Wall clock time and date at job start Tue Mar 31 2020 21:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47231 * 2 1 4 4 C 1.52996 * 109.47028 * 240.00072 * 2 1 3 5 5 C 1.53004 * 109.47463 * 59.99883 * 4 2 1 6 6 C 1.52997 * 109.47091 * 180.02562 * 5 4 2 7 7 O 1.42907 * 109.46782 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47250 * 120.00050 * 2 1 3 9 9 N 1.46505 * 109.47069 * 299.99860 * 8 2 1 10 10 C 1.34772 * 119.99990 * 179.97438 * 9 8 2 11 11 O 1.21359 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.49308 * 119.99928 * 179.97438 * 10 9 8 13 13 O 1.21403 * 119.99901 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00276 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00387 * 180.02562 * 14 12 10 16 16 C 1.40721 * 126.09820 * 359.95366 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.79326 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10217 * 180.02562 * 15 14 12 28 28 H 1.09008 * 109.47419 * 300.00197 * 1 2 3 29 29 H 1.09005 * 109.47513 * 59.99734 * 1 2 3 30 30 H 1.09000 * 109.47810 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47113 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46696 * 299.99916 * 3 2 1 33 33 H 1.08998 * 109.47084 * 59.99541 * 3 2 1 34 34 H 1.08998 * 109.47176 * 180.02562 * 4 2 1 35 35 H 1.09001 * 109.47119 * 299.99695 * 4 2 1 36 36 H 1.08998 * 109.47064 * 300.00239 * 5 4 2 37 37 H 1.08996 * 109.46701 * 59.99987 * 5 4 2 38 38 H 1.08998 * 109.47343 * 300.00045 * 6 5 4 39 39 H 1.09003 * 109.47208 * 60.00682 * 6 5 4 40 40 H 0.96701 * 113.99779 * 179.97438 * 7 6 5 41 41 H 1.08998 * 109.47220 * 179.97438 * 8 2 1 42 42 H 1.08992 * 109.47177 * 59.99454 * 8 2 1 43 43 H 0.96997 * 119.99535 * 0.02562 * 9 8 2 44 44 H 0.97001 * 119.99593 * 0.02562 * 14 12 10 45 45 H 1.08006 * 125.81655 * 0.02562 * 16 15 14 46 46 H 0.96999 * 120.00193 * 180.02562 * 22 21 19 47 47 H 1.07997 * 126.25020 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5299 0.0000 -2.4985 6 6 2.0394 -0.7217 -3.7477 7 8 1.5625 -0.0484 -4.9145 8 6 2.0400 -0.7213 1.2492 9 7 1.5517 -0.0306 2.4454 10 6 1.8769 -0.4914 3.6695 11 8 2.5746 -1.4781 3.7809 12 6 1.3797 0.2129 4.8886 13 8 0.6821 1.2002 4.7772 14 7 1.7052 -0.2476 6.1127 15 6 1.2377 0.4138 7.2582 16 6 0.4261 1.5632 7.2787 17 7 0.1944 1.8825 8.5266 18 7 0.8527 0.9598 9.3494 19 6 0.8535 0.9581 10.7223 20 1 1.3112 0.1416 11.2611 21 6 0.2601 2.0044 11.4190 22 7 -0.3959 2.9373 10.7689 23 14 0.3962 2.0830 13.2804 24 1 1.5413 2.9503 13.6569 25 1 -0.8570 2.6449 13.8451 26 1 0.6125 0.7161 13.8191 27 6 1.4886 0.0598 8.5449 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1299 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.4399 0.0000 -2.4985 37 1 1.8933 1.0276 -2.4985 38 1 3.1294 -0.7221 -3.7479 39 1 1.6756 -1.7492 -3.7475 40 1 1.8478 -0.4519 -5.7457 41 1 3.1300 -0.7216 1.2490 42 1 1.6766 -1.7488 1.2493 43 1 0.9937 0.7578 2.3564 44 1 2.2629 -1.0362 6.2017 45 1 0.0542 2.0898 6.4122 46 1 -0.8096 3.6677 11.2550 47 1 2.0829 -0.7806 8.8717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324835817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:42 Heat of formation + Delta-G solvation = -78.456647 kcal Electronic energy + Delta-G solvation = -28424.223633 eV Core-core repulsion = 24221.630374 eV Total energy + Delta-G solvation = -4202.593259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04864 -41.24864 -39.86580 -39.02898 -37.67505 -36.24466 -35.28390 -34.78047 -32.30647 -32.15451 -29.93832 -28.31995 -28.22077 -27.17728 -26.59638 -24.84258 -22.93745 -22.46637 -21.69946 -21.24544 -20.15497 -19.40668 -19.09405 -18.10202 -17.64177 -17.45585 -17.06859 -16.81679 -16.60165 -16.39437 -15.86878 -15.84675 -15.56147 -15.28079 -15.04844 -14.85306 -14.73228 -14.36174 -14.12789 -14.05434 -13.52399 -13.38599 -13.06930 -13.02108 -12.99223 -12.86398 -12.69254 -12.49112 -12.13113 -12.06640 -12.04136 -11.97079 -11.67413 -11.47332 -11.39896 -11.07978 -10.87169 -10.79932 -10.58085 -10.28359 -10.14262 -8.62698 -8.49580 -6.27131 0.28967 1.29332 1.31573 1.42636 1.59307 1.72436 2.04355 2.12030 2.53332 2.59010 2.93940 3.06591 3.30397 3.53663 3.69867 3.79494 3.92321 4.13486 4.28050 4.39387 4.46897 4.52392 4.56574 4.60274 4.64871 4.75936 4.78633 4.83322 4.90076 4.95665 4.98313 5.03717 5.04839 5.15790 5.21224 5.21809 5.25859 5.29122 5.30502 5.49346 5.51241 5.90158 6.00461 6.24592 6.47840 6.67071 6.80099 6.91928 7.07222 7.41171 7.62404 8.49939 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042761 B = 0.001661 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.638944 B =16856.400820 C =17299.638329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.122 4.122 6 C 0.071 3.929 7 O -0.601 6.601 8 C 0.125 3.875 9 N -0.685 5.685 10 C 0.523 3.477 11 O -0.541 6.541 12 C 0.485 3.515 13 O -0.544 6.544 14 N -0.582 5.582 15 C -0.058 4.058 16 C -0.047 4.047 17 N -0.309 5.309 18 N -0.163 5.163 19 C -0.355 4.355 20 H 0.142 0.858 21 C -0.004 4.004 22 N -0.821 5.821 23 Si 1.019 2.981 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.243 1.243 27 C -0.074 4.074 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.396 0.604 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.416 0.584 44 H 0.423 0.577 45 H 0.176 0.824 46 H 0.278 0.722 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 -9.038 -24.300 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.066 4.066 3 C -0.207 4.207 4 C -0.135 4.135 5 C -0.160 4.160 6 C -0.006 4.006 7 O -0.409 6.409 8 C 0.003 3.997 9 N -0.339 5.339 10 C 0.303 3.697 11 O -0.419 6.419 12 C 0.267 3.733 13 O -0.423 6.423 14 N -0.227 5.227 15 C -0.164 4.164 16 C -0.223 4.223 17 N -0.140 5.140 18 N 0.069 4.931 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.225 4.225 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.245 0.755 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.255 0.745 44 H 0.261 0.739 45 H 0.192 0.808 46 H 0.088 0.912 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.427 -7.665 -23.083 24.920 hybrid contribution 0.474 -0.586 -0.210 0.782 sum 5.901 -8.250 -23.293 25.406 Atomic orbital electron populations 1.22003 0.93863 1.02587 1.02278 1.20716 0.96383 0.96055 0.93470 1.22003 1.01594 0.94858 1.02276 1.21403 1.01485 0.99345 0.91261 1.21603 1.01645 1.00176 0.92538 1.22285 0.97973 0.95332 0.85035 1.86431 1.78198 1.58669 1.17633 1.21724 0.99730 0.96284 0.81958 1.45807 1.51725 1.31992 1.04344 1.19613 0.81097 0.84213 0.84736 1.90733 1.37945 1.26178 1.87011 1.20335 0.82701 0.85470 0.84842 1.90645 1.38416 1.26763 1.86449 1.42083 1.48654 1.29461 1.02499 1.17313 1.12302 1.01039 0.85795 1.24241 1.03585 0.98510 0.95944 1.78151 1.20560 1.15605 0.99725 1.44837 1.27063 1.15387 1.05814 1.20671 1.40331 1.10716 0.76874 0.84095 1.26878 0.93725 0.93998 1.06994 1.70374 1.25334 1.10030 1.39079 0.84571 0.78256 0.80228 0.73128 1.19153 1.20048 1.16618 1.22008 1.09528 1.02005 0.88918 0.93274 0.91092 0.91908 0.91911 0.91098 0.93270 0.90419 0.90420 0.91457 0.91455 0.92728 0.92736 0.75452 0.90482 0.90485 0.74515 0.73897 0.80769 0.91224 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 7.95 71.98 0.57 -1.35 16 2 C -0.07 -0.79 0.56 -52.18 -0.03 -0.81 16 3 C -0.15 -1.93 7.95 71.98 0.57 -1.36 16 4 C -0.10 -0.85 4.27 30.59 0.13 -0.72 16 5 C -0.12 -1.27 4.88 30.59 0.15 -1.12 16 6 C 0.07 0.66 7.05 71.98 0.51 1.16 16 7 O -0.60 -7.38 13.66 -148.98 -2.04 -9.42 16 8 C 0.13 2.01 4.56 86.38 0.39 2.41 16 9 N -0.69 -14.99 4.95 -464.57 -2.30 -17.29 16 10 C 0.52 15.05 7.88 87.23 0.69 15.74 16 11 O -0.54 -16.77 16.47 -3.27 -0.05 -16.83 16 12 C 0.48 17.24 7.85 87.23 0.69 17.92 16 13 O -0.54 -22.06 13.62 -3.41 -0.05 -22.10 16 14 N -0.58 -21.52 5.45 -305.33 -1.66 -23.19 16 15 C -0.06 -2.69 6.90 37.83 0.26 -2.43 16 16 C -0.05 -2.53 10.84 85.44 0.93 -1.60 16 17 N -0.31 -18.36 10.41 -56.43 -0.59 -18.94 16 18 N -0.16 -8.99 3.73 -189.98 -0.71 -9.69 16 19 C -0.35 -18.62 10.24 84.02 0.86 -17.76 16 20 H 0.14 6.42 7.84 -2.91 -0.02 6.40 16 21 C 0.00 -0.19 5.50 84.96 0.47 0.28 16 22 N -0.82 -46.70 11.83 21.66 0.26 -46.44 16 23 Si 1.02 38.10 29.56 68.60 2.03 40.12 16 24 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 25 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 26 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 27 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 28 H 0.05 0.74 6.86 -2.38 -0.02 0.73 16 29 H 0.07 0.83 6.43 -2.38 -0.02 0.82 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 33 H 0.05 0.74 6.86 -2.39 -0.02 0.73 16 34 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 37 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 38 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.40 1.33 9.12 -74.06 -0.68 0.65 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.42 8.86 5.63 -92.71 -0.52 8.33 16 44 H 0.42 13.13 8.29 -92.71 -0.77 12.37 16 45 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 46 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 47 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -74.97 386.67 1.10 -73.87 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.93 Total: 42.02 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 7.14 Total: 7.88 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -5.00 Total: -115.55 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -2.14 Total: -48.34 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.12 kcal Total: -74.97 1.10 -73.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324835817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.591 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds