Wall clock time and date at job start Tue Mar 31 2020 21:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 H 1.09005 * 109.47207 * 55.00518 * 3 2 1 5 5 O 1.42894 * 109.47605 * 295.00066 * 3 2 1 6 6 C 1.53005 * 109.46889 * 174.99844 * 3 2 1 7 7 C 1.52992 * 109.47277 * 185.00136 * 6 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 6 3 9 9 C 1.34784 * 119.99971 * 180.02562 * 8 7 6 10 10 O 1.21364 * 119.99702 * 359.72795 * 9 8 7 11 11 C 1.49301 * 119.99790 * 179.97438 * 9 8 7 12 12 O 1.21395 * 120.00116 * 0.02562 * 11 9 8 13 13 N 1.34774 * 119.99785 * 180.02562 * 11 9 8 14 14 C 1.39198 * 119.99782 * 180.02562 * 13 11 9 15 15 C 1.36214 * 126.27327 * 359.69092 * 14 13 11 16 16 C 1.39698 * 107.85802 * 179.90642 * 15 14 13 17 17 C 1.50699 * 125.76990 * 180.14327 * 16 15 14 18 18 N 1.30848 * 108.46025 * 0.36053 * 16 15 14 19 19 N 1.35856 * 126.27137 * 179.97438 * 14 13 11 20 20 C 1.46503 * 126.09889 * 359.96781 * 19 14 13 21 21 C 1.50695 * 109.47450 * 89.99658 * 20 19 14 22 22 H 1.08001 * 119.99937 * 0.02562 * 21 20 19 23 23 C 1.37873 * 120.00327 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99505 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00431 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46937 * 89.99693 * 25 23 21 27 27 H 1.48498 * 109.47245 * 209.99573 * 25 23 21 28 28 H 1.48503 * 109.46897 * 329.99826 * 25 23 21 29 29 H 1.08999 * 109.47374 * 300.00202 * 1 2 3 30 30 H 1.09006 * 109.46914 * 59.99491 * 1 2 3 31 31 H 1.08995 * 109.47454 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46882 * 240.00359 * 2 1 3 33 33 H 1.08992 * 109.46740 * 120.00531 * 2 1 3 34 34 H 0.96702 * 114.00192 * 300.00132 * 5 3 2 35 35 H 1.09004 * 109.46840 * 64.99959 * 6 3 2 36 36 H 1.09005 * 109.47310 * 305.00349 * 6 3 2 37 37 H 1.09004 * 109.47330 * 60.00123 * 7 6 3 38 38 H 1.09005 * 109.47124 * 300.00327 * 7 6 3 39 39 H 0.96999 * 119.99984 * 359.97438 * 8 7 6 40 40 H 0.96999 * 120.00050 * 0.02562 * 13 11 9 41 41 H 1.08001 * 126.07183 * 0.03749 * 15 14 13 42 42 H 1.09002 * 109.47502 * 270.23035 * 17 16 15 43 43 H 1.08998 * 109.47476 * 30.23078 * 17 16 15 44 44 H 1.08998 * 109.47294 * 150.22917 * 17 16 15 45 45 H 1.09002 * 109.46892 * 210.00131 * 20 19 14 46 46 H 1.09003 * 109.46955 * 329.99500 * 20 19 14 47 47 H 0.97007 * 119.99600 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0815 -1.2209 6 6 3.5649 1.4443 0.1258 7 6 4.0646 2.8848 0.2512 8 7 5.5247 2.8866 0.3710 9 6 6.1893 4.0526 0.4944 10 8 5.5786 5.1014 0.5013 11 6 7.6773 4.0543 0.6171 12 8 8.2885 3.0056 0.6052 13 7 8.3419 5.2203 0.7410 14 6 9.7292 5.2219 0.8548 15 6 10.5385 4.1263 0.8619 16 6 11.8572 4.5686 0.9917 17 6 13.0804 3.6896 1.0406 18 7 11.8504 5.8748 1.0684 19 7 10.5237 6.3162 0.9846 20 6 10.0732 7.7096 1.0293 21 6 9.8021 8.1043 2.4582 22 1 9.9509 7.3890 3.2535 23 6 9.3641 9.3786 2.7501 24 7 9.1834 10.2498 1.7816 25 14 9.0274 9.8677 4.5212 26 1 10.2653 10.4225 5.1255 27 1 7.9561 10.8955 4.5558 28 1 8.5932 8.6739 5.2904 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.0142 1.6543 -2.0139 35 1 4.0030 0.9835 -0.7596 36 1 3.8571 0.8799 1.0114 37 1 3.6265 3.3456 1.1366 38 1 3.7724 3.4492 -0.6344 39 1 6.0130 2.0485 0.3623 40 1 7.8535 6.0583 0.7508 41 1 10.2178 3.0983 0.7794 42 1 13.2912 3.4176 2.0749 43 1 12.9026 2.7867 0.4565 44 1 13.9320 4.2288 0.6259 45 1 10.8474 8.3552 0.6146 46 1 9.1600 7.8151 0.4437 47 1 8.8749 11.1462 1.9870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324218398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:35 Heat of formation + Delta-G solvation = -83.055765 kcal Electronic energy + Delta-G solvation = -28651.506310 eV Core-core repulsion = 24448.713618 eV Total energy + Delta-G solvation = -4202.792692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63692 -41.52454 -39.84173 -39.06245 -36.82676 -36.06297 -35.58892 -33.86794 -33.73139 -31.93723 -30.87622 -30.09842 -27.84297 -27.55169 -25.62429 -24.70310 -23.06503 -22.52213 -22.11652 -21.43444 -20.91913 -19.33058 -18.88801 -18.24271 -17.88474 -17.51430 -17.15007 -16.84154 -16.80584 -16.56295 -16.15310 -15.95300 -15.54668 -15.39827 -15.03516 -14.65978 -14.60828 -14.45246 -14.07716 -13.95659 -13.60550 -13.52450 -13.44736 -13.13990 -12.99664 -12.90887 -12.81260 -12.71575 -12.54671 -12.32201 -12.26933 -12.07918 -11.79704 -11.74267 -11.63496 -11.42747 -11.00845 -10.78818 -10.71553 -10.39021 -9.69478 -9.19055 -8.39072 -6.56680 -0.06172 0.80636 1.08658 1.34908 1.35222 1.46426 1.78780 1.81635 2.10188 2.29098 2.41718 2.91595 3.15185 3.49116 3.74696 3.78750 3.94281 4.08953 4.13320 4.27707 4.28109 4.48980 4.54990 4.64705 4.66206 4.68750 4.74129 4.81310 4.90145 4.92784 4.93639 4.98758 5.03475 5.13822 5.15668 5.16789 5.20537 5.37277 5.43958 5.47596 5.73134 5.77845 5.92946 5.96554 6.17205 6.45227 6.58432 6.74885 6.91743 6.95003 7.15117 8.67776 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.002457 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.207227 B =11390.990349 C =13384.678898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.150 4.150 3 C 0.110 3.890 4 H 0.092 0.908 5 O -0.579 6.579 6 C -0.154 4.154 7 C 0.117 3.883 8 N -0.677 5.677 9 C 0.519 3.481 10 O -0.539 6.539 11 C 0.516 3.484 12 O -0.498 6.498 13 N -0.616 5.616 14 C 0.287 3.713 15 C -0.290 4.290 16 C 0.059 3.941 17 C -0.061 4.061 18 N -0.322 5.322 19 N -0.367 5.367 20 C 0.271 3.729 21 C -0.557 4.557 22 H 0.050 0.950 23 C 0.024 3.976 24 N -0.914 5.914 25 Si 0.971 3.029 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.388 0.612 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.424 0.576 40 H 0.425 0.575 41 H 0.179 0.821 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.032 0.968 46 H 0.042 0.958 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 -23.907 -4.703 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.188 4.188 3 C 0.050 3.950 4 H 0.110 0.890 5 O -0.387 6.387 6 C -0.192 4.192 7 C -0.005 4.005 8 N -0.331 5.331 9 C 0.298 3.702 10 O -0.416 6.416 11 C 0.298 3.702 12 O -0.371 6.371 13 N -0.263 5.263 14 C 0.065 3.935 15 C -0.321 4.321 16 C -0.106 4.106 17 C -0.119 4.119 18 N -0.147 5.147 19 N -0.153 5.153 20 C 0.152 3.848 21 C -0.595 4.595 22 H 0.068 0.932 23 C -0.178 4.178 24 N -0.552 5.552 25 Si 0.795 3.205 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.237 0.763 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.263 0.737 40 H 0.263 0.737 41 H 0.196 0.804 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.670 -22.158 -4.246 25.876 hybrid contribution -0.413 0.157 0.370 0.576 sum -13.083 -22.001 -3.876 25.889 Atomic orbital electron populations 1.21723 0.95720 1.01719 1.01820 1.22186 0.96577 0.96076 1.03914 1.21898 0.91867 0.93648 0.87562 0.88976 1.86602 1.77404 1.58058 1.16603 1.22510 0.97015 0.94142 1.05488 1.21601 0.76677 0.99559 1.02643 1.45663 1.08901 1.07986 1.70537 1.19477 0.86568 0.85413 0.78750 1.90842 1.69085 1.32293 1.49372 1.20306 0.89179 0.82971 0.77732 1.90664 1.68855 1.30661 1.46928 1.42464 1.03459 1.11571 1.68834 1.18396 0.82472 0.89633 1.02974 1.21554 0.90901 0.98838 1.20832 1.22937 0.97378 0.91460 0.98812 1.20255 0.90686 0.97001 1.03956 1.77327 0.96447 1.13672 1.27250 1.49357 1.03090 1.06587 1.56242 1.19228 0.94852 0.72871 0.97819 1.21408 1.47463 0.98444 0.92167 0.93216 1.25747 0.94077 0.95544 1.02441 1.69998 1.45236 1.06058 1.33920 0.85359 0.78378 0.78194 0.78602 1.19658 1.19527 1.19588 0.93192 0.92965 0.92166 0.90389 0.89973 0.76296 0.88785 0.88414 0.91558 0.91084 0.73706 0.73714 0.80360 0.89526 0.88138 0.90694 0.95035 0.94019 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.81 71.98 0.71 -0.62 16 2 C -0.15 -0.93 5.61 30.60 0.17 -0.76 16 3 C 0.11 0.98 2.97 30.60 0.09 1.07 16 4 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 5 O -0.58 -6.98 12.41 -148.98 -1.85 -8.83 16 6 C -0.15 -1.14 5.01 30.59 0.15 -0.99 16 7 C 0.12 1.81 5.57 86.38 0.48 2.29 16 8 N -0.68 -12.53 5.55 -464.56 -2.58 -15.11 16 9 C 0.52 14.45 7.88 87.22 0.69 15.14 16 10 O -0.54 -18.55 16.47 -3.29 -0.05 -18.61 16 11 C 0.52 16.44 7.85 87.22 0.68 17.13 16 12 O -0.50 -15.58 13.60 -3.39 -0.05 -15.62 16 13 N -0.62 -23.41 5.40 -309.59 -1.67 -25.08 16 14 C 0.29 12.34 7.68 131.25 1.01 13.35 16 15 C -0.29 -11.22 9.58 22.15 0.21 -11.01 16 16 C 0.06 2.28 7.20 43.06 0.31 2.59 16 17 C -0.06 -1.56 10.44 71.24 0.74 -0.82 16 18 N -0.32 -15.09 12.56 -47.49 -0.60 -15.69 16 19 N -0.37 -17.93 3.62 -348.38 -1.26 -19.19 16 20 C 0.27 14.54 6.02 85.63 0.52 15.06 16 21 C -0.56 -31.60 9.39 25.60 0.24 -31.36 16 22 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 23 C 0.02 1.31 5.46 84.65 0.46 1.77 16 24 N -0.91 -52.31 13.29 21.45 0.28 -52.03 16 25 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.55 7.82 -2.38 -0.02 0.53 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.39 1.99 9.05 -74.06 -0.67 1.32 16 35 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 1.30 7.82 -2.38 -0.02 1.28 16 39 H 0.42 5.92 7.94 -92.71 -0.74 5.18 16 40 H 0.42 16.76 7.46 -92.71 -0.69 16.07 16 41 H 0.18 6.23 5.83 -2.91 -0.02 6.21 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.04 2.23 7.52 -2.39 -0.02 2.21 16 47 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -72.91 401.50 -0.36 -73.27 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -1.08 Total: 28.14 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 6.47 Total: 22.83 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -5.82 Total: -127.09 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.95 Total: -43.06 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.91 -0.36 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324218398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.788 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds