Wall clock time and date at job start Tue Mar 31 2020 21:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47231 * 2 1 4 4 C 1.52996 * 109.47028 * 240.00072 * 2 1 3 5 5 C 1.53004 * 109.47463 * 59.99883 * 4 2 1 6 6 C 1.52997 * 109.47091 * 180.02562 * 5 4 2 7 7 O 1.42907 * 109.46782 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47250 * 120.00050 * 2 1 3 9 9 N 1.46505 * 109.47069 * 299.99860 * 8 2 1 10 10 C 1.34772 * 119.99990 * 179.97438 * 9 8 2 11 11 O 1.21359 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.49308 * 119.99928 * 179.97438 * 10 9 8 13 13 O 1.21403 * 119.99901 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00276 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00387 * 180.02562 * 14 12 10 16 16 C 1.40721 * 126.09820 * 359.95366 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.79326 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10217 * 180.02562 * 15 14 12 28 28 H 1.09008 * 109.47419 * 300.00197 * 1 2 3 29 29 H 1.09005 * 109.47513 * 59.99734 * 1 2 3 30 30 H 1.09000 * 109.47810 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47113 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46696 * 299.99916 * 3 2 1 33 33 H 1.08998 * 109.47084 * 59.99541 * 3 2 1 34 34 H 1.08998 * 109.47176 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47119 * 299.99695 * 4 2 1 36 36 H 1.08998 * 109.47064 * 300.00239 * 5 4 2 37 37 H 1.08996 * 109.46701 * 59.99987 * 5 4 2 38 38 H 1.08998 * 109.47343 * 300.00045 * 6 5 4 39 39 H 1.09003 * 109.47208 * 60.00682 * 6 5 4 40 40 H 0.96701 * 113.99779 * 179.97438 * 7 6 5 41 41 H 1.08998 * 109.47220 * 179.97438 * 8 2 1 42 42 H 1.08992 * 109.47177 * 59.99454 * 8 2 1 43 43 H 0.96997 * 119.99535 * 0.02562 * 9 8 2 44 44 H 0.97001 * 119.99593 * 0.02562 * 14 12 10 45 45 H 1.08006 * 125.81655 * 0.02562 * 16 15 14 46 46 H 0.96999 * 120.00193 * 180.02562 * 22 21 19 47 47 H 1.07997 * 126.25020 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5299 0.0000 -2.4985 6 6 2.0394 -0.7217 -3.7477 7 8 1.5625 -0.0484 -4.9145 8 6 2.0400 -0.7213 1.2492 9 7 1.5517 -0.0306 2.4454 10 6 1.8769 -0.4914 3.6695 11 8 2.5746 -1.4781 3.7809 12 6 1.3797 0.2129 4.8886 13 8 0.6821 1.2002 4.7772 14 7 1.7052 -0.2476 6.1127 15 6 1.2377 0.4138 7.2582 16 6 0.4261 1.5632 7.2787 17 7 0.1944 1.8825 8.5266 18 7 0.8527 0.9598 9.3494 19 6 0.8535 0.9581 10.7223 20 1 1.3112 0.1416 11.2611 21 6 0.2601 2.0044 11.4190 22 7 -0.3959 2.9373 10.7689 23 14 0.3962 2.0830 13.2804 24 1 1.5413 2.9503 13.6569 25 1 -0.8570 2.6449 13.8451 26 1 0.6125 0.7161 13.8191 27 6 1.4886 0.0598 8.5449 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1299 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.4399 0.0000 -2.4985 37 1 1.8933 1.0276 -2.4985 38 1 3.1294 -0.7221 -3.7479 39 1 1.6756 -1.7492 -3.7475 40 1 1.8478 -0.4519 -5.7457 41 1 3.1300 -0.7216 1.2490 42 1 1.6766 -1.7488 1.2493 43 1 0.9937 0.7578 2.3564 44 1 2.2629 -1.0362 6.2017 45 1 0.0542 2.0898 6.4122 46 1 -0.8096 3.6677 11.2550 47 1 2.0829 -0.7806 8.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324835817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:43 Heat of formation + Delta-G solvation = -51.961565 kcal Electronic energy + Delta-G solvation = -28423.074720 eV Core-core repulsion = 24221.630374 eV Total energy + Delta-G solvation = -4201.444346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59153 -39.67506 -38.83149 -37.82346 -37.12096 -34.78874 -33.95255 -33.14970 -31.54166 -30.32961 -28.18641 -27.63936 -27.36574 -26.25879 -25.11510 -23.55929 -21.90997 -21.02367 -20.35120 -19.52378 -19.24059 -18.15239 -17.63799 -17.44407 -16.37578 -16.18363 -15.83472 -15.60162 -15.40952 -15.12103 -14.93304 -14.84344 -14.13983 -14.03367 -13.81556 -13.60406 -13.50525 -13.39878 -13.03716 -12.98962 -12.51248 -12.33559 -12.10516 -11.75216 -11.65559 -11.57636 -11.49840 -11.32015 -11.22535 -11.08449 -10.96660 -10.85613 -10.84532 -10.55126 -10.38804 -10.28780 -9.27914 -9.23506 -9.13077 -8.87891 -8.13215 -6.78431 -6.61409 -4.28434 1.66122 2.60202 2.93006 3.03704 3.08839 3.32983 3.66683 3.71490 3.77572 4.00621 4.28814 4.34601 4.36994 4.44613 4.60020 4.61102 4.79715 4.91183 4.96708 5.02298 5.08432 5.09397 5.18301 5.35278 5.35679 5.39803 5.44033 5.62266 5.66251 5.70191 5.74419 5.81068 6.03933 6.04075 6.18815 6.20089 6.35857 6.75306 6.88848 6.91428 7.15361 7.15784 7.21877 7.76053 7.85696 8.10104 8.18038 8.48387 8.69046 9.30947 9.59318 10.34672 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042761 B = 0.001661 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.638944 B =16856.400820 C =17299.638329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.124 4.124 6 C 0.074 3.926 7 O -0.577 6.577 8 C 0.128 3.872 9 N -0.702 5.702 10 C 0.514 3.486 11 O -0.530 6.530 12 C 0.483 3.517 13 O -0.524 6.524 14 N -0.583 5.583 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.138 5.138 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.379 0.621 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.413 0.587 44 H 0.409 0.591 45 H 0.178 0.822 46 H 0.276 0.724 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 -7.284 -23.645 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.161 4.161 6 C -0.004 4.004 7 O -0.382 6.382 8 C 0.005 3.995 9 N -0.357 5.357 10 C 0.295 3.705 11 O -0.406 6.406 12 C 0.264 3.736 13 O -0.401 6.401 14 N -0.226 5.226 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.226 0.774 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.251 0.749 44 H 0.244 0.756 45 H 0.194 0.806 46 H 0.086 0.914 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.118 -5.878 -22.356 23.479 hybrid contribution 0.858 -1.093 -0.165 1.400 sum 4.976 -6.971 -22.520 24.094 Atomic orbital electron populations 1.21996 0.93711 1.02457 1.02518 1.20777 0.96615 0.96281 0.93832 1.21995 1.01399 0.94767 1.02517 1.21457 1.01000 0.99250 0.92457 1.21635 1.02131 1.00407 0.91923 1.22226 0.97388 0.95121 0.85646 1.86483 1.77677 1.57707 1.16345 1.21478 0.99409 0.96073 0.82556 1.45764 1.52940 1.32313 1.04656 1.20279 0.80820 0.84457 0.84913 1.90728 1.37105 1.25748 1.86997 1.19665 0.83840 0.85979 0.84120 1.90652 1.37766 1.25767 1.85953 1.42144 1.48114 1.29010 1.03310 1.17264 1.13848 1.02108 0.84382 1.24141 1.02380 0.97121 0.96531 1.78255 1.18762 1.13671 0.98509 1.44560 1.26083 1.14709 1.05167 1.19937 1.39473 1.09384 0.76744 0.86419 1.25665 0.94935 0.94996 1.01461 1.70208 1.23604 1.08884 1.36639 0.85791 0.78484 0.79404 0.80372 1.19580 1.20052 1.18711 1.21310 1.10370 1.01975 0.89134 0.92121 0.91723 0.92221 0.92221 0.91730 0.92113 0.91287 0.91291 0.90709 0.90706 0.93711 0.93718 0.77433 0.90968 0.90975 0.74918 0.75595 0.80564 0.91359 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 7.95 37.15 0.30 -0.77 16 2 C -0.07 -0.51 0.56 -154.51 -0.09 -0.60 16 3 C -0.15 -1.06 7.95 37.16 0.30 -0.77 16 4 C -0.10 -0.58 4.27 -26.73 -0.11 -0.69 16 5 C -0.12 -0.75 4.88 -26.73 -0.13 -0.88 16 6 C 0.07 0.41 7.05 37.16 0.26 0.67 16 7 O -0.58 -3.95 13.66 -35.23 -0.48 -4.44 16 8 C 0.13 1.16 4.56 -4.04 -0.02 1.14 16 9 N -0.70 -8.17 4.95 -60.78 -0.30 -8.47 16 10 C 0.51 7.75 7.88 -11.65 -0.09 7.66 16 11 O -0.53 -8.72 16.47 5.49 0.09 -8.63 16 12 C 0.48 8.75 7.85 -11.65 -0.09 8.65 16 13 O -0.52 -10.56 13.62 5.45 0.07 -10.48 16 14 N -0.58 -11.05 5.45 -10.46 -0.06 -11.11 16 15 C -0.07 -1.63 6.90 -83.93 -0.58 -2.20 16 16 C -0.03 -0.67 10.84 -17.02 -0.18 -0.86 16 17 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.46 10.24 -14.82 -0.15 -8.61 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.14 11.83 55.50 0.66 -20.48 16 23 Si 0.94 18.69 29.56 -169.99 -5.02 13.66 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 28 H 0.06 0.48 6.86 -51.92 -0.36 0.13 16 29 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 33 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 37 H 0.07 0.50 6.43 -51.93 -0.33 0.16 16 38 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.38 0.91 9.12 45.56 0.42 1.32 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.41 4.58 5.63 -40.82 -0.23 4.35 16 44 H 0.41 6.69 8.29 -40.82 -0.34 6.35 16 45 H 0.18 4.43 5.92 -52.48 -0.31 4.12 16 46 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -33.90 386.67 -5.68 -39.58 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.86 Total: 13.65 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.88 Total: 1.88 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.58 Total: -51.05 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.32 Total: -23.55 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.90 -5.68 -39.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324835817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.382 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds