Wall clock time and date at job start Tue Mar 31 2020 20:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 C 1.50703 * 109.47091 * 120.00183 * 2 1 3 5 5 N 1.29948 * 126.28469 * 300.02334 * 4 2 1 6 6 O 1.21303 * 110.24669 * 180.02562 * 5 4 2 7 7 C 1.33643 * 109.81437 * 0.02562 * 6 5 4 8 8 C 1.50692 * 126.55048 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47320 * 269.97414 * 8 7 6 10 10 N 1.46498 * 109.47492 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00115 * 180.02562 * 10 9 8 12 12 O 1.21343 * 119.99637 * 0.02562 * 11 10 9 13 13 C 1.49455 * 119.99925 * 180.02562 * 11 10 9 14 14 O 1.21345 * 119.99689 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99925 * 179.97438 * 13 11 10 16 16 C 1.46498 * 119.99724 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46765 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46967 * 179.97438 * 17 16 15 19 19 C 1.50705 * 109.47089 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00307 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99891 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00042 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99887 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47104 * 60.00130 * 23 21 19 25 25 H 1.48500 * 109.47155 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47479 * 300.00187 * 23 21 19 27 27 N 1.31126 * 106.89467 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47275 * 299.99918 * 1 2 3 30 30 H 1.09004 * 109.47233 * 60.00162 * 1 2 3 31 31 H 1.09000 * 109.47275 * 240.00082 * 2 1 3 32 32 H 1.08993 * 109.47313 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47163 * 300.00502 * 3 2 1 34 34 H 1.09000 * 109.46958 * 59.99888 * 3 2 1 35 35 H 1.08995 * 109.47428 * 29.97302 * 8 7 6 36 36 H 1.08999 * 109.47183 * 149.97495 * 8 7 6 37 37 H 1.09000 * 109.47216 * 300.00452 * 9 8 7 38 38 H 1.08999 * 109.46926 * 59.99925 * 9 8 7 39 39 H 0.97008 * 119.99615 * 0.02562 * 10 9 8 40 40 H 0.97000 * 119.99979 * 0.02562 * 15 13 11 41 41 H 1.08995 * 109.47460 * 299.99730 * 16 15 13 42 42 H 1.08999 * 109.47370 * 60.00058 * 16 15 13 43 43 H 1.08994 * 109.47766 * 299.99965 * 17 16 15 44 44 H 1.09007 * 109.46966 * 60.00640 * 17 16 15 45 45 H 1.09000 * 109.47486 * 300.00569 * 18 17 16 46 46 H 1.08999 * 109.47058 * 60.00288 * 18 17 16 47 47 H 0.97003 * 120.00192 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3749 2.4632 6 8 2.3416 -1.1476 3.2215 7 6 3.0008 -2.0772 2.5235 8 6 3.8083 -3.2180 3.0870 9 6 5.2588 -2.7705 3.2783 10 7 6.0440 -3.8797 3.8256 11 6 7.3575 -3.7152 4.0785 12 8 7.8897 -2.6482 3.8533 13 6 8.1586 -4.8469 4.6363 14 8 7.6261 -5.9138 4.8619 15 7 9.4722 -4.6826 4.8887 16 6 10.2575 -5.7922 5.4349 17 6 11.7081 -5.3448 5.6259 18 6 12.5282 -6.5033 6.1969 19 6 13.9572 -6.0629 6.3844 20 1 14.2510 -5.0571 6.1229 21 6 14.8893 -6.9437 6.8909 22 7 14.5314 -8.1683 7.2099 23 14 16.6603 -6.3975 7.1240 24 1 16.7044 -5.2487 8.0641 25 1 17.4562 -7.5220 7.6781 26 1 17.2284 -5.9877 5.8146 27 7 2.8107 -1.8070 1.2545 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.3910 -3.5185 4.0480 36 1 3.7762 -4.0614 2.3972 37 1 5.6761 -2.4699 2.3173 38 1 5.2909 -1.9271 3.9681 39 1 5.6183 -4.7325 4.0060 40 1 9.8977 -3.8297 4.7087 41 1 9.8406 -6.0941 6.3957 42 1 10.2255 -6.6347 4.7441 43 1 12.1249 -5.0432 4.6650 44 1 11.7405 -4.5021 6.3166 45 1 12.1113 -6.8046 7.1579 46 1 12.4958 -7.3463 5.5066 47 1 15.1870 -8.7879 7.5665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322630721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:49 Heat of formation + Delta-G solvation = -55.790323 kcal Electronic energy + Delta-G solvation = -27158.088479 eV Core-core repulsion = 22956.478106 eV Total energy + Delta-G solvation = -4201.610374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.71613 -41.72526 -39.73125 -37.93573 -37.41873 -36.95243 -35.64392 -35.15751 -33.65441 -33.01928 -31.14825 -28.97695 -28.19933 -26.83961 -25.69960 -25.30073 -24.06341 -23.31544 -22.34256 -21.57868 -20.95695 -19.61355 -19.19375 -18.59846 -18.48762 -17.96677 -17.31203 -16.83952 -16.49345 -16.44777 -16.15904 -16.12765 -15.81544 -15.57300 -15.03734 -14.89044 -14.60314 -14.46795 -14.24635 -13.76775 -13.71969 -13.55884 -13.48146 -13.24179 -12.88849 -12.73850 -12.71702 -12.68764 -12.54457 -12.53183 -12.41997 -12.31864 -12.14566 -11.89882 -11.67419 -11.54244 -11.23600 -11.00956 -10.72141 -10.52665 -10.42248 -10.25739 -8.18047 -6.28851 0.02068 0.31175 1.05231 1.23786 1.43340 1.45525 1.53425 1.78043 2.11291 2.42352 2.46899 2.70371 2.98814 3.16040 3.40912 3.58299 3.74782 3.91015 3.98550 4.00748 4.10794 4.17831 4.21164 4.43538 4.55268 4.61323 4.63478 4.65727 4.77008 4.80528 4.81788 4.89441 4.91699 4.94255 5.01828 5.03509 5.17162 5.18932 5.25186 5.25358 5.53199 5.73028 5.86159 5.86355 6.24468 6.33195 6.70166 6.88041 6.91403 7.08046 7.40574 8.93582 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035749 B = 0.001302 C = 0.001274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.052989 B =21496.057378 C =21974.499712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.009 4.009 3 C -0.142 4.142 4 C 0.169 3.831 5 N -0.399 5.399 6 O 0.075 5.925 7 C 0.193 3.807 8 C -0.031 4.031 9 C 0.124 3.876 10 N -0.683 5.683 11 C 0.518 3.482 12 O -0.540 6.540 13 C 0.503 3.497 14 O -0.544 6.544 15 N -0.688 5.688 16 C 0.127 3.873 17 C -0.107 4.107 18 C 0.025 3.975 19 C -0.544 4.544 20 H 0.063 0.937 21 C 0.001 3.999 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.285 1.285 26 H -0.267 1.267 27 N -0.496 5.496 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.427 0.573 40 H 0.419 0.581 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.066 0.934 45 H -0.003 1.003 46 H -0.003 1.003 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.519 15.661 -13.820 36.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.104 4.104 5 N -0.107 5.107 6 O 0.017 5.983 7 C -0.028 4.028 8 C -0.069 4.069 9 C 0.000 4.000 10 N -0.338 5.338 11 C 0.298 3.702 12 O -0.417 6.417 13 C 0.284 3.716 14 O -0.422 6.422 15 N -0.340 5.340 16 C 0.004 3.996 17 C -0.145 4.145 18 C -0.013 4.013 19 C -0.582 4.582 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.573 5.573 23 Si 0.788 3.212 24 H -0.192 1.192 25 H -0.211 1.211 26 H -0.192 1.192 27 N -0.230 5.230 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.266 0.734 40 H 0.256 0.744 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.015 0.985 46 H 0.015 0.985 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -30.912 16.138 -13.965 37.563 hybrid contribution 1.184 -0.273 0.491 1.311 sum -29.727 15.865 -13.474 36.290 Atomic orbital electron populations 1.21826 0.91842 1.02483 1.03645 1.19784 0.97231 0.95716 0.90167 1.21836 1.01004 0.93475 1.03671 1.26390 0.96096 0.92668 0.95226 1.74605 1.18394 1.14348 1.03357 1.85296 1.47769 1.29894 1.35299 1.28829 0.94521 0.93859 0.85638 1.20471 0.89908 0.90639 1.05926 1.21339 0.89096 0.89264 1.00291 1.45452 1.07618 1.17587 1.63107 1.19897 0.83665 0.87468 0.79165 1.90786 1.71242 1.27716 1.51937 1.20245 0.83443 0.88264 0.79675 1.90759 1.70999 1.27937 1.52532 1.45891 1.08395 1.17404 1.62289 1.21473 0.90961 0.88455 0.98675 1.21646 0.91916 0.99493 1.01435 1.18929 0.93963 0.93533 0.94844 1.21667 0.95370 0.98693 1.42511 0.91831 1.25944 1.03694 0.94916 0.95129 1.70085 1.36188 1.06284 1.44722 0.85531 0.78987 0.77852 0.78857 1.19192 1.21060 1.19211 1.71949 1.17496 1.14657 1.18907 0.92699 0.92808 0.88825 0.87224 0.93040 0.88757 0.92803 0.83719 0.84225 0.90736 0.90043 0.73406 0.74383 0.91575 0.91622 0.91524 0.91507 0.98478 0.98499 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.18 71.98 0.66 -0.57 16 2 C -0.01 -0.10 3.39 -11.54 -0.04 -0.14 16 3 C -0.14 -1.39 9.18 71.98 0.66 -0.73 16 4 C 0.17 2.86 6.72 138.46 0.93 3.79 16 5 N -0.40 -7.46 12.16 -60.31 -0.73 -8.20 16 6 O 0.08 1.20 11.31 74.83 0.85 2.05 16 7 C 0.19 2.43 7.77 88.38 0.69 3.12 16 8 C -0.03 -0.15 5.96 29.85 0.18 0.03 16 9 C 0.12 1.28 5.66 86.38 0.49 1.77 16 10 N -0.68 -9.16 5.55 -464.41 -2.58 -11.74 16 11 C 0.52 11.23 7.89 87.27 0.69 11.91 16 12 O -0.54 -14.27 16.48 -3.22 -0.05 -14.32 16 13 C 0.50 13.15 7.89 87.27 0.69 13.83 16 14 O -0.54 -16.28 16.48 -3.23 -0.05 -16.33 16 15 N -0.69 -18.70 5.55 -464.42 -2.58 -21.28 16 16 C 0.13 4.14 5.67 86.38 0.49 4.63 16 17 C -0.11 -4.00 5.27 30.59 0.16 -3.84 16 18 C 0.03 1.26 4.97 29.85 0.15 1.41 16 19 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 20 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 21 C 0.00 0.06 5.46 84.66 0.46 0.53 16 22 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 23 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 N -0.50 -8.34 11.55 -303.21 -3.50 -11.84 16 28 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.43 4.07 7.95 -92.70 -0.74 3.33 16 40 H 0.42 10.27 7.94 -92.71 -0.74 9.53 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -73.98 407.67 -0.38 -74.35 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.48 Total: 11.57 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.44 Total: 5.94 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -9.10 Total: -108.74 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: 0.74 Total: -28.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.98 -0.38 -74.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322630721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.562 kcal (2) G-P(sol) polarization free energy of solvation -73.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds