Wall clock time and date at job start Tue Mar 31 2020 21:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00218 * 2 1 4 4 C 1.53004 * 109.47073 * 270.00012 * 3 2 1 5 5 C 1.52993 * 109.47179 * 299.99731 * 4 3 2 6 6 C 1.53002 * 109.47085 * 60.00296 * 4 3 2 7 7 C 1.53004 * 109.47172 * 179.97438 * 4 3 2 8 8 N 1.46491 * 109.47244 * 180.02562 * 7 4 3 9 9 C 1.36939 * 120.00162 * 180.02562 * 8 7 4 10 10 H 1.07996 * 120.00165 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99892 * 180.02562 * 9 8 7 12 12 N 1.31611 * 120.00428 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99743 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46835 * 89.99682 * 13 11 9 15 15 H 1.48497 * 109.47134 * 209.99782 * 13 11 9 16 16 H 1.48502 * 109.47046 * 330.00236 * 13 11 9 17 17 C 1.34781 * 119.99750 * 179.97438 * 2 1 3 18 18 O 1.21611 * 119.99922 * 185.71680 * 17 2 1 19 19 C 1.47304 * 119.99996 * 5.72524 * 17 2 1 20 20 C 1.38326 * 120.73594 * 280.66308 * 19 17 2 21 21 N 1.34952 * 119.01987 * 180.02562 * 20 19 17 22 22 C 1.46496 * 119.70269 * 179.97438 * 21 20 19 23 23 C 1.34452 * 120.58786 * 0.25449 * 21 20 19 24 24 O 1.21912 * 119.19617 * 179.72494 * 23 21 20 25 25 N 1.33326 * 121.60316 * 359.47384 * 23 21 20 26 26 C 1.32212 * 120.92646 * 0.52610 * 25 23 21 27 27 O 1.35011 * 120.33272 * 179.71451 * 26 25 23 28 28 H 1.08999 * 109.46847 * 270.79318 * 1 2 3 29 29 H 1.08997 * 109.46772 * 30.78628 * 1 2 3 30 30 H 1.09001 * 109.46985 * 150.78711 * 1 2 3 31 31 H 1.09002 * 109.47634 * 30.00188 * 3 2 1 32 32 H 1.09001 * 109.47388 * 150.00405 * 3 2 1 33 33 H 1.09002 * 109.46856 * 60.00094 * 5 4 3 34 34 H 1.08996 * 109.47451 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47669 * 300.00673 * 5 4 3 36 36 H 1.08994 * 109.47204 * 59.99992 * 6 4 3 37 37 H 1.08996 * 109.47133 * 180.02562 * 6 4 3 38 38 H 1.09002 * 109.46890 * 299.99869 * 6 4 3 39 39 H 1.09007 * 109.47194 * 300.00050 * 7 4 3 40 40 H 1.08999 * 109.46904 * 59.99730 * 7 4 3 41 41 H 0.96997 * 120.00165 * 359.97438 * 8 7 4 42 42 H 0.96993 * 120.00566 * 180.02562 * 12 11 9 43 43 H 1.07997 * 120.49077 * 359.97438 * 20 19 17 44 44 H 1.09000 * 109.47396 * 89.99872 * 22 21 20 45 45 H 1.08997 * 109.47109 * 329.99547 * 22 21 20 46 46 H 1.09000 * 109.47080 * 209.99867 * 22 21 20 47 47 H 0.96701 * 113.99947 * 354.99779 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2794 0.6440 -2.1638 6 6 1.1157 1.8933 -2.1638 7 6 3.2171 3.0356 -1.4426 8 7 3.4607 3.4588 -2.8237 9 6 4.1338 4.6248 -3.0740 10 1 4.4847 5.2326 -2.2531 11 6 4.3642 5.0260 -4.3828 12 7 3.9362 4.2856 -5.3831 13 14 5.2818 6.6170 -4.7241 14 1 6.7376 6.3388 -4.8155 15 1 4.8071 7.1969 -6.0061 16 1 5.0301 7.5798 -3.6219 17 6 2.1389 -1.1673 0.0005 18 8 3.3505 -1.1699 0.1054 19 6 1.4078 -2.4398 -0.1262 20 6 0.7660 -2.9980 0.9646 21 7 0.1068 -4.1654 0.8096 22 6 -0.5777 -4.7701 1.9549 23 6 0.0775 -4.7810 -0.3853 24 8 -0.5213 -5.8372 -0.4956 25 7 0.6832 -4.2621 -1.4537 26 6 1.3467 -3.1215 -1.3715 27 8 1.9604 -2.6097 -2.4597 28 1 -0.3633 0.0142 1.0276 29 1 -0.3633 0.8828 -0.5260 30 1 -0.3633 -0.8970 -0.5016 31 1 1.6086 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 2.7344 -0.2999 -2.1637 34 1 3.4607 0.9584 -3.1915 35 1 4.2318 0.5135 -1.6499 36 1 0.5267 2.6530 -1.6500 37 1 1.2973 2.2075 -3.1915 38 1 0.5706 0.9494 -2.1638 39 1 2.6276 3.7951 -0.9288 40 1 4.1694 2.9057 -0.9286 41 1 3.1459 2.9128 -3.5610 42 1 4.0974 4.5658 -6.2976 43 1 0.7926 -2.5073 1.9263 44 1 -1.6037 -4.4049 1.9994 45 1 -0.0560 -4.5011 2.8734 46 1 -0.5825 -5.8545 1.8442 47 1 1.9258 -3.1838 -3.2371 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329357866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:32 Heat of formation + Delta-G solvation = -72.281118 kcal Electronic energy + Delta-G solvation = -30619.777468 eV Core-core repulsion = 26417.452000 eV Total energy + Delta-G solvation = -4202.325468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.06737 -41.19857 -39.82117 -38.67480 -37.96366 -36.37785 -35.81247 -34.85859 -32.76327 -31.95463 -28.90593 -28.66570 -28.05588 -27.27313 -26.84983 -25.96268 -24.91935 -24.05035 -21.18941 -20.99429 -19.84241 -19.42065 -19.10061 -18.62050 -17.87980 -17.41384 -17.24516 -16.68304 -16.60892 -16.38849 -15.73034 -15.59145 -15.39509 -15.21331 -15.14370 -14.92376 -14.42770 -14.38495 -14.14361 -14.10069 -13.80098 -13.64446 -13.45395 -13.21049 -12.92302 -12.78785 -12.64458 -12.44627 -12.39652 -12.25968 -12.19975 -12.08015 -11.62052 -11.59426 -11.49931 -11.34535 -11.29126 -10.90469 -10.81643 -9.76839 -9.56400 -8.93317 -7.91687 -5.18874 -0.49553 0.21305 1.16385 1.47403 1.49161 1.49958 1.57955 2.04669 2.12314 2.47959 2.58743 3.03130 3.32449 3.41838 3.52696 3.89530 3.95383 4.02196 4.08749 4.09901 4.20600 4.30468 4.36818 4.44983 4.54003 4.63916 4.72109 4.79923 4.86811 4.88986 4.94285 4.95649 4.98078 5.03905 5.10396 5.21227 5.23156 5.28396 5.50782 5.53216 5.57440 5.60641 6.05109 6.30955 6.38489 6.50802 6.88729 7.13863 7.37409 8.16313 8.38729 9.32222 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.002504 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.057940 B =11177.770670 C =11633.322159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.593 5.593 3 C 0.136 3.864 4 C -0.079 4.079 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.163 3.837 8 N -0.740 5.740 9 C -0.240 4.240 10 H 0.076 0.924 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.972 3.028 14 H -0.291 1.291 15 H -0.296 1.296 16 H -0.267 1.267 17 C 0.590 3.410 18 O -0.558 6.558 19 C -0.310 4.310 20 C 0.274 3.726 21 N -0.509 5.509 22 C 0.051 3.949 23 C 0.646 3.354 24 O -0.575 6.575 25 N -0.642 5.642 26 C 0.485 3.515 27 O -0.444 6.444 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.011 0.989 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.245 0.755 44 H 0.103 0.897 45 H 0.136 0.864 46 H 0.082 0.918 47 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 -15.089 21.186 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.324 5.324 3 C 0.012 3.988 4 C -0.080 4.080 5 C -0.171 4.171 6 C -0.183 4.183 7 C 0.036 3.964 8 N -0.383 5.383 9 C -0.372 4.372 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.623 5.623 13 Si 0.801 3.199 14 H -0.218 1.218 15 H -0.223 1.223 16 H -0.192 1.192 17 C 0.375 3.625 18 O -0.436 6.436 19 C -0.323 4.323 20 C 0.133 3.867 21 N -0.220 5.220 22 C -0.089 4.089 23 C 0.348 3.652 24 O -0.453 6.453 25 N -0.402 5.402 26 C 0.285 3.715 27 O -0.240 6.240 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.208 0.792 42 H 0.058 0.942 43 H 0.261 0.739 44 H 0.122 0.878 45 H 0.154 0.846 46 H 0.101 0.899 47 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -13.431 -15.713 20.894 29.391 hybrid contribution 0.817 0.552 -1.393 1.707 sum -12.614 -15.160 19.501 27.735 Atomic orbital electron populations 1.22228 0.77205 1.04000 1.04255 1.47734 1.08241 1.04749 1.71701 1.21428 0.98166 0.84762 0.94395 1.21045 0.95956 0.94295 0.96753 1.21604 0.98910 0.98044 0.98592 1.21787 0.95569 1.01456 0.99453 1.20756 0.96031 0.93535 0.86106 1.42602 1.67800 1.25009 1.02937 1.19659 1.26747 0.98825 0.91939 0.90652 1.25541 1.03494 1.02416 0.95595 1.69816 1.53478 1.40797 0.98162 0.85152 0.77914 0.79727 0.77057 1.21819 1.22296 1.19198 1.17436 0.86034 0.83026 0.75962 1.90845 1.15345 1.87372 1.49994 1.19385 1.16822 1.02889 0.93154 1.23299 0.80760 0.82531 1.00122 1.46171 1.42586 1.19529 1.13725 1.22695 0.99549 1.00858 0.85787 1.17481 0.82012 0.85547 0.80195 1.90966 1.47318 1.23251 1.83756 1.69565 1.24152 1.16275 1.30167 1.20298 0.80138 0.84725 0.86296 1.85069 1.69223 1.47569 1.22117 0.88583 0.89754 0.91474 0.87053 0.90665 0.92012 0.95706 0.94746 0.91458 0.95413 0.91293 0.95083 0.97110 0.79158 0.94170 0.73870 0.87819 0.84583 0.89946 0.70719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 9.07 127.77 1.16 1.76 16 2 N -0.59 -10.29 2.40 -850.82 -2.04 -12.33 16 3 C 0.14 2.99 4.62 86.38 0.40 3.39 16 4 C -0.08 -2.44 0.60 -52.18 -0.03 -2.47 16 5 C -0.11 -4.13 7.06 71.98 0.51 -3.62 16 6 C -0.13 -3.61 7.05 71.98 0.51 -3.10 16 7 C 0.16 6.39 5.15 86.38 0.44 6.83 16 8 N -0.74 -37.83 5.00 -343.45 -1.72 -39.55 16 9 C -0.24 -13.52 9.99 84.03 0.84 -12.68 16 10 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 12 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 13 Si 0.97 46.79 29.55 68.60 2.03 48.81 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 C 0.59 12.55 4.95 86.63 0.43 12.98 16 18 O -0.56 -17.09 15.34 -4.06 -0.06 -17.15 16 19 C -0.31 -5.14 3.83 -19.91 -0.08 -5.22 16 20 C 0.27 2.04 9.86 84.23 0.83 2.87 16 21 N -0.51 -5.85 2.96 -679.96 -2.01 -7.86 16 22 C 0.05 0.16 10.35 127.77 1.32 1.48 16 23 C 0.65 15.18 8.32 179.61 1.49 16.67 16 24 O -0.57 -17.81 16.66 -5.03 -0.08 -17.90 16 25 N -0.64 -15.91 10.38 -438.19 -4.55 -20.46 16 26 C 0.48 10.30 7.93 85.59 0.68 10.97 16 27 O -0.44 -9.51 11.97 -82.83 -0.99 -10.51 16 28 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.08 0.85 6.01 -2.39 -0.01 0.84 16 30 H 0.07 0.63 6.71 -2.39 -0.02 0.62 16 31 H 0.11 1.79 8.07 -2.39 -0.02 1.77 16 32 H 0.07 1.91 7.35 -2.39 -0.02 1.89 16 33 H 0.06 2.04 5.09 -2.39 -0.01 2.03 16 34 H 0.02 1.04 6.86 -2.39 -0.02 1.02 16 35 H 0.03 1.35 7.86 -2.39 -0.02 1.33 16 36 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.03 1.01 6.86 -2.39 -0.02 1.00 16 38 H 0.07 1.64 5.98 -2.39 -0.01 1.63 16 39 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.38 20.57 5.36 -92.71 -0.50 20.07 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.25 -0.98 8.05 -2.91 -0.02 -1.01 16 44 H 0.10 0.00 8.14 -2.39 -0.02 -0.01 16 45 H 0.14 -0.75 8.02 -2.39 -0.02 -0.77 16 46 H 0.08 0.67 7.35 -2.39 -0.02 0.65 16 47 H 0.43 6.11 8.98 -74.06 -0.67 5.45 16 Total: -1.00 -90.96 378.28 -0.32 -91.28 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.14 Total: 20.13 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 8.97 Total: 25.76 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -10.04 Total: -140.42 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.14 Total: -45.56 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -90.96 -0.32 -91.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329357866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.997 kcal (2) G-P(sol) polarization free energy of solvation -90.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds