Wall clock time and date at job start Tue Mar 31 2020 20:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47284 * 2 1 4 4 N 1.29940 * 125.38291 * 90.35059 * 3 2 1 5 5 C 1.36065 * 108.47905 * 180.16625 * 4 3 2 6 6 C 1.47421 * 126.44570 * 179.82108 * 5 4 3 7 7 O 1.21611 * 119.99832 * 185.76974 * 6 5 4 8 8 N 1.34777 * 120.00052 * 5.77233 * 6 5 4 9 9 C 1.46504 * 120.00065 * 5.28380 * 8 6 5 10 10 C 1.46496 * 120.00224 * 185.29048 * 8 6 5 11 11 C 1.53007 * 109.47100 * 270.00005 * 10 8 6 12 12 H 1.08998 * 109.46601 * 294.99499 * 11 10 8 13 13 C 1.52994 * 109.47406 * 174.99877 * 11 10 8 14 14 N 1.46899 * 109.46853 * 54.99312 * 11 10 8 15 15 C 1.46903 * 110.99762 * 204.99956 * 14 11 10 16 16 C 1.50698 * 109.47204 * 180.02562 * 15 14 11 17 17 O 1.21298 * 120.00016 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00314 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00379 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99776 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00225 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00129 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00126 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46987 * 89.99802 * 23 21 19 25 25 H 1.48494 * 109.47291 * 210.00203 * 23 21 19 26 26 H 1.48499 * 109.46673 * 330.00187 * 23 21 19 27 27 C 1.36092 * 107.10222 * 359.56144 * 5 4 3 28 28 O 1.34051 * 125.38111 * 270.02857 * 3 2 1 29 29 H 1.08996 * 109.46666 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46607 * 299.99894 * 1 2 3 31 31 H 1.08998 * 109.46933 * 60.00127 * 1 2 3 32 32 H 1.09009 * 109.47022 * 240.00244 * 2 1 3 33 33 H 1.08999 * 109.47400 * 120.00485 * 2 1 3 34 34 H 1.08999 * 109.47186 * 275.32102 * 9 8 6 35 35 H 1.09004 * 109.46667 * 35.31912 * 9 8 6 36 36 H 1.08995 * 109.46936 * 155.31733 * 9 8 6 37 37 H 1.09004 * 109.46934 * 29.99078 * 10 8 6 38 38 H 1.09001 * 109.47590 * 149.99638 * 10 8 6 39 39 H 1.09002 * 109.47429 * 59.99320 * 13 11 10 40 40 H 1.08998 * 109.47291 * 179.97438 * 13 11 10 41 41 H 1.09012 * 109.47072 * 299.99928 * 13 11 10 42 42 H 1.00909 * 110.99755 * 81.05491 * 14 11 10 43 43 H 1.08996 * 109.47213 * 300.00422 * 15 14 11 44 44 H 1.09004 * 109.46690 * 60.00623 * 15 14 11 45 45 H 0.97004 * 119.99679 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00114 * 180.02562 * 22 21 19 47 47 H 1.07999 * 126.52014 * 180.28795 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2893 2.1279 1.0594 5 6 2.7175 3.3574 0.6638 6 6 3.1121 4.4724 1.5438 7 8 3.3777 5.5589 1.0666 8 7 3.1786 4.2874 2.8772 9 6 2.9722 2.9518 3.4427 10 6 3.4570 5.4220 3.7611 11 6 4.9682 5.5533 3.9617 12 1 5.3418 4.6769 4.4912 13 6 5.2666 6.8100 4.7817 14 7 5.6289 5.6538 2.6535 15 6 7.0226 5.1959 2.7312 16 6 7.6665 5.3139 1.3738 17 8 7.0274 5.7383 0.4342 18 7 8.9524 4.9481 1.2038 19 6 9.5384 5.0559 -0.0310 20 1 8.9695 5.4345 -0.8674 21 6 10.8642 4.6792 -0.2061 22 7 11.4260 4.7831 -1.3896 23 14 11.8483 4.0251 1.2407 24 1 11.6982 2.5496 1.3147 25 1 13.2817 4.3684 1.0601 26 1 11.3472 4.6373 2.4973 27 6 2.7184 3.3621 -0.6971 28 8 2.2906 2.1527 -1.0929 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9047 2.7727 3.5713 35 1 3.3875 2.2034 2.7677 36 1 3.4708 2.8857 4.4096 37 1 3.0695 6.3364 3.3117 38 1 2.9754 5.2585 4.7251 39 1 4.7762 6.7355 5.7524 40 1 6.3431 6.9033 4.9250 41 1 4.8928 7.6866 4.2523 42 1 5.5771 6.5951 2.2936 43 1 7.5680 5.8115 3.4464 44 1 7.0456 4.1554 3.0553 45 1 9.4634 4.6084 1.9551 46 1 12.3515 4.5198 -1.5119 47 1 3.0086 4.1825 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331427972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:09 Heat of formation + Delta-G solvation = -30.512302 kcal Electronic energy + Delta-G solvation = -30046.913756 eV Core-core repulsion = 25846.399520 eV Total energy + Delta-G solvation = -4200.514236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.41888 -39.53132 -38.36377 -36.66769 -35.25214 -34.63293 -34.04158 -33.79201 -31.61506 -30.86311 -29.52027 -27.39492 -26.34832 -26.18384 -24.56208 -23.77818 -23.21684 -21.39545 -20.70535 -19.50356 -19.23804 -18.28479 -17.52414 -16.83187 -16.48199 -16.22307 -15.75767 -15.33861 -15.09287 -14.86303 -14.79001 -14.69083 -14.49638 -13.80105 -13.51581 -13.37505 -13.16160 -13.01682 -12.96519 -12.72169 -12.51436 -12.44536 -12.26073 -12.13010 -12.08871 -11.96500 -11.64361 -11.54529 -11.42653 -11.14180 -11.10504 -10.90888 -10.55188 -10.52347 -9.91952 -9.73468 -9.49747 -8.97247 -8.56214 -8.31645 -8.10628 -7.84696 -6.25053 -3.75707 1.22829 2.06027 2.56625 3.05969 3.10137 3.10970 3.17682 3.63013 3.78567 3.85040 4.14722 4.23713 4.62325 4.68389 4.79519 4.89906 4.92883 4.98874 5.07865 5.13588 5.23219 5.28634 5.36879 5.40854 5.41276 5.49096 5.57334 5.60187 5.67297 5.71908 5.75170 5.77365 5.80093 5.86030 5.91465 5.99675 6.05785 6.12895 6.19517 6.74367 7.30695 7.42885 7.64449 7.66370 7.83156 8.22309 8.50460 8.68013 9.02702 9.50014 9.93106 10.88518 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.003343 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.652624 B = 8374.305797 C =10103.743504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.185 3.815 4 N -0.457 5.457 5 C -0.064 4.064 6 C 0.609 3.391 7 O -0.503 6.503 8 N -0.596 5.596 9 C 0.092 3.908 10 C 0.133 3.867 11 C 0.065 3.935 12 H 0.075 0.925 13 C -0.182 4.182 14 N -0.648 5.648 15 C 0.049 3.951 16 C 0.452 3.548 17 O -0.555 6.555 18 N -0.596 5.596 19 C -0.301 4.301 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.885 5.885 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.016 3.984 28 O -0.198 6.198 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.355 0.645 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.369 0.631 46 H 0.272 0.728 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.824 -8.392 12.258 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.024 4.024 4 N -0.188 5.188 5 C -0.183 4.183 6 C 0.395 3.605 7 O -0.376 6.376 8 N -0.329 5.329 9 C -0.051 4.051 10 C 0.009 3.991 11 C -0.047 4.047 12 H 0.093 0.907 13 C -0.241 4.241 14 N -0.281 5.281 15 C -0.084 4.084 16 C 0.237 3.763 17 O -0.435 6.435 18 N -0.236 5.236 19 C -0.430 4.430 20 H 0.136 0.864 21 C -0.163 4.163 22 N -0.526 5.526 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.058 4.058 28 O -0.083 6.083 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.176 0.824 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.201 0.799 46 H 0.083 0.917 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.241 -8.356 11.574 25.592 hybrid contribution 1.776 0.385 0.960 2.055 sum -19.465 -7.970 12.534 24.485 Atomic orbital electron populations 1.21780 0.93155 1.02868 1.02961 1.20062 0.96735 0.84258 1.05316 1.26362 1.00159 0.97089 0.78765 1.70944 1.15907 1.02734 1.29203 1.21863 1.09203 0.94165 0.93104 1.16509 0.77089 0.85628 0.81289 1.90842 1.47402 1.25145 1.74204 1.47207 1.70916 1.09284 1.05471 1.21851 1.00786 0.83817 0.98655 1.21468 0.94498 0.89965 0.93172 1.22029 0.95296 0.97411 0.89988 0.90702 1.22476 1.02024 0.99002 1.00628 1.60099 1.13616 1.32038 1.22329 1.21717 0.89797 1.00727 0.96145 1.19777 0.82451 0.84070 0.89994 1.90599 1.62387 1.48448 1.42091 1.42221 1.10793 1.59644 1.10969 1.19425 0.95536 1.40862 0.87148 0.86378 1.25019 0.96542 0.97958 0.96754 1.69624 1.13722 1.47661 1.21548 0.86673 0.80656 0.79802 0.82251 1.19717 1.20267 1.19597 1.25365 0.98075 0.86305 0.96016 1.84370 1.63382 1.22714 1.37877 0.90971 0.91773 0.92154 0.88824 0.87596 0.93059 0.89715 0.92476 0.90022 0.90534 0.92225 0.92401 0.92046 0.82411 0.94193 0.90150 0.79873 0.91739 0.75300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.03 -0.18 6.56 -27.89 -0.18 -0.36 16 3 C 0.18 2.12 7.56 -13.08 -0.10 2.03 16 4 N -0.46 -6.04 8.10 -7.66 -0.06 -6.10 16 5 C -0.06 -0.97 6.60 -83.02 -0.55 -1.52 16 6 C 0.61 10.15 7.09 -12.52 -0.09 10.06 16 7 O -0.50 -9.89 15.38 5.27 0.08 -9.81 16 8 N -0.60 -8.08 2.78 -182.84 -0.51 -8.59 16 9 C 0.09 1.02 9.29 59.85 0.56 1.57 16 10 C 0.13 1.54 5.16 -4.04 -0.02 1.52 16 11 C 0.06 0.80 2.89 -67.71 -0.20 0.60 16 12 H 0.07 0.88 7.80 -51.93 -0.40 0.47 16 13 C -0.18 -1.87 9.16 37.15 0.34 -1.53 16 14 N -0.65 -10.99 3.94 -107.99 -0.43 -11.42 16 15 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 16 C 0.45 10.86 7.82 -10.99 -0.09 10.78 16 17 O -0.55 -15.76 15.78 5.54 0.09 -15.68 16 18 N -0.60 -14.87 5.09 -10.97 -0.06 -14.93 16 19 C -0.30 -8.82 10.16 -14.94 -0.15 -8.97 16 20 H 0.12 3.96 7.39 -52.49 -0.39 3.57 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -26.55 13.96 55.50 0.77 -25.78 16 23 Si 0.88 20.00 27.74 -169.99 -4.72 15.29 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -5.63 6.52 56.52 0.37 -5.26 16 27 C 0.02 0.22 11.95 29.96 0.36 0.58 16 28 O -0.20 -2.55 10.73 6.52 0.07 -2.48 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 35 H 0.08 1.07 5.89 -51.93 -0.31 0.77 16 36 H 0.06 0.51 8.03 -51.93 -0.42 0.10 16 37 H 0.08 1.05 7.50 -51.93 -0.39 0.66 16 38 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 41 H 0.06 0.65 8.13 -51.92 -0.42 0.23 16 42 H 0.35 6.65 8.17 -39.29 -0.32 6.33 16 43 H 0.04 0.63 7.44 -51.93 -0.39 0.25 16 44 H 0.08 1.32 8.06 -51.93 -0.42 0.91 16 45 H 0.37 8.12 5.76 -40.82 -0.24 7.89 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.23 2.94 8.06 -52.49 -0.42 2.51 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -36.90 392.85 -5.75 -42.65 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -7.04 Total: 14.76 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 0.12 Total: 16.15 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.28 Total: -66.81 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: 0.24 Total: -27.97 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.72 Total: 15.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.90 -5.75 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331427972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.140 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds