Wall clock time and date at job start Tue Mar 31 2020 21:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00218 * 2 1 4 4 C 1.53004 * 109.47073 * 270.00012 * 3 2 1 5 5 C 1.52993 * 109.47179 * 299.99731 * 4 3 2 6 6 C 1.53002 * 109.47085 * 60.00296 * 4 3 2 7 7 C 1.53004 * 109.47172 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47244 * 180.02562 * 7 4 3 9 9 C 1.36939 * 120.00162 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00165 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99892 * 180.02562 * 9 8 7 12 12 N 1.31611 * 120.00428 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46835 * 89.99682 * 13 11 9 15 15 H 1.48497 * 109.47134 * 209.99782 * 13 11 9 16 16 H 1.48502 * 109.47046 * 330.00236 * 13 11 9 17 17 C 1.34781 * 119.99750 * 179.97438 * 2 1 3 18 18 O 1.21611 * 119.99922 * 185.71680 * 17 2 1 19 19 C 1.47304 * 119.99996 * 5.72524 * 17 2 1 20 20 C 1.38326 * 120.73594 * 280.66308 * 19 17 2 21 21 N 1.34952 * 119.01987 * 180.02562 * 20 19 17 22 22 C 1.46496 * 119.70269 * 179.97438 * 21 20 19 23 23 C 1.34452 * 120.58786 * 0.25449 * 21 20 19 24 24 O 1.21912 * 119.19617 * 179.72494 * 23 21 20 25 25 N 1.33326 * 121.60316 * 359.47384 * 23 21 20 26 26 C 1.32212 * 120.92646 * 0.52610 * 25 23 21 27 27 O 1.35011 * 120.33272 * 179.71451 * 26 25 23 28 28 H 1.08999 * 109.46847 * 270.79318 * 1 2 3 29 29 H 1.08997 * 109.46772 * 30.78628 * 1 2 3 30 30 H 1.09001 * 109.46985 * 150.78711 * 1 2 3 31 31 H 1.09002 * 109.47634 * 30.00188 * 3 2 1 32 32 H 1.09001 * 109.47388 * 150.00405 * 3 2 1 33 33 H 1.09002 * 109.46856 * 60.00094 * 5 4 3 34 34 H 1.08996 * 109.47451 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47669 * 300.00673 * 5 4 3 36 36 H 1.08994 * 109.47204 * 59.99992 * 6 4 3 37 37 H 1.08996 * 109.47133 * 180.02562 * 6 4 3 38 38 H 1.09002 * 109.46890 * 299.99869 * 6 4 3 39 39 H 1.09007 * 109.47194 * 300.00050 * 7 4 3 40 40 H 1.08999 * 109.46904 * 59.99730 * 7 4 3 41 41 H 0.96997 * 120.00165 * 359.97438 * 8 7 4 42 42 H 0.96993 * 120.00566 * 180.02562 * 12 11 9 43 43 H 1.07997 * 120.49077 * 359.97438 * 20 19 17 44 44 H 1.09000 * 109.47396 * 89.99872 * 22 21 20 45 45 H 1.08997 * 109.47109 * 329.99547 * 22 21 20 46 46 H 1.09000 * 109.47080 * 209.99867 * 22 21 20 47 47 H 0.96701 * 113.99947 * 354.99779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2794 0.6440 -2.1638 6 6 1.1157 1.8933 -2.1638 7 6 3.2171 3.0356 -1.4426 8 7 3.4607 3.4588 -2.8237 9 6 4.1338 4.6248 -3.0740 10 1 4.4847 5.2326 -2.2531 11 6 4.3642 5.0260 -4.3828 12 7 3.9362 4.2856 -5.3831 13 14 5.2818 6.6170 -4.7241 14 1 6.7376 6.3388 -4.8155 15 1 4.8071 7.1969 -6.0061 16 1 5.0301 7.5798 -3.6219 17 6 2.1389 -1.1673 0.0005 18 8 3.3505 -1.1699 0.1054 19 6 1.4078 -2.4398 -0.1262 20 6 0.7660 -2.9980 0.9646 21 7 0.1068 -4.1654 0.8096 22 6 -0.5777 -4.7701 1.9549 23 6 0.0775 -4.7810 -0.3853 24 8 -0.5213 -5.8372 -0.4956 25 7 0.6832 -4.2621 -1.4537 26 6 1.3467 -3.1215 -1.3715 27 8 1.9604 -2.6097 -2.4597 28 1 -0.3633 0.0142 1.0276 29 1 -0.3633 0.8828 -0.5260 30 1 -0.3633 -0.8970 -0.5016 31 1 1.6086 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4607 0.9584 -3.1915 35 1 4.2318 0.5135 -1.6499 36 1 0.5267 2.6530 -1.6500 37 1 1.2973 2.2075 -3.1915 38 1 0.5706 0.9494 -2.1638 39 1 2.6276 3.7951 -0.9288 40 1 4.1694 2.9057 -0.9286 41 1 3.1459 2.9128 -3.5610 42 1 4.0974 4.5658 -6.2976 43 1 0.7926 -2.5073 1.9263 44 1 -1.6037 -4.4049 1.9994 45 1 -0.0560 -4.5011 2.8734 46 1 -0.5825 -5.8545 1.8442 47 1 1.9258 -3.1838 -3.2371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329357866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:33 Heat of formation + Delta-G solvation = -38.700703 kcal Electronic energy + Delta-G solvation = -30618.321312 eV Core-core repulsion = 26417.452000 eV Total energy + Delta-G solvation = -4200.869312 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.33416 -40.26878 -39.00436 -37.47104 -37.04461 -35.19329 -35.04391 -33.16446 -31.81261 -30.14698 -28.23249 -27.96768 -26.78523 -26.02937 -25.50402 -25.17562 -23.84770 -22.48008 -20.29240 -20.21644 -18.72844 -18.41768 -17.89637 -17.22817 -17.12760 -16.65257 -16.29794 -15.73962 -15.58064 -14.93059 -14.90749 -14.57433 -14.29710 -13.98636 -13.78660 -13.73127 -13.65030 -13.31412 -13.24297 -13.05699 -12.76699 -12.57180 -12.28637 -12.21847 -11.98369 -11.36810 -11.22483 -11.11445 -10.95475 -10.79355 -10.72133 -10.60254 -10.49494 -10.25222 -10.21451 -10.03478 -9.76735 -9.64733 -9.02877 -8.82639 -8.65542 -6.85345 -5.72246 -2.99607 0.10729 0.99850 1.78124 2.32838 2.78719 2.87239 3.27363 3.46199 3.51212 3.52703 3.64511 3.86672 4.14439 4.40151 4.63237 4.63638 4.70225 4.79125 4.87411 5.00503 5.05411 5.14399 5.29166 5.41385 5.42450 5.45461 5.59455 5.71014 5.74491 5.92648 5.95616 6.11749 6.19212 6.30326 6.43561 6.54120 6.64619 6.71947 6.76959 6.80233 6.96561 7.02825 7.19867 7.29136 7.67915 7.74118 7.99081 8.47355 9.58465 10.17974 10.52528 11.50898 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.002504 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.057940 B =11177.770670 C =11633.322159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.599 5.599 3 C 0.127 3.873 4 C -0.087 4.087 5 C -0.128 4.128 6 C -0.136 4.136 7 C 0.166 3.834 8 N -0.727 5.727 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.906 3.094 14 H -0.291 1.291 15 H -0.292 1.292 16 H -0.283 1.283 17 C 0.585 3.415 18 O -0.511 6.511 19 C -0.285 4.285 20 C 0.234 3.766 21 N -0.520 5.520 22 C 0.059 3.941 23 C 0.653 3.347 24 O -0.529 6.529 25 N -0.609 5.609 26 C 0.488 3.512 27 O -0.428 6.428 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.017 0.983 40 H 0.019 0.981 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.188 0.812 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.081 -15.851 17.669 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.331 5.331 3 C 0.004 3.996 4 C -0.088 4.088 5 C -0.186 4.186 6 C -0.193 4.193 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.367 4.367 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.219 1.219 16 H -0.209 1.209 17 C 0.369 3.631 18 O -0.385 6.385 19 C -0.298 4.298 20 C 0.095 3.905 21 N -0.234 5.234 22 C -0.083 4.083 23 C 0.355 3.645 24 O -0.403 6.403 25 N -0.367 5.367 26 C 0.286 3.714 27 O -0.222 6.222 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.205 0.795 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -11.779 -16.493 17.317 26.658 hybrid contribution 0.339 0.833 -0.391 0.980 sum -11.440 -15.660 16.926 25.741 Atomic orbital electron populations 1.21950 0.79773 1.03826 1.01545 1.47711 1.06803 1.05960 1.72668 1.21634 0.97471 0.82989 0.97459 1.21119 0.96522 0.97091 0.94063 1.21760 0.99191 0.96750 1.00851 1.21882 0.95741 0.99776 1.01885 1.20578 0.95667 0.91129 0.88883 1.42383 1.68138 1.25759 1.00988 1.19232 1.27610 0.98151 0.91703 0.91295 1.24714 1.01815 0.98963 0.95606 1.69649 1.51623 1.38944 0.98115 0.86203 0.79564 0.83285 0.77221 1.21803 1.21875 1.20853 1.17228 0.86635 0.82210 0.77006 1.90859 1.13176 1.86644 1.47812 1.19532 1.14611 1.03091 0.92539 1.22556 0.84385 0.84216 0.99384 1.46176 1.43479 1.19611 1.14135 1.22304 0.98059 1.01972 0.85930 1.17415 0.82303 0.85794 0.78961 1.91003 1.45265 1.21290 1.82734 1.69714 1.22889 1.15264 1.28860 1.20162 0.80456 0.84966 0.85790 1.85098 1.69060 1.46752 1.21281 0.92623 0.89691 0.91805 0.90303 0.89416 0.93302 0.92143 0.92798 0.93289 0.91439 0.93615 0.96545 0.96294 0.77984 0.93596 0.79464 0.89747 0.89070 0.88045 0.72051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 9.07 59.85 0.54 1.05 16 2 N -0.60 -6.14 2.40 -182.90 -0.44 -6.58 16 3 C 0.13 1.56 4.62 -4.05 -0.02 1.54 16 4 C -0.09 -1.37 0.60 -154.51 -0.09 -1.46 16 5 C -0.13 -2.25 7.06 37.15 0.26 -1.99 16 6 C -0.14 -2.03 7.05 37.16 0.26 -1.77 16 7 C 0.17 3.28 5.15 -4.04 -0.02 3.26 16 8 N -0.73 -18.24 5.00 -59.91 -0.30 -18.54 16 9 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 12 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 13 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.58 6.84 4.95 -12.57 -0.06 6.78 16 18 O -0.51 -8.00 15.34 5.27 0.08 -7.92 16 19 C -0.28 -2.69 3.83 -104.70 -0.40 -3.09 16 20 C 0.23 1.38 9.86 -16.15 -0.16 1.22 16 21 N -0.52 -3.78 2.96 -128.87 -0.38 -4.17 16 22 C 0.06 0.21 10.35 59.84 0.62 0.83 16 23 C 0.65 7.90 8.32 -88.50 -0.74 7.16 16 24 O -0.53 -8.07 16.66 5.00 0.08 -7.99 16 25 N -0.61 -7.50 10.38 -16.47 -0.17 -7.68 16 26 C 0.49 5.28 7.93 -15.91 -0.13 5.15 16 27 O -0.43 -4.45 11.97 -16.74 -0.20 -4.65 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.62 6.01 -51.93 -0.31 0.31 16 30 H 0.06 0.43 6.71 -51.93 -0.35 0.08 16 31 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.09 1.19 7.35 -51.93 -0.38 0.81 16 33 H 0.05 0.79 5.09 -51.93 -0.26 0.52 16 34 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 35 H 0.05 1.02 7.86 -51.93 -0.41 0.61 16 36 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.07 1.24 6.86 -51.93 -0.36 0.88 16 38 H 0.04 0.59 5.98 -51.93 -0.31 0.28 16 39 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.38 10.14 5.36 -40.82 -0.22 9.92 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.19 0.30 8.05 -52.49 -0.42 -0.12 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 0.02 8.02 -51.93 -0.42 -0.39 16 46 H 0.10 0.51 7.35 -51.93 -0.38 0.13 16 47 H 0.42 2.68 8.98 45.56 0.41 3.09 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -39.06 378.28 -5.95 -45.00 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.84 Total: 5.48 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -0.18 Total: 11.40 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.57 Total: -64.57 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.06 -5.95 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329357866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.304 kcal (2) G-P(sol) polarization free energy of solvation -39.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds