 40 40 H 1.09006 * 109.46971 * 299.99615 * 13 11 10 41 41 H 1.08997 * 109.46770 * 185.00153 * 14 11 10 42 42 H 1.08995 * 109.47019 * 65.00366 * 14 11 10 43 43 H 1.00904 * 110.99913 * 303.95145 * 15 14 11 44 44 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 45 45 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 46 46 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 47 47 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1343 1.0644 5 6 2.7122 3.3436 0.6864 6 6 3.1125 4.4735 1.5997 7 6 2.7189 3.3671 -0.6769 8 6 3.1159 4.4918 -1.5313 9 8 3.4858 5.5366 -1.0289 10 7 3.0710 4.3678 -2.8726 11 6 3.4669 5.4910 -3.7257 12 1 4.2847 6.0353 -3.2534 13 6 2.2743 6.4295 -3.9193 14 6 3.9253 4.9613 -5.0860 15 7 4.9912 3.9694 -4.8913 16 6 5.4576 3.4383 -6.1791 17 6 6.5487 2.4267 -5.9398 18 8 6.9025 2.1728 -4.8078 19 7 7.1311 1.8041 -6.9837 20 6 8.1233 0.8834 -6.7659 21 1 8.4385 0.6574 -5.7579 22 6 8.7235 0.2412 -7.8419 23 7 8.3397 0.5159 -9.0684 24 14 10.0759 -1.0127 -7.5454 25 1 10.3208 -1.1409 -6.0862 26 1 9.6602 -2.3284 -8.0944 27 1 11.3214 -0.5663 -8.2195 28 8 2.2847 2.1533 -1.0892 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2403 5.0887 1.8204 35 1 3.5139 4.0659 2.5275 36 1 3.8730 5.0830 1.1117 37 1 2.7765 3.5348 -3.2730 38 1 1.9477 6.8068 -2.9503 39 1 2.5687 7.2650 -4.5544 40 1 1.4565 5.8852 -4.3917 41 1 4.3031 5.7871 -5.6888 42 1 3.0832 4.4943 -5.5966 43 1 5.7569 4.3604 -4.3632 44 1 4.6262 2.9607 -6.6977 45 1 5.8461 4.2537 -6.7892 46 1 6.8478 2.0069 -7.8889 47 1 8.7590 0.0678 -9.8197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321693868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:19 Heat of formation + Delta-G solvation = -91.044549 kcal Electronic energy + Delta-G solvation = -28973.984443 eV Core-core repulsion = 24770.845332 eV Total energy + Delta-G solvation = -4203.139111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.56263 -40.85350 -40.13156 -37.92612 -36.51700 -36.03534 -35.20262 -35.13745 -33.27583 -32.40748 -31.58577 -28.99465 -28.72685 -26.73138 -25.92602 -24.67415 -23.44586 -22.56841 -22.00120 -21.57137 -21.05671 -19.92675 -19.32847 -18.13879 -18.00161 -17.50338 -16.97572 -16.66977 -16.41483 -16.13768 -15.83409 -15.77517 -15.55251 -15.17923 -15.02485 -14.93172 -14.62273 -14.30762 -14.17039 -14.03996 -13.66040 -13.55947 -13.41461 -13.28253 -13.09773 -13.01940 -12.81535 -12.73466 -12.64110 -12.42003 -12.19076 -12.13291 -12.08203 -11.96258 -11.88614 -11.52713 -11.25808 -10.39842 -10.28778 -10.02429 -9.82972 -9.36808 -8.48295 -5.96746 -0.31741 1.25364 1.29437 1.35232 1.40839 1.54681 1.93653 2.04720 2.10943 2.27957 2.79400 2.88410 3.19282 3.48805 3.59284 3.63417 3.78961 4.11339 4.13379 4.17954 4.20470 4.30659 4.35889 4.41414 4.50998 4.57249 4.57593 4.62559 4.64675 4.71891 4.75368 4.79027 4.92307 4.94917 4.99618 5.00756 5.21339 5.26921 5.30782 5.39796 5.40960 5.85137 6.07369 6.26505 6.29486 6.51707 6.59208 6.95783 7.11939 7.55581 8.11423 8.69286 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010094 B = 0.002564 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.264364 B =10917.439246 C =12550.936938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C 0.228 3.772 4 N -0.510 5.510 5 C 0.069 3.931 6 C -0.075 4.075 7 C -0.140 4.140 8 C 0.609 3.391 9 O -0.545 6.545 10 N -0.688 5.688 11 C 0.145 3.855 12 H 0.074 0.926 13 C -0.153 4.153 14 C 0.053 3.947 15 N -0.683 5.683 16 C 0.067 3.933 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.270 1.270 27 H -0.270 1.270 28 O -0.191 6.191 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.340 0.660 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.659 6.193 10.966 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C 0.022 3.978 4 N -0.240 5.240 5 C -0.055 4.055 6 C -0.132 4.132 7 C -0.195 4.195 8 C 0.395 3.605 9 O -0.426 6.426 10 N -0.337 5.337 11 C 0.040 3.960 12 H 0.092 0.908 13 C -0.211 4.211 14 C -0.076 4.076 15 N -0.315 5.315 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.196 1.196 28 O -0.078 6.078 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.158 0.842 44 H 0.128 0.872 45 H 0.088 0.912 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.617 5.948 12.477 23.188 hybrid contribution 1.292 0.008 -1.580 2.041 sum -17.325 5.957 10.898 21.317 Atomic orbital electron populations 1.21768 0.91369 1.04643 1.02414 1.20543 0.98042 0.81398 1.07180 1.27569 0.94656 0.97566 0.77990 1.70365 1.19188 1.03780 1.30622 1.22479 0.96761 0.94622 0.91677 1.20392 1.02947 0.92529 0.97357 1.22952 1.14169 0.86880 0.95461 1.16331 0.77682 0.84193 0.82323 1.90806 1.49656 1.27678 1.74452 1.45774 1.65479 1.18120 1.04340 1.21152 0.98121 0.86816 0.89869 0.90770 1.22072 0.97193 0.99438 1.02414 1.22401 0.95270 0.94458 0.95426 1.60071 1.15067 1.39150 1.17218 1.21542 0.96481 0.96372 0.92170 1.20967 0.86172 0.85756 0.84739 1.90508 1.67701 1.68795 1.24221 1.41928 1.33715 1.37032 1.08354 1.19664 1.14138 1.18130 0.94328 0.90618 1.26003 1.00790 1.00133 0.94221 1.69670 1.43727 1.43998 0.98648 0.84904 0.77659 0.77801 0.78184 1.19999 1.19467 1.19568 1.84456 1.63547 1.21997 1.37819 0.92482 0.88170 0.92421 0.86934 0.85835 0.88836 0.89381 0.89711 0.75232 0.93148 0.89301 0.90931 0.91327 0.88495 0.84177 0.87230 0.91248 0.76888 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.03 -0.47 6.56 29.85 0.20 -0.28 16 3 C 0.23 5.38 7.57 88.29 0.67 6.05 16 4 N -0.51 -13.73 11.26 -291.05 -3.28 -17.00 16 5 C 0.07 1.92 7.16 41.83 0.30 2.22 16 6 C -0.08 -1.73 9.87 71.24 0.70 -1.02 16 7 C -0.14 -4.05 7.18 24.05 0.17 -3.88 16 8 C 0.61 17.58 7.75 86.46 0.67 18.25 16 9 O -0.55 -17.46 14.46 -4.30 -0.06 -17.52 16 10 N -0.69 -16.73 4.80 -446.47 -2.14 -18.87 16 11 C 0.14 2.97 2.81 44.99 0.13 3.10 16 12 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 13 C -0.15 -2.38 9.48 71.98 0.68 -1.69 16 14 C 0.05 1.03 5.24 86.31 0.45 1.48 16 15 N -0.68 -19.93 5.85 -517.92 -3.03 -22.96 16 16 C 0.07 2.11 6.17 85.56 0.53 2.64 16 17 C 0.44 20.36 7.82 87.66 0.69 21.04 16 18 O -0.63 -34.77 15.78 -3.06 -0.05 -34.81 16 19 N -0.57 -28.98 5.29 -306.99 -1.62 -30.60 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 24 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 O -0.19 -5.15 10.57 -7.06 -0.07 -5.22 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 2.14 6.47 -2.39 -0.02 2.13 16 37 H 0.41 9.69 8.40 -92.70 -0.78 8.91 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.34 11.25 8.43 -89.69 -0.76 10.49 16 44 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 47 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -74.66 402.85 -2.01 -76.67 By element: Atomic # 1 Polarization: 46.64 SS G_CDS: -1.24 Total: 45.40 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 7.18 Total: 28.88 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -9.79 Total: -138.25 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.19 Total: -57.56 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -74.66 -2.01 -76.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321693868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.378 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds