Wall clock time and date at job start Tue Mar 31 2020 21:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.52995 * 109.47296 * 120.00584 * 2 1 3 5 5 H 1.09007 * 109.47418 * 186.77488 * 4 2 1 6 6 C 1.53001 * 109.46856 * 306.77487 * 4 2 1 7 7 O 1.42902 * 109.47039 * 293.05730 * 6 4 2 8 8 C 1.52998 * 109.47490 * 66.77260 * 4 2 1 9 9 N 1.46509 * 109.46970 * 64.18014 * 8 4 2 10 10 C 1.34773 * 119.99734 * 175.50621 * 9 8 4 11 11 O 1.21357 * 120.00390 * 0.02562 * 10 9 8 12 12 C 1.49344 * 119.99763 * 180.02562 * 10 9 8 13 13 O 1.21387 * 120.00151 * 359.97438 * 12 10 9 14 14 N 1.34772 * 120.00348 * 179.97438 * 12 10 9 15 15 C 1.39930 * 120.00469 * 179.97438 * 14 12 10 16 16 C 1.40461 * 125.97919 * 359.97438 * 15 14 12 17 17 C 1.35215 * 107.86814 * 179.73847 * 16 15 14 18 18 N 1.34987 * 107.87250 * 0.41904 * 17 16 15 19 19 C 1.46502 * 125.96706 * 179.84186 * 18 17 16 20 20 C 1.50704 * 109.47268 * 124.71713 * 19 18 17 21 21 H 1.08006 * 119.99425 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00223 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99676 * 179.72505 * 22 20 19 24 24 Si 1.86801 * 119.99881 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46841 * 269.72823 * 24 22 20 26 26 H 1.48500 * 109.47232 * 29.72463 * 24 22 20 27 27 H 1.48495 * 109.47180 * 149.72521 * 24 22 20 28 28 N 1.31272 * 125.98604 * 179.97438 * 15 14 12 29 29 H 1.09005 * 109.46508 * 306.45443 * 1 2 3 30 30 H 1.08994 * 109.47130 * 66.45381 * 1 2 3 31 31 H 1.08998 * 109.46995 * 186.45824 * 1 2 3 32 32 H 1.09005 * 109.46504 * 240.00530 * 2 1 3 33 33 H 1.09001 * 109.47421 * 170.87968 * 3 2 1 34 34 H 1.09002 * 109.47606 * 290.88311 * 3 2 1 35 35 H 1.09000 * 109.46761 * 50.88154 * 3 2 1 36 36 H 1.08993 * 109.47575 * 53.06333 * 6 4 2 37 37 H 1.09009 * 109.46775 * 173.06334 * 6 4 2 38 38 H 0.96699 * 113.99530 * 180.02562 * 7 6 4 39 39 H 1.09002 * 109.47202 * 304.18132 * 8 4 2 40 40 H 1.08999 * 109.47446 * 184.17605 * 8 4 2 41 41 H 0.96999 * 119.99462 * 355.50280 * 9 8 4 42 42 H 0.96999 * 120.00218 * 359.97438 * 14 12 10 43 43 H 1.08004 * 126.06686 * 0.02562 * 16 15 14 44 44 H 1.08001 * 126.06046 * 180.28570 * 17 16 15 45 45 H 1.08998 * 109.47235 * 4.71549 * 19 18 17 46 46 H 1.09004 * 109.47056 * 244.71616 * 19 18 17 47 47 H 0.97003 * 119.99332 * 180.26904 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1234 -0.6176 1.3118 6 6 1.3959 -0.1051 2.4926 7 8 1.8664 1.2339 2.6589 8 6 1.6738 -2.2046 1.1669 9 7 2.3705 -2.8175 0.0332 10 6 2.2704 -4.1442 -0.1818 11 8 1.6029 -4.8311 0.5634 12 6 2.9810 -4.7691 -1.3372 13 8 3.6484 -4.0820 -2.0829 14 7 2.8815 -6.0959 -1.5519 15 6 3.5469 -6.6813 -2.6348 16 6 4.3480 -6.0090 -3.5724 17 6 4.8127 -6.9239 -4.4529 18 7 4.3200 -8.1291 -4.0968 19 6 4.5711 -9.3984 -4.7839 20 6 5.1257 -10.3994 -3.8033 21 1 5.2765 -10.1179 -2.7715 22 6 5.4406 -11.6743 -4.2232 23 7 5.9296 -12.5461 -3.3686 24 14 5.1791 -12.1612 -6.0076 25 1 3.8123 -12.7180 -6.1735 26 1 5.3353 -10.9659 -6.8748 27 1 6.1815 -13.1867 -6.3929 28 7 3.5317 -7.9550 -2.9522 29 1 -0.3632 0.6107 0.8266 30 1 -0.3633 0.4105 -0.9420 31 1 -0.3633 -1.0211 0.1156 32 1 1.8933 -0.5138 -0.8901 33 1 3.1178 1.4468 0.1629 34 1 1.8159 1.9072 -0.9601 35 1 1.5499 2.0011 0.7973 36 1 0.3124 -0.0976 2.3746 37 1 1.6618 -0.6952 3.3698 38 1 1.4988 1.6870 3.4300 39 1 0.5972 -2.3059 1.0296 40 1 1.9711 -2.7039 2.0890 41 1 2.9037 -2.2684 -0.5627 42 1 2.3485 -6.6450 -0.9559 43 1 4.5594 -4.9499 -3.5848 44 1 5.4611 -6.7251 -5.2934 45 1 5.2901 -9.2405 -5.5877 46 1 3.6376 -9.7769 -5.2006 47 1 6.1548 -13.4418 -3.6650 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323140589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:09 Heat of formation + Delta-G solvation = -37.301884 kcal Electronic energy + Delta-G solvation = -28539.792628 eV Core-core repulsion = 24338.983974 eV Total energy + Delta-G solvation = -4200.808655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.17172 -40.37782 -39.26431 -38.34800 -36.22911 -35.19696 -34.19300 -33.29624 -31.35185 -30.76593 -29.52482 -27.63513 -27.53941 -26.59712 -24.54337 -23.33738 -22.48852 -21.36476 -20.36644 -19.82131 -19.48166 -18.47411 -17.76632 -17.15747 -16.92247 -16.74869 -16.50719 -16.10141 -15.67382 -15.29673 -15.08635 -14.61456 -14.48605 -14.17161 -13.93497 -13.65743 -13.54615 -13.40752 -13.21030 -12.77491 -12.61196 -12.55396 -12.45551 -12.39253 -12.19836 -11.98226 -11.65284 -11.19383 -11.12383 -11.08073 -10.90419 -10.72171 -10.60017 -10.25140 -10.17595 -10.03398 -9.65239 -9.57098 -9.55997 -8.78678 -8.31206 -7.66746 -6.25122 -4.28016 1.15615 1.97720 2.57126 2.96583 3.05141 3.15368 3.19661 3.24182 3.60040 3.63631 3.81974 4.17446 4.21030 4.25401 4.34874 4.52617 4.83457 4.88032 4.89200 4.95753 5.02143 5.06279 5.15216 5.31449 5.37956 5.41279 5.56501 5.60166 5.63954 5.65065 5.80555 5.86608 5.98675 6.00560 6.16700 6.22874 6.31829 6.38800 6.58120 6.82538 7.12270 7.16061 7.18629 7.33909 7.58672 7.72597 7.89644 8.29551 8.44679 8.84242 9.29224 10.87476 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.032251 B = 0.001776 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.990253 B =15757.631215 C =16168.128419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.144 4.144 4 C -0.099 4.099 5 H 0.089 0.911 6 C 0.082 3.918 7 O -0.563 6.563 8 C 0.121 3.879 9 N -0.697 5.697 10 C 0.517 3.483 11 O -0.514 6.514 12 C 0.513 3.487 13 O -0.500 6.500 14 N -0.598 5.598 15 C 0.254 3.746 16 C -0.282 4.282 17 C 0.054 3.946 18 N -0.315 5.315 19 C 0.231 3.769 20 C -0.537 4.537 21 H 0.086 0.914 22 C 0.077 3.923 23 N -0.886 5.886 24 Si 0.875 3.125 25 H -0.271 1.271 26 H -0.265 1.265 27 H -0.280 1.280 28 N -0.287 5.287 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.377 0.623 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.415 0.585 42 H 0.424 0.576 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.055 0.945 46 H 0.039 0.961 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 28.221 8.436 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.118 4.118 5 H 0.107 0.893 6 C 0.003 3.997 7 O -0.369 6.369 8 C -0.002 4.002 9 N -0.352 5.352 10 C 0.297 3.703 11 O -0.389 6.389 12 C 0.293 3.707 13 O -0.373 6.373 14 N -0.246 5.246 15 C 0.000 4.000 16 C -0.313 4.313 17 C -0.096 4.096 18 N -0.096 5.096 19 C 0.112 3.888 20 C -0.575 4.575 21 H 0.104 0.896 22 C -0.127 4.127 23 N -0.523 5.523 24 Si 0.701 3.299 25 H -0.197 1.197 26 H -0.190 1.190 27 H -0.206 1.206 28 N -0.118 5.118 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.252 0.748 42 H 0.262 0.738 43 H 0.180 0.820 44 H 0.189 0.811 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.029 26.603 8.176 29.583 hybrid contribution -0.029 0.277 -0.542 0.609 sum -10.058 26.880 7.634 29.698 Atomic orbital electron populations 1.21982 0.95184 1.01803 1.02027 1.21121 0.96065 0.97129 0.96700 1.21895 1.01320 0.95306 1.01534 1.21466 1.02149 0.92693 0.95452 0.89263 1.22088 0.97743 0.83445 0.96389 1.86565 1.72416 1.26638 1.51242 1.21445 0.97678 0.91851 0.89248 1.45642 1.51298 1.07441 1.30832 1.19854 0.81954 0.83128 0.85404 1.90801 1.39524 1.61828 1.46730 1.19902 0.82522 0.82348 0.85912 1.90709 1.38822 1.61615 1.46118 1.41992 1.47998 1.07527 1.27120 1.19017 0.98257 0.91712 0.90972 1.21539 1.08920 1.01617 0.99225 1.22576 1.00528 0.85334 1.01114 1.48701 1.34190 1.07813 1.18941 1.20106 0.97333 0.78582 0.92767 1.21102 1.43637 0.95188 0.97559 0.89594 1.24835 0.94325 0.95900 0.97682 1.69872 1.42356 1.05432 1.34645 0.86886 0.78834 0.79210 0.84976 1.19685 1.18962 1.20563 1.77467 1.17913 1.13324 1.03069 0.92328 0.92523 0.92488 0.91124 0.92916 0.93610 0.90612 0.92674 0.93407 0.77624 0.90334 0.90356 0.74805 0.73821 0.81962 0.81122 0.92735 0.94300 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.34 37.16 0.31 -0.55 16 2 C -0.09 -0.55 2.61 -90.62 -0.24 -0.79 16 3 C -0.14 -0.93 8.30 37.16 0.31 -0.62 16 4 C -0.10 -0.56 2.04 -90.62 -0.18 -0.75 16 5 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 6 C 0.08 0.37 6.08 37.16 0.23 0.59 16 7 O -0.56 -2.70 10.57 -35.23 -0.37 -3.08 16 8 C 0.12 0.84 4.95 -4.04 -0.02 0.82 16 9 N -0.70 -6.18 5.26 -60.76 -0.32 -6.50 16 10 C 0.52 6.25 7.89 -11.64 -0.09 6.15 16 11 O -0.51 -7.22 16.47 5.49 0.09 -7.13 16 12 C 0.51 7.36 7.85 -11.64 -0.09 7.26 16 13 O -0.50 -7.67 13.60 5.46 0.07 -7.59 16 14 N -0.60 -9.68 5.43 -11.58 -0.06 -9.74 16 15 C 0.25 4.99 8.10 -154.55 -1.25 3.74 16 16 C -0.28 -5.22 9.60 -39.82 -0.38 -5.60 16 17 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 18 N -0.31 -6.98 3.67 -62.56 -0.23 -7.21 16 19 C 0.23 5.38 5.33 -5.19 -0.03 5.35 16 20 C -0.54 -15.04 9.79 -34.44 -0.34 -15.38 16 21 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 22 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 23 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 24 Si 0.87 19.99 27.47 -169.99 -4.67 15.32 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 N -0.29 -6.53 12.42 31.41 0.39 -6.14 16 29 H 0.06 0.29 6.54 -51.93 -0.34 -0.05 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 32 H 0.07 0.46 6.89 -51.93 -0.36 0.11 16 33 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 36 H 0.06 0.21 6.07 -51.93 -0.32 -0.11 16 37 H 0.05 0.19 8.14 -51.92 -0.42 -0.23 16 38 H 0.38 0.36 9.12 45.56 0.42 0.77 16 39 H 0.08 0.54 6.33 -51.93 -0.33 0.21 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 3.30 6.92 -40.82 -0.28 3.02 16 42 H 0.42 6.34 8.29 -40.82 -0.34 6.00 16 43 H 0.16 2.80 5.91 -52.48 -0.31 2.49 16 44 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 45 H 0.05 1.16 7.13 -51.93 -0.37 0.79 16 46 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 47 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 383.57 15.07 5.78 5.78 Total: -1.00 -34.28 383.57 -6.42 -40.70 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.80 Total: 8.20 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.07 Total: 3.08 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.55 Total: -55.27 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.21 Total: -17.80 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.28 -6.42 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323140589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.400 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds