Wall clock time and date at job start Tue Mar 31 2020 21:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1
5 5 O 1.42903 * 109.46930 * 65.00104 * 3 2 1
6 6 C 1.52999 * 109.47451 * 184.99880 * 3 2 1
7 7 C 1.52999 * 109.46885 * 174.99977 * 6 3 2
8 8 N 1.46503 * 109.46857 * 179.97438 * 7 6 3
9 9 C 1.34780 * 119.99993 * 179.97438 * 8 7 6
10 10 O 1.21367 * 120.00142 * 0.02562 * 9 8 7
11 11 C 1.49304 * 119.99977 * 180.02562 * 9 8 7
12 12 O 1.21390 * 120.00025 * 0.02562 * 11 9 8
13 13 N 1.34774 * 120.00093 * 180.02562 * 11 9 8
14 14 C 1.39197 * 120.00431 * 180.02562 * 13 11 9
15 15 C 1.36220 * 126.26829 * 359.68584 * 14 13 11
16 16 C 1.39688 * 107.85621 * 179.84457 * 15 14 13
17 17 C 1.50702 * 125.77121 * 180.13018 * 16 15 14
18 18 N 1.30849 * 108.46233 * 0.42737 * 16 15 14
19 19 N 1.35848 * 126.27689 * 179.97438 * 14 13 11
20 20 C 1.46505 * 126.09588 * 359.97438 * 19 14 13
21 21 C 1.50700 * 109.47049 * 90.00130 * 20 19 14
22 22 H 1.08001 * 119.99709 * 359.97438 * 21 20 19
23 23 C 1.37874 * 119.99913 * 179.97438 * 21 20 19
24 24 N 1.31514 * 120.00127 * 0.02562 * 23 21 20
25 25 Si 1.86802 * 120.00143 * 179.97438 * 23 21 20
26 26 H 1.48501 * 109.46744 * 0.02562 * 25 23 21
27 27 H 1.48497 * 109.47166 * 120.00014 * 25 23 21
28 28 H 1.48493 * 109.47655 * 240.00672 * 25 23 21
29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3
34 34 H 0.96694 * 114.00128 * 60.00073 * 5 3 2
35 35 H 1.08991 * 109.47337 * 295.00324 * 6 3 2
36 36 H 1.09005 * 109.46709 * 55.00519 * 6 3 2
37 37 H 1.08995 * 109.47875 * 300.00149 * 7 6 3
38 38 H 1.09005 * 109.47529 * 60.00752 * 7 6 3
39 39 H 0.97002 * 120.00069 * 0.02562 * 8 7 6
40 40 H 0.97002 * 119.99821 * 0.02562 * 13 11 9
41 41 H 1.08002 * 126.06944 * 359.97291 * 15 14 13
42 42 H 1.09006 * 109.47007 * 270.32303 * 17 16 15
43 43 H 1.09003 * 109.47235 * 30.31947 * 17 16 15
44 44 H 1.08998 * 109.47260 * 150.32228 * 17 16 15
45 45 H 1.09001 * 109.47286 * 210.00121 * 20 19 14
46 46 H 1.08997 * 109.46867 * 330.00196 * 20 19 14
47 47 H 0.97003 * 120.00081 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8417
5 8 1.6620 2.0813 1.2211
6 6 3.5648 1.4443 -0.1257
7 6 4.0644 2.8850 -0.2511
8 7 5.5245 2.8868 -0.3708
9 6 6.1891 4.0529 -0.4942
10 8 5.5781 5.1014 -0.5056
11 6 7.6771 4.0547 -0.6168
12 8 8.2883 3.0059 -0.6058
13 7 8.3418 5.2207 -0.7396
14 6 9.7290 5.2224 -0.8544
15 6 10.5392 4.1274 -0.8517
16 6 11.8569 4.5691 -0.9924
17 6 13.0801 3.6903 -1.0417
18 7 11.8502 5.8754 -1.0679
19 7 10.5234 6.3167 -0.9843
20 6 10.0728 7.7100 -1.0293
21 6 10.0347 8.2710 0.3689
22 1 10.3175 7.6515 1.2072
23 6 9.6389 9.5751 0.5779
24 7 9.2941 10.3293 -0.4428
25 14 9.5910 10.2703 2.3111
26 1 10.0223 9.2264 3.2752
27 1 10.5063 11.4361 2.4023
28 1 8.2070 10.7011 2.6337
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 1.8933 -0.5138 -0.8900
34 1 2.0141 1.6542 2.0139
35 1 4.0029 0.9836 0.7596
36 1 3.8570 0.8801 -1.0114
37 1 3.6263 3.3459 -1.1364
38 1 3.7723 3.4494 0.6346
39 1 6.0129 2.0488 -0.3621
40 1 7.8534 6.0588 -0.7479
41 1 10.2193 3.1000 -0.7593
42 1 13.4592 3.5382 -0.0310
43 1 12.8183 2.7273 -1.4801
44 1 13.8476 4.1695 -1.6493
45 1 10.7626 8.2956 -1.6370
46 1 9.0752 7.7553 -1.4662
47 1 9.0153 11.2467 -0.2957
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001324218396.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:30:31
Heat of formation + Delta-G solvation = -83.107915 kcal
Electronic energy + Delta-G solvation = -28656.680244 eV
Core-core repulsion = 24453.885291 eV
Total energy + Delta-G solvation = -4202.794953 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.63761 -41.52474 -39.84180 -39.06224 -36.82675 -36.06369 -35.58983 -33.86922
-33.73219 -31.93719 -30.87666 -30.09877 -27.84471 -27.55150 -25.62394 -24.70499
-23.06501 -22.52174 -22.11597 -21.43458 -20.91920 -19.33091 -18.89203 -18.24310
-17.88650 -17.50945 -17.15876 -16.84669 -16.80664 -16.53096 -16.20755 -15.91004
-15.55183 -15.40826 -15.02812 -14.65002 -14.62302 -14.45555 -14.07698 -13.95671
-13.60827 -13.52454 -13.44724 -13.13995 -12.99417 -12.90177 -12.81844 -12.71871
-12.54673 -12.34053 -12.26946 -12.07372 -11.79633 -11.72820 -11.63465 -11.42805
-11.00840 -10.79087 -10.71568 -10.39023 -9.69534 -9.19049 -8.39365 -6.56884
-0.06122 0.80676 1.08565 1.33786 1.35157 1.47388 1.78899 1.81650
2.10200 2.29040 2.41679 2.91306 3.15213 3.49081 3.74731 3.78737
3.94307 4.09139 4.13305 4.27727 4.28157 4.48949 4.55066 4.64804
4.66150 4.68739 4.74069 4.81252 4.90110 4.92717 4.93678 4.98820
5.03608 5.13840 5.15657 5.16742 5.20497 5.37332 5.44035 5.47689
5.72958 5.77860 5.92908 5.96566 6.17212 6.45289 6.58509 6.74923
6.91166 6.94977 7.15037 8.67686
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.010686 B = 0.002480 C = 0.002093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2619.722530 B =11289.739330 C =13376.821369
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.150 4.150
3 C 0.110 3.890
4 H 0.093 0.907
5 O -0.580 6.580
6 C -0.154 4.154
7 C 0.117 3.883
8 N -0.677 5.677
9 C 0.519 3.481
10 O -0.539 6.539
11 C 0.517 3.483
12 O -0.498 6.498
13 N -0.616 5.616
14 C 0.287 3.713
15 C -0.290 4.290
16 C 0.059 3.941
17 C -0.061 4.061
18 N -0.322 5.322
19 N -0.367 5.367
20 C 0.271 3.729
21 C -0.556 4.556
22 H 0.049 0.951
23 C 0.024 3.976
24 N -0.914 5.914
25 Si 0.971 3.029
26 H -0.274 1.274
27 H -0.271 1.271
28 H -0.269 1.269
29 H 0.051 0.949
30 H 0.059 0.941
31 H 0.050 0.950
32 H 0.077 0.923
33 H 0.083 0.917
34 H 0.387 0.613
35 H 0.092 0.908
36 H 0.099 0.901
37 H 0.068 0.932
38 H 0.069 0.931
39 H 0.424 0.576
40 H 0.425 0.575
41 H 0.179 0.821
42 H 0.086 0.914
43 H 0.100 0.900
44 H 0.074 0.926
45 H 0.032 0.968
46 H 0.042 0.958
47 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.238 -24.143 0.488 27.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.188 4.188
3 C 0.050 3.950
4 H 0.111 0.889
5 O -0.387 6.387
6 C -0.192 4.192
7 C -0.005 4.005
8 N -0.331 5.331
9 C 0.298 3.702
10 O -0.416 6.416
11 C 0.298 3.702
12 O -0.371 6.371
13 N -0.263 5.263
14 C 0.065 3.935
15 C -0.321 4.321
16 C -0.106 4.106
17 C -0.119 4.119
18 N -0.147 5.147
19 N -0.153 5.153
20 C 0.152 3.848
21 C -0.594 4.594
22 H 0.068 0.932
23 C -0.178 4.178
24 N -0.552 5.552
25 Si 0.795 3.205
26 H -0.198 1.198
27 H -0.196 1.196
28 H -0.194 1.194
29 H 0.070 0.930
30 H 0.078 0.922
31 H 0.069 0.931
32 H 0.095 0.905
33 H 0.101 0.899
34 H 0.237 0.763
35 H 0.111 0.889
36 H 0.117 0.883
37 H 0.087 0.913
38 H 0.087 0.913
39 H 0.263 0.737
40 H 0.263 0.737
41 H 0.196 0.804
42 H 0.105 0.895
43 H 0.119 0.881
44 H 0.093 0.907
45 H 0.050 0.950
46 H 0.060 0.940
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -13.047 -22.404 -0.108 25.926
hybrid contribution -0.302 0.239 1.023 1.093
sum -13.349 -22.164 0.915 25.890
Atomic orbital electron populations
1.21722 0.95714 1.01719 1.01822 1.22186 0.96580 0.96075 1.03914
1.21910 0.91872 0.93661 0.87553 0.88863 1.86602 1.77406 1.58092
1.16632 1.22509 0.97013 0.94147 1.05487 1.21603 0.76678 0.99546
1.02652 1.45664 1.08900 1.07979 1.70542 1.19476 0.86562 0.85402
0.78764 1.90843 1.69073 1.32290 1.49393 1.20306 0.89190 0.82974
0.77714 1.90663 1.68866 1.30693 1.46884 1.42464 1.03447 1.11543
1.68875 1.18395 0.82508 0.89587 1.02986 1.21554 0.90900 0.98948
1.20728 1.22937 0.97360 0.91418 0.98880 1.20258 0.90771 0.97103
1.03766 1.77327 0.96322 1.13534 1.27521 1.49354 1.03055 1.06475
1.56387 1.19233 0.94825 0.72779 0.97954 1.21439 1.47622 0.98165
0.92199 0.93240 1.25745 0.93669 0.96421 1.01974 1.69999 1.43950
1.09036 1.32238 0.85309 0.78464 0.78220 0.78517 1.19834 1.19642
1.19359 0.93025 0.92167 0.93126 0.90479 0.89885 0.76327 0.88934
0.88271 0.91334 0.91300 0.73705 0.73713 0.80357 0.89534 0.88133
0.90691 0.95014 0.94005 0.91631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 9.81 71.98 0.71 -0.61 16
2 C -0.15 -0.93 5.61 30.59 0.17 -0.76 16
3 C 0.11 0.97 2.97 30.59 0.09 1.07 16
4 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
5 O -0.58 -7.18 12.41 -148.98 -1.85 -9.03 16
6 C -0.15 -1.14 5.01 30.59 0.15 -0.99 16
7 C 0.12 1.81 5.57 86.38 0.48 2.29 16
8 N -0.68 -12.51 5.55 -464.54 -2.58 -15.09 16
9 C 0.52 14.44 7.88 87.22 0.69 15.12 16
10 O -0.54 -18.54 16.48 -3.30 -0.05 -18.60 16
11 C 0.52 16.43 7.85 87.22 0.68 17.11 16
12 O -0.50 -15.57 13.60 -3.37 -0.05 -15.61 16
13 N -0.62 -23.39 5.40 -309.59 -1.67 -25.06 16
14 C 0.29 12.34 7.68 131.25 1.01 13.35 16
15 C -0.29 -11.23 9.58 22.15 0.21 -11.02 16
16 C 0.06 2.28 7.20 43.06 0.31 2.59 16
17 C -0.06 -1.56 10.44 71.24 0.74 -0.82 16
18 N -0.32 -15.10 12.56 -47.49 -0.60 -15.70 16
19 N -0.37 -17.94 3.62 -348.38 -1.26 -19.20 16
20 C 0.27 14.53 6.02 85.63 0.52 15.05 16
21 C -0.56 -31.61 9.39 25.60 0.24 -31.37 16
22 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16
23 C 0.02 1.30 5.46 84.65 0.46 1.77 16
24 N -0.91 -52.30 13.29 21.45 0.28 -52.01 16
25 Si 0.97 43.97 29.54 68.60 2.03 45.99 16
26 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16
27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16
29 H 0.05 0.55 7.82 -2.39 -0.02 0.53 16
30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16
31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16
32 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16
33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16
34 H 0.39 2.20 9.04 -74.06 -0.67 1.53 16
35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16
36 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16
37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
38 H 0.07 1.30 7.82 -2.38 -0.02 1.28 16
39 H 0.42 5.91 7.94 -92.71 -0.74 5.17 16
40 H 0.42 16.75 7.46 -92.71 -0.69 16.05 16
41 H 0.18 6.23 5.83 -2.91 -0.02 6.21 16
42 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16
43 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16
44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
45 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16
46 H 0.04 2.23 7.52 -2.39 -0.02 2.21 16
47 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16
Total: -1.00 -73.04 401.49 -0.35 -73.40
By element:
Atomic # 1 Polarization: 29.20 SS G_CDS: -1.08 Total: 28.13 kcal
Atomic # 6 Polarization: 16.31 SS G_CDS: 6.47 Total: 22.78 kcal
Atomic # 7 Polarization: -121.23 SS G_CDS: -5.82 Total: -127.06 kcal
Atomic # 8 Polarization: -41.29 SS G_CDS: -1.95 Total: -43.24 kcal
Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal
Total: -73.04 -0.35 -73.40 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001324218396.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.710 kcal
(2) G-P(sol) polarization free energy of solvation -73.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds