Wall clock time and date at job start Tue Mar 31 2020 21:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 H 1.09005 * 109.47207 * 55.00518 * 3 2 1 5 5 O 1.42894 * 109.47605 * 295.00066 * 3 2 1 6 6 C 1.53005 * 109.46889 * 174.99844 * 3 2 1 7 7 C 1.52992 * 109.47277 * 185.00136 * 6 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 6 3 9 9 C 1.34784 * 119.99971 * 180.02562 * 8 7 6 10 10 O 1.21364 * 119.99702 * 359.72795 * 9 8 7 11 11 C 1.49301 * 119.99790 * 179.97438 * 9 8 7 12 12 O 1.21395 * 120.00116 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99785 * 180.02562 * 11 9 8 14 14 C 1.39198 * 119.99782 * 180.02562 * 13 11 9 15 15 C 1.36214 * 126.27327 * 359.69092 * 14 13 11 16 16 C 1.39698 * 107.85802 * 179.90642 * 15 14 13 17 17 C 1.50699 * 125.76990 * 180.14327 * 16 15 14 18 18 N 1.30848 * 108.46025 * 0.36053 * 16 15 14 19 19 N 1.35856 * 126.27137 * 179.97438 * 14 13 11 20 20 C 1.46503 * 126.09889 * 359.96781 * 19 14 13 21 21 C 1.50695 * 109.47450 * 89.99658 * 20 19 14 22 22 H 1.08001 * 119.99937 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00327 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99505 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00431 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46937 * 89.99693 * 25 23 21 27 27 H 1.48498 * 109.47245 * 209.99573 * 25 23 21 28 28 H 1.48503 * 109.46897 * 329.99826 * 25 23 21 29 29 H 1.08999 * 109.47374 * 300.00202 * 1 2 3 30 30 H 1.09006 * 109.46914 * 59.99491 * 1 2 3 31 31 H 1.08995 * 109.47454 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46882 * 240.00359 * 2 1 3 33 33 H 1.08992 * 109.46740 * 120.00531 * 2 1 3 34 34 H 0.96702 * 114.00192 * 300.00132 * 5 3 2 35 35 H 1.09004 * 109.46840 * 64.99959 * 6 3 2 36 36 H 1.09005 * 109.47310 * 305.00349 * 6 3 2 37 37 H 1.09004 * 109.47330 * 60.00123 * 7 6 3 38 38 H 1.09005 * 109.47124 * 300.00327 * 7 6 3 39 39 H 0.96999 * 119.99984 * 359.97438 * 8 7 6 40 40 H 0.96999 * 120.00050 * 0.02562 * 13 11 9 41 41 H 1.08001 * 126.07183 * 0.03749 * 15 14 13 42 42 H 1.09002 * 109.47502 * 270.23035 * 17 16 15 43 43 H 1.08998 * 109.47476 * 30.23078 * 17 16 15 44 44 H 1.08998 * 109.47294 * 150.22917 * 17 16 15 45 45 H 1.09002 * 109.46892 * 210.00131 * 20 19 14 46 46 H 1.09003 * 109.46955 * 329.99500 * 20 19 14 47 47 H 0.97007 * 119.99600 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0815 -1.2209 6 6 3.5649 1.4443 0.1258 7 6 4.0646 2.8848 0.2512 8 7 5.5247 2.8866 0.3710 9 6 6.1893 4.0526 0.4944 10 8 5.5786 5.1014 0.5013 11 6 7.6773 4.0543 0.6171 12 8 8.2885 3.0056 0.6052 13 7 8.3419 5.2203 0.7410 14 6 9.7292 5.2219 0.8548 15 6 10.5385 4.1263 0.8619 16 6 11.8572 4.5686 0.9917 17 6 13.0804 3.6896 1.0406 18 7 11.8504 5.8748 1.0684 19 7 10.5237 6.3162 0.9846 20 6 10.0732 7.7096 1.0293 21 6 9.8021 8.1043 2.4582 22 1 9.9509 7.3890 3.2535 23 6 9.3641 9.3786 2.7501 24 7 9.1834 10.2498 1.7816 25 14 9.0274 9.8677 4.5212 26 1 10.2653 10.4225 5.1255 27 1 7.9561 10.8955 4.5558 28 1 8.5932 8.6739 5.2904 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0142 1.6543 -2.0139 35 1 4.0030 0.9835 -0.7596 36 1 3.8571 0.8799 1.0114 37 1 3.6265 3.3456 1.1366 38 1 3.7724 3.4492 -0.6344 39 1 6.0130 2.0485 0.3623 40 1 7.8535 6.0583 0.7508 41 1 10.2178 3.0983 0.7794 42 1 13.2912 3.4176 2.0749 43 1 12.9026 2.7867 0.4565 44 1 13.9320 4.2288 0.6259 45 1 10.8474 8.3552 0.6146 46 1 9.1600 7.8151 0.4437 47 1 8.8749 11.1462 1.9870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324218398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:36 Heat of formation + Delta-G solvation = -57.787954 kcal Electronic energy + Delta-G solvation = -28650.410616 eV Core-core repulsion = 24448.713618 eV Total energy + Delta-G solvation = -4201.696997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.16536 -40.17127 -38.84929 -38.26693 -35.70127 -34.68644 -33.77998 -33.30958 -32.07849 -31.26768 -29.27913 -28.53944 -26.73128 -26.05247 -24.57408 -22.88074 -22.33322 -21.94609 -21.00333 -19.94638 -19.56161 -17.99093 -16.98184 -16.90521 -16.74413 -16.53067 -16.22672 -16.00727 -15.76607 -15.01895 -14.86895 -14.66430 -14.30768 -14.26652 -14.00334 -13.75725 -13.28002 -13.02153 -12.96525 -12.78678 -12.55986 -12.47858 -12.08846 -12.06214 -11.87822 -11.73799 -11.67606 -11.48278 -11.45594 -11.21992 -11.06642 -10.86336 -10.54167 -10.44225 -10.31537 -9.85151 -9.80493 -9.52665 -9.45306 -8.68734 -7.97730 -7.56957 -6.30263 -4.38875 1.23415 2.09358 2.62249 3.19333 3.20744 3.24470 3.26914 3.32183 3.55336 3.76735 3.89768 4.16756 4.27023 4.32201 4.43958 4.55191 4.67175 4.72688 4.99227 5.03213 5.12711 5.25851 5.29107 5.29318 5.47904 5.50223 5.53458 5.62457 5.75052 5.80734 5.98411 5.99340 6.04490 6.07660 6.14225 6.28732 6.51434 6.82179 6.93168 7.02136 7.20147 7.37806 7.46690 7.53936 7.64731 7.81007 7.82976 8.08005 8.56204 8.69485 9.28699 10.77176 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.002457 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.207227 B =11390.990349 C =13384.678898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.103 0.897 5 O -0.558 6.558 6 C -0.166 4.166 7 C 0.120 3.880 8 N -0.703 5.703 9 C 0.514 3.486 10 O -0.506 6.506 11 C 0.512 3.488 12 O -0.499 6.499 13 N -0.607 5.607 14 C 0.293 3.707 15 C -0.287 4.287 16 C 0.049 3.951 17 C -0.062 4.062 18 N -0.277 5.277 19 N -0.340 5.340 20 C 0.255 3.745 21 C -0.542 4.542 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.888 5.888 25 Si 0.907 3.093 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.375 0.625 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.412 0.588 40 H 0.429 0.571 41 H 0.163 0.837 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.046 0.954 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.525 -21.280 -5.248 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.121 0.879 5 O -0.363 6.363 6 C -0.204 4.204 7 C -0.003 4.003 8 N -0.358 5.358 9 C 0.294 3.706 10 O -0.380 6.380 11 C 0.293 3.707 12 O -0.373 6.373 13 N -0.254 5.254 14 C 0.071 3.929 15 C -0.319 4.319 16 C -0.116 4.116 17 C -0.121 4.121 18 N -0.103 5.103 19 N -0.126 5.126 20 C 0.137 3.863 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.734 3.266 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.222 0.778 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.249 0.751 40 H 0.268 0.732 41 H 0.180 0.820 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.064 0.936 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.317 -19.452 -4.769 23.513 hybrid contribution -0.495 -0.513 0.606 0.936 sum -12.813 -19.965 -4.162 24.085 Atomic orbital electron populations 1.21712 0.94960 1.01543 1.02567 1.22235 0.97315 0.96879 1.02915 1.21908 0.91854 0.93101 0.88204 0.87908 1.86631 1.76921 1.57178 1.15591 1.22569 0.97355 0.96571 1.03931 1.21438 0.78221 0.97129 1.03494 1.45685 1.08111 1.08863 1.73093 1.19797 0.87724 0.84690 0.78384 1.90845 1.69009 1.30945 1.47166 1.19906 0.88289 0.83771 0.78747 1.90692 1.68481 1.30926 1.47222 1.42305 1.04283 1.10826 1.68030 1.17977 0.81387 0.89892 1.03641 1.21273 0.90939 0.98678 1.21025 1.22020 0.95531 0.92104 1.01902 1.20027 0.92926 0.96947 1.02196 1.77366 0.96435 1.11677 1.24795 1.49595 1.02191 1.06936 1.53902 1.19702 0.96086 0.71582 0.98928 1.21305 1.46827 0.98229 0.91692 0.91688 1.24938 0.94607 0.95773 0.98358 1.69917 1.44982 1.05640 1.32023 0.86333 0.78182 0.78445 0.83615 1.20226 1.20788 1.19682 0.92630 0.91989 0.92817 0.91531 0.90903 0.77821 0.90526 0.89913 0.90767 0.90037 0.75140 0.73234 0.82016 0.91247 0.91104 0.91465 0.92334 0.93580 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.81 37.16 0.36 -0.38 16 2 C -0.16 -0.66 5.61 -26.73 -0.15 -0.81 16 3 C 0.11 0.58 2.97 -26.73 -0.08 0.50 16 4 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 5 O -0.56 -3.69 12.41 -35.23 -0.44 -4.13 16 6 C -0.17 -0.84 5.01 -26.73 -0.13 -0.97 16 7 C 0.12 1.01 5.57 -4.05 -0.02 0.99 16 8 N -0.70 -7.12 5.55 -60.78 -0.34 -7.46 16 9 C 0.51 7.32 7.88 -11.65 -0.09 7.23 16 10 O -0.51 -8.62 16.47 5.48 0.09 -8.53 16 11 C 0.51 8.30 7.85 -11.66 -0.09 8.21 16 12 O -0.50 -8.24 13.60 5.46 0.07 -8.17 16 13 N -0.61 -11.34 5.40 -11.80 -0.06 -11.40 16 14 C 0.29 6.23 7.68 -152.85 -1.17 5.06 16 15 C -0.29 -5.71 9.58 -39.76 -0.38 -6.09 16 16 C 0.05 0.97 7.20 -82.47 -0.59 0.37 16 17 C -0.06 -0.89 10.44 36.00 0.38 -0.51 16 18 N -0.28 -6.40 12.56 33.64 0.42 -5.97 16 19 N -0.34 -8.06 3.62 -61.47 -0.22 -8.28 16 20 C 0.25 6.51 6.02 -5.19 -0.03 6.48 16 21 C -0.54 -14.92 9.39 -34.44 -0.32 -15.24 16 22 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 24 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 25 Si 0.91 21.29 29.54 -169.99 -5.02 16.27 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 7.82 -51.93 -0.41 -0.06 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.37 1.26 9.05 45.56 0.41 1.67 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.78 7.82 -51.93 -0.41 0.38 16 39 H 0.41 3.44 7.94 -40.82 -0.32 3.12 16 40 H 0.43 8.11 7.46 -40.82 -0.30 7.80 16 41 H 0.16 3.00 5.83 -52.49 -0.31 2.70 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.05 1.16 7.52 -51.93 -0.39 0.77 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -33.11 401.50 -7.48 -40.59 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.34 Total: 8.69 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -2.43 Total: 6.57 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.54 Total: -57.34 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.27 Total: -20.83 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.11 -7.48 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324218398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.201 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds