Wall clock time and date at job start Tue Mar 31 2020 20:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47091 * 120.00183 * 2 1 3 5 5 N 1.29948 * 126.28469 * 300.02334 * 4 2 1 6 6 O 1.21303 * 110.24669 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.55048 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47320 * 269.97414 * 8 7 6 10 10 N 1.46498 * 109.47492 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00115 * 180.02562 * 10 9 8 12 12 O 1.21343 * 119.99637 * 0.02562 * 11 10 9 13 13 C 1.49455 * 119.99925 * 180.02562 * 11 10 9 14 14 O 1.21345 * 119.99689 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99925 * 179.97438 * 13 11 10 16 16 C 1.46498 * 119.99724 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46765 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46967 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.47089 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00307 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99891 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00042 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99887 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47104 * 60.00130 * 23 21 19 25 25 H 1.48500 * 109.47155 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47479 * 300.00187 * 23 21 19 27 27 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47275 * 299.99918 * 1 2 3 30 30 H 1.09004 * 109.47233 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47275 * 240.00082 * 2 1 3 32 32 H 1.08993 * 109.47313 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47163 * 300.00502 * 3 2 1 34 34 H 1.09000 * 109.46958 * 59.99888 * 3 2 1 35 35 H 1.08995 * 109.47428 * 29.97302 * 8 7 6 36 36 H 1.08999 * 109.47183 * 149.97495 * 8 7 6 37 37 H 1.09000 * 109.47216 * 300.00452 * 9 8 7 38 38 H 1.08999 * 109.46926 * 59.99925 * 9 8 7 39 39 H 0.97008 * 119.99615 * 0.02562 * 10 9 8 40 40 H 0.97000 * 119.99979 * 0.02562 * 15 13 11 41 41 H 1.08995 * 109.47460 * 299.99730 * 16 15 13 42 42 H 1.08999 * 109.47370 * 60.00058 * 16 15 13 43 43 H 1.08994 * 109.47766 * 299.99965 * 17 16 15 44 44 H 1.09007 * 109.46966 * 60.00640 * 17 16 15 45 45 H 1.09000 * 109.47486 * 300.00569 * 18 17 16 46 46 H 1.08999 * 109.47058 * 60.00288 * 18 17 16 47 47 H 0.97003 * 120.00192 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3416 -1.1476 3.2215 7 6 3.0008 -2.0772 2.5235 8 6 3.8083 -3.2180 3.0870 9 6 5.2588 -2.7705 3.2783 10 7 6.0440 -3.8797 3.8256 11 6 7.3575 -3.7152 4.0785 12 8 7.8897 -2.6482 3.8533 13 6 8.1586 -4.8469 4.6363 14 8 7.6261 -5.9138 4.8619 15 7 9.4722 -4.6826 4.8887 16 6 10.2575 -5.7922 5.4349 17 6 11.7081 -5.3448 5.6259 18 6 12.5282 -6.5033 6.1969 19 6 13.9572 -6.0629 6.3844 20 1 14.2510 -5.0571 6.1229 21 6 14.8893 -6.9437 6.8909 22 7 14.5314 -8.1683 7.2099 23 14 16.6603 -6.3975 7.1240 24 1 16.7044 -5.2487 8.0641 25 1 17.4562 -7.5220 7.6781 26 1 17.2284 -5.9877 5.8146 27 7 2.8107 -1.8070 1.2545 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.3910 -3.5185 4.0480 36 1 3.7762 -4.0614 2.3972 37 1 5.6761 -2.4699 2.3173 38 1 5.2909 -1.9271 3.9681 39 1 5.6183 -4.7325 4.0060 40 1 9.8977 -3.8297 4.7087 41 1 9.8406 -6.0941 6.3957 42 1 10.2255 -6.6347 4.7441 43 1 12.1249 -5.0432 4.6650 44 1 11.7405 -4.5021 6.3166 45 1 12.1113 -6.8046 7.1579 46 1 12.4958 -7.3463 5.5066 47 1 15.1870 -8.7879 7.5665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322630721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:50 Heat of formation + Delta-G solvation = -29.668237 kcal Electronic energy + Delta-G solvation = -27156.955740 eV Core-core repulsion = 22956.478106 eV Total energy + Delta-G solvation = -4200.477635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.10798 -40.72047 -38.69016 -37.40879 -36.65002 -35.68619 -34.94081 -33.40805 -33.00970 -31.27507 -30.52506 -27.80977 -27.36962 -25.80767 -25.13239 -24.08651 -23.16059 -22.33318 -20.89644 -20.73561 -20.12064 -18.70342 -18.43292 -17.97511 -17.08703 -16.43699 -16.37081 -15.93139 -15.67211 -15.45004 -15.19031 -15.12096 -14.61916 -14.46448 -14.34775 -14.04006 -13.82950 -13.56681 -13.08872 -13.04672 -12.84928 -12.31846 -12.30893 -12.20475 -12.12926 -11.92168 -11.82422 -11.79273 -11.75820 -11.66462 -11.39643 -10.90309 -10.78300 -10.64450 -10.41166 -9.91995 -9.86345 -9.68349 -9.41781 -9.16238 -9.03014 -8.38782 -6.03770 -4.06926 0.59335 1.32439 1.68543 1.99321 2.43538 3.01066 3.13908 3.31837 3.36545 3.38639 3.47186 3.60901 4.01714 4.18578 4.30655 4.41162 4.41622 4.42641 4.45250 4.59543 4.84305 5.01532 5.07291 5.15299 5.18587 5.19913 5.24003 5.32259 5.36426 5.47162 5.55870 5.58239 5.66194 5.67804 5.75183 6.05144 6.21758 6.51492 6.62712 6.78211 6.92975 7.30633 7.59879 7.61072 7.66281 7.71590 7.94117 7.97960 8.35497 8.99333 9.57540 11.07456 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035749 B = 0.001302 C = 0.001274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.052989 B =21496.057378 C =21974.499712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.005 4.005 3 C -0.146 4.146 4 C 0.177 3.823 5 N -0.377 5.377 6 O 0.082 5.918 7 C 0.184 3.816 8 C -0.040 4.040 9 C 0.122 3.878 10 N -0.705 5.705 11 C 0.512 3.488 12 O -0.515 6.515 13 C 0.502 3.498 14 O -0.525 6.525 15 N -0.690 5.690 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 N -0.473 5.473 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.416 0.584 40 H 0.411 0.589 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.948 14.639 -13.094 35.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 C -0.204 4.204 4 C -0.096 4.096 5 N -0.083 5.083 6 O 0.023 5.977 7 C -0.037 4.037 8 C -0.079 4.079 9 C -0.002 4.002 10 N -0.360 5.360 11 C 0.293 3.707 12 O -0.390 6.390 13 C 0.281 3.719 14 O -0.402 6.402 15 N -0.342 5.342 16 C -0.009 4.009 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 N -0.207 5.207 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.253 0.747 40 H 0.247 0.753 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -30.303 15.110 -13.232 36.355 hybrid contribution 1.070 0.076 0.279 1.109 sum -29.233 15.186 -12.953 35.397 Atomic orbital electron populations 1.21858 0.92742 1.02620 1.03132 1.19602 0.96499 0.95525 0.90904 1.21861 1.01638 0.93813 1.03129 1.25885 0.96434 0.92655 0.94674 1.74616 1.17301 1.13486 1.02895 1.85329 1.47485 1.29637 1.35266 1.28297 0.95315 0.94053 0.86026 1.20344 0.92035 0.91581 1.03962 1.21307 0.88070 0.89890 1.00977 1.45555 1.08896 1.16651 1.64887 1.20359 0.82761 0.88659 0.78954 1.90784 1.70556 1.27222 1.50431 1.19899 0.83715 0.87919 0.80366 1.90766 1.70676 1.26973 1.51801 1.46078 1.08090 1.17774 1.62223 1.21864 0.92107 0.87991 0.98890 1.21935 0.91231 1.01673 1.01285 1.19026 0.93860 0.92163 0.96237 1.21167 0.93946 0.98278 1.42876 0.92621 1.25013 0.98968 0.94916 0.95440 1.69950 1.34634 1.05021 1.43692 0.86638 0.84609 0.78132 0.78499 1.20217 1.21261 1.20223 1.71933 1.16715 1.14114 1.17903 0.92261 0.91825 0.90886 0.87895 0.92133 0.90875 0.91813 0.86692 0.86015 0.89794 0.89937 0.74695 0.75265 0.90997 0.91006 0.92402 0.92409 0.96188 0.96191 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.18 37.16 0.34 -0.36 16 2 C -0.01 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -0.77 9.18 37.16 0.34 -0.43 16 4 C 0.18 1.52 6.72 -156.37 -1.05 0.47 16 5 N -0.38 -3.56 12.16 30.90 0.38 -3.18 16 6 O 0.08 0.69 11.31 18.10 0.20 0.89 16 7 C 0.18 1.29 7.77 -13.06 -0.10 1.19 16 8 C -0.04 -0.15 5.96 -27.88 -0.17 -0.32 16 9 C 0.12 0.75 5.66 -4.04 -0.02 0.73 16 10 N -0.70 -5.48 5.55 -60.73 -0.34 -5.82 16 11 C 0.51 5.94 7.89 -11.58 -0.09 5.85 16 12 O -0.52 -7.13 16.48 5.50 0.09 -7.04 16 13 C 0.50 6.85 7.89 -11.58 -0.09 6.76 16 14 O -0.53 -8.16 16.48 5.50 0.09 -8.07 16 15 N -0.69 -9.74 5.55 -60.73 -0.34 -10.08 16 16 C 0.11 1.86 5.67 -4.04 -0.02 1.84 16 17 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 N -0.47 -4.17 11.55 -9.87 -0.11 -4.28 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.42 2.53 7.95 -40.82 -0.32 2.21 16 40 H 0.41 5.31 7.94 -40.82 -0.32 4.98 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 407.67 15.07 6.14 6.14 Total: -1.00 -34.08 407.67 -7.41 -41.49 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.38 Total: -0.83 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.87 Total: 0.18 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.32 Total: -49.05 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.39 Total: -14.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.08 -7.41 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322630721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.821 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds