Wall clock time and date at job start Tue Mar 31 2020 20:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47284 * 2 1 4 4 N 1.29940 * 125.38291 * 90.35059 * 3 2 1 5 5 C 1.36065 * 108.47905 * 180.16625 * 4 3 2 6 6 C 1.47421 * 126.44570 * 179.82108 * 5 4 3 7 7 O 1.21611 * 119.99832 * 185.76974 * 6 5 4 8 8 N 1.34777 * 120.00052 * 5.77233 * 6 5 4 9 9 C 1.46504 * 120.00065 * 5.28380 * 8 6 5 10 10 C 1.46496 * 120.00224 * 185.29048 * 8 6 5 11 11 C 1.53007 * 109.47100 * 270.00005 * 10 8 6 12 12 H 1.08998 * 109.46601 * 294.99499 * 11 10 8 13 13 C 1.52994 * 109.47406 * 174.99877 * 11 10 8 14 14 N 1.46899 * 109.46853 * 54.99312 * 11 10 8 15 15 C 1.46903 * 110.99762 * 204.99956 * 14 11 10 16 16 C 1.50698 * 109.47204 * 180.02562 * 15 14 11 17 17 O 1.21298 * 120.00016 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00314 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00379 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99776 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00225 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00129 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00126 * 0.02562 * 21 19 18 24 24 H 1.48495 * 109.46987 * 89.99802 * 23 21 19 25 25 H 1.48494 * 109.47291 * 210.00203 * 23 21 19 26 26 H 1.48499 * 109.46673 * 330.00187 * 23 21 19 27 27 C 1.36092 * 107.10222 * 359.56144 * 5 4 3 28 28 O 1.34051 * 125.38111 * 270.02857 * 3 2 1 29 29 H 1.08996 * 109.46666 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46607 * 299.99894 * 1 2 3 31 31 H 1.08998 * 109.46933 * 60.00127 * 1 2 3 32 32 H 1.09009 * 109.47022 * 240.00244 * 2 1 3 33 33 H 1.08999 * 109.47400 * 120.00485 * 2 1 3 34 34 H 1.08999 * 109.47186 * 275.32102 * 9 8 6 35 35 H 1.09004 * 109.46667 * 35.31912 * 9 8 6 36 36 H 1.08995 * 109.46936 * 155.31733 * 9 8 6 37 37 H 1.09004 * 109.46934 * 29.99078 * 10 8 6 38 38 H 1.09001 * 109.47590 * 149.99638 * 10 8 6 39 39 H 1.09002 * 109.47429 * 59.99320 * 13 11 10 40 40 H 1.08998 * 109.47291 * 179.97438 * 13 11 10 41 41 H 1.09012 * 109.47072 * 299.99928 * 13 11 10 42 42 H 1.00909 * 110.99755 * 81.05491 * 14 11 10 43 43 H 1.08996 * 109.47213 * 300.00422 * 15 14 11 44 44 H 1.09004 * 109.46690 * 60.00623 * 15 14 11 45 45 H 0.97004 * 119.99679 * 0.02562 * 18 16 15 46 46 H 0.96998 * 120.00114 * 180.02562 * 22 21 19 47 47 H 1.07999 * 126.52014 * 180.28795 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2893 2.1279 1.0594 5 6 2.7175 3.3574 0.6638 6 6 3.1121 4.4724 1.5438 7 8 3.3777 5.5589 1.0666 8 7 3.1786 4.2874 2.8772 9 6 2.9722 2.9518 3.4427 10 6 3.4570 5.4220 3.7611 11 6 4.9682 5.5533 3.9617 12 1 5.3418 4.6769 4.4912 13 6 5.2666 6.8100 4.7817 14 7 5.6289 5.6538 2.6535 15 6 7.0226 5.1959 2.7312 16 6 7.6665 5.3139 1.3738 17 8 7.0274 5.7383 0.4342 18 7 8.9524 4.9481 1.2038 19 6 9.5384 5.0559 -0.0310 20 1 8.9695 5.4345 -0.8674 21 6 10.8642 4.6792 -0.2061 22 7 11.4260 4.7831 -1.3896 23 14 11.8483 4.0251 1.2407 24 1 11.6982 2.5496 1.3147 25 1 13.2817 4.3684 1.0601 26 1 11.3472 4.6373 2.4973 27 6 2.7184 3.3621 -0.6971 28 8 2.2906 2.1527 -1.0929 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.9047 2.7727 3.5713 35 1 3.3875 2.2034 2.7677 36 1 3.4708 2.8857 4.4096 37 1 3.0695 6.3364 3.3117 38 1 2.9754 5.2585 4.7251 39 1 4.7762 6.7355 5.7524 40 1 6.3431 6.9033 4.9250 41 1 4.8928 7.6866 4.2523 42 1 5.5771 6.5951 2.2936 43 1 7.5680 5.8115 3.4464 44 1 7.0456 4.1554 3.0553 45 1 9.4634 4.6084 1.9551 46 1 12.3515 4.5198 -1.5119 47 1 3.0086 4.1825 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331427972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:08 Heat of formation + Delta-G solvation = -60.644171 kcal Electronic energy + Delta-G solvation = -30048.220372 eV Core-core repulsion = 25846.399520 eV Total energy + Delta-G solvation = -4201.820852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.44056 -40.72885 -40.20718 -37.92008 -36.34762 -36.01364 -35.56662 -34.77086 -33.76666 -32.09883 -30.46052 -28.28273 -28.07323 -27.21016 -25.53209 -25.23299 -24.33019 -22.33571 -21.68445 -21.31000 -20.53134 -20.23621 -18.60226 -17.87545 -17.78556 -17.55229 -17.12420 -16.84922 -16.44144 -16.24419 -15.91176 -15.72679 -15.40679 -15.24959 -14.95366 -14.54974 -14.44314 -14.39987 -14.26638 -13.85500 -13.69161 -13.55764 -13.40726 -13.34230 -13.13791 -12.90968 -12.77104 -12.61108 -12.46728 -12.43514 -12.18486 -12.01587 -11.99333 -11.84788 -11.56143 -11.53048 -10.96575 -10.43990 -10.25859 -10.05394 -9.52618 -9.05206 -8.43031 -6.03804 0.12629 1.04694 1.27113 1.33172 1.42002 1.59889 1.95653 2.08180 2.20962 2.45096 2.75674 2.87887 3.12861 3.44666 3.70020 3.82197 3.96865 4.11726 4.23818 4.27407 4.27775 4.33033 4.38193 4.40239 4.51455 4.54163 4.56376 4.60635 4.66503 4.77712 4.87318 4.98266 4.99788 5.01779 5.05167 5.07400 5.25223 5.30215 5.37308 5.51729 5.76232 5.90667 6.16920 6.37922 6.47544 6.57196 6.59417 6.87248 7.32357 7.38495 7.97235 8.75143 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.003343 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.652624 B = 8374.305797 C =10103.743504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 C 0.192 3.808 4 N -0.463 5.463 5 C -0.083 4.083 6 C 0.597 3.403 7 O -0.549 6.549 8 N -0.591 5.591 9 C 0.093 3.907 10 C 0.129 3.871 11 C 0.067 3.933 12 H 0.093 0.907 13 C -0.173 4.173 14 N -0.669 5.669 15 C 0.066 3.934 16 C 0.447 3.553 17 O -0.608 6.608 18 N -0.593 5.593 19 C -0.328 4.328 20 H 0.051 0.949 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.233 1.233 27 C -0.001 4.001 28 O -0.201 6.201 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.340 0.660 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.845 -10.859 16.835 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 C -0.017 4.017 4 N -0.194 5.194 5 C -0.202 4.202 6 C 0.384 3.616 7 O -0.426 6.426 8 N -0.322 5.322 9 C -0.049 4.049 10 C 0.006 3.994 11 C -0.044 4.044 12 H 0.111 0.889 13 C -0.233 4.233 14 N -0.301 5.301 15 C -0.067 4.067 16 C 0.234 3.766 17 O -0.492 6.492 18 N -0.236 5.236 19 C -0.457 4.457 20 H 0.069 0.931 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.787 3.213 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.156 1.156 27 C -0.075 4.075 28 O -0.087 6.087 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.159 0.841 43 H 0.090 0.910 44 H 0.123 0.877 45 H 0.224 0.776 46 H 0.089 0.911 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -21.287 -10.847 16.228 28.882 hybrid contribution 1.655 1.126 -0.562 2.079 sum -19.632 -9.722 15.666 26.932 Atomic orbital electron populations 1.21764 0.91947 1.04327 1.02220 1.20420 0.97570 0.81387 1.06974 1.27502 0.98043 0.98235 0.77948 1.70956 1.16785 1.01957 1.29665 1.21937 1.10001 0.94950 0.93361 1.16844 0.76915 0.85321 0.82563 1.90812 1.49735 1.26787 1.75243 1.47363 1.69381 1.10823 1.04642 1.21948 1.01727 0.81922 0.99300 1.21690 0.94541 0.88763 0.94371 1.22154 0.94976 0.99179 0.88085 0.88925 1.22381 1.02124 0.97288 1.01486 1.60092 1.13232 1.31217 1.25594 1.21609 0.90284 1.02827 0.91957 1.21078 0.81804 0.81654 0.92029 1.90581 1.63581 1.50227 1.44785 1.42034 1.11390 1.60189 1.09938 1.18984 0.96233 1.42873 0.87632 0.93093 1.26131 0.97188 0.97232 1.00892 1.69811 1.14592 1.48430 1.24864 0.85335 0.78037 0.79623 0.78316 1.18095 1.19792 1.15587 1.25459 0.98794 0.87052 0.96155 1.84383 1.63476 1.22339 1.38527 0.88372 0.92567 0.92864 0.87104 0.85906 0.92060 0.91405 0.89467 0.91882 0.86268 0.89213 0.92592 0.93129 0.84143 0.90978 0.87713 0.77606 0.91126 0.75339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 71.98 0.71 -0.63 16 2 C -0.03 -0.30 6.56 29.85 0.20 -0.11 16 3 C 0.19 4.32 7.56 88.39 0.67 4.99 16 4 N -0.46 -12.16 8.10 -293.03 -2.37 -14.54 16 5 C -0.08 -2.67 6.60 40.41 0.27 -2.40 16 6 C 0.60 20.59 7.09 86.66 0.61 21.21 16 7 O -0.55 -23.04 15.38 -4.07 -0.06 -23.10 16 8 N -0.59 -15.37 2.78 -850.65 -2.36 -17.73 16 9 C 0.09 1.83 9.29 127.77 1.19 3.02 16 10 C 0.13 2.73 5.16 86.38 0.45 3.18 16 11 C 0.07 1.46 2.89 44.92 0.13 1.59 16 12 H 0.09 1.73 7.80 -2.39 -0.02 1.71 16 13 C -0.17 -3.02 9.16 71.98 0.66 -2.36 16 14 N -0.67 -22.28 3.94 -495.58 -1.95 -24.23 16 15 C 0.07 2.22 5.96 85.56 0.51 2.73 16 16 C 0.45 21.83 7.82 87.66 0.69 22.51 16 17 O -0.61 -36.67 15.78 -3.09 -0.05 -36.72 16 18 N -0.59 -29.66 5.09 -306.99 -1.56 -31.23 16 19 C -0.33 -20.12 10.16 84.04 0.85 -19.26 16 20 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 21 C -0.02 -0.93 5.50 84.92 0.47 -0.46 16 22 N -0.94 -58.11 13.96 21.66 0.30 -57.81 16 23 Si 0.97 40.09 27.74 68.60 1.90 41.99 16 24 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.23 -8.16 6.52 99.48 0.65 -7.52 16 27 C 0.00 -0.03 11.95 67.32 0.80 0.78 16 28 O -0.20 -5.34 10.73 0.42 0.00 -5.34 16 29 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 35 H 0.07 1.61 5.89 -2.38 -0.01 1.60 16 36 H 0.09 1.19 8.03 -2.39 -0.02 1.17 16 37 H 0.06 1.60 7.50 -2.38 -0.02 1.58 16 38 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 41 H 0.05 1.00 8.13 -2.38 -0.02 0.98 16 42 H 0.34 13.06 8.17 -89.69 -0.73 12.33 16 43 H 0.07 2.01 7.44 -2.39 -0.02 1.99 16 44 H 0.10 3.07 8.06 -2.38 -0.02 3.05 16 45 H 0.39 16.11 5.76 -92.71 -0.53 15.58 16 46 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 47 H 0.23 6.69 8.06 -2.91 -0.02 6.66 16 Total: -1.00 -89.37 392.85 1.73 -87.63 By element: Atomic # 1 Polarization: 46.61 SS G_CDS: -0.32 Total: 46.29 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 8.20 Total: 34.77 kcal Atomic # 7 Polarization: -137.59 SS G_CDS: -7.94 Total: -145.53 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -0.11 Total: -65.16 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.90 Total: 41.99 kcal Total: -89.37 1.73 -87.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331427972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.988 kcal (2) G-P(sol) polarization free energy of solvation -89.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds