Wall clock time and date at job start Tue Mar 31 2020 21:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50691 * 120.00070 * 2 1 4 4 N 1.46496 * 109.47388 * 126.72639 * 3 2 1 5 5 C 1.36451 * 127.13925 * 83.90360 * 4 3 2 6 6 N 1.38588 * 126.47162 * 0.04009 * 5 4 3 7 7 C 1.48555 * 111.00159 * 179.71591 * 6 5 4 8 8 C 1.54383 * 104.59216 * 200.95661 * 7 6 5 9 9 H 1.08993 * 118.15539 * 244.14117 * 8 7 6 10 10 C 1.54258 * 105.06247 * 23.85220 * 8 7 6 11 11 H 1.09002 * 121.78713 * 222.12899 * 10 8 7 12 12 C 1.52144 * 110.66887 * 64.21769 * 6 5 4 13 13 C 1.52995 * 59.72917 * 114.09341 * 10 8 7 14 14 F 1.39901 * 117.44602 * 107.64572 * 13 10 8 15 15 F 1.39900 * 117.44176 * 252.39770 * 13 10 8 16 16 N 1.31218 * 107.05967 * 179.77509 * 5 4 3 17 17 N 1.28523 * 109.85574 * 0.22609 * 16 5 4 18 18 C 1.30304 * 110.05768 * 359.97438 * 17 16 5 19 19 C 1.50695 * 126.34989 * 179.97438 * 18 17 16 20 20 C 1.53008 * 109.47076 * 357.09961 * 19 18 17 21 21 C 1.53006 * 109.46982 * 117.09607 * 19 18 17 22 22 C 1.50696 * 109.47359 * 237.09611 * 19 18 17 23 23 H 1.07999 * 119.99856 * 1.67513 * 22 19 18 24 24 C 1.37877 * 119.99957 * 181.66652 * 22 19 18 25 25 N 1.31514 * 120.00386 * 7.01950 * 24 22 19 26 26 Si 1.86808 * 119.99736 * 187.01938 * 24 22 19 27 27 H 1.48498 * 109.47009 * 95.07419 * 26 24 22 28 28 H 1.48495 * 109.46896 * 215.07356 * 26 24 22 29 29 H 1.48498 * 109.47030 * 335.06999 * 26 24 22 30 30 H 1.07997 * 120.00110 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.00188 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99592 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47378 * 6.72599 * 3 2 1 34 34 H 1.09008 * 109.47387 * 246.72823 * 3 2 1 35 35 H 1.08998 * 110.41859 * 82.17765 * 7 6 5 36 36 H 1.08998 * 110.41023 * 319.72927 * 7 6 5 37 37 H 1.09004 * 110.22200 * 41.39256 * 12 6 5 38 38 H 1.08998 * 112.22528 * 277.82533 * 12 6 5 39 39 H 1.09000 * 109.47112 * 63.83157 * 20 19 18 40 40 H 1.09000 * 109.46811 * 183.83173 * 20 19 18 41 41 H 1.08998 * 109.46585 * 303.83211 * 20 19 18 42 42 H 1.09000 * 109.46770 * 68.65639 * 21 19 18 43 43 H 1.08994 * 109.46856 * 188.65419 * 21 19 18 44 44 H 1.08995 * 109.47103 * 308.65614 * 21 19 18 45 45 H 0.96990 * 120.00216 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0229 1.3150 1.1070 5 6 4.2787 0.7813 1.1136 6 7 4.8984 0.1201 0.0650 7 6 6.2678 -0.3133 0.4439 8 6 6.9969 -0.5190 -0.9013 9 1 7.3299 -1.5248 -1.1573 10 6 6.2353 0.3660 -1.9094 11 1 6.0013 0.0191 -2.9159 12 6 5.1099 1.0601 -1.1125 13 6 7.6848 0.6887 -1.5410 14 9 8.6667 0.4357 -2.5049 15 9 7.9104 1.8058 -0.7296 16 7 4.7911 1.0173 2.2983 17 7 3.9409 1.6530 3.0229 18 6 2.8449 1.8590 2.3488 19 6 1.6115 2.5688 2.8446 20 6 1.8039 2.9620 4.3107 21 6 1.3751 3.8265 2.0060 22 6 0.4213 1.6525 2.7223 23 1 0.5502 0.6467 2.3506 24 6 -0.8320 2.0982 3.0850 25 7 -1.0136 3.3606 3.4058 26 14 -2.2720 0.9088 3.1208 27 1 -2.4487 0.3869 4.4998 28 1 -3.5077 1.6148 2.6966 29 1 -2.0044 -0.2205 2.1945 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3613 2.1300 0.1204 34 1 2.5968 1.4167 -0.9441 35 1 6.2298 -1.2485 1.0025 36 1 6.7630 0.4608 1.0301 37 1 5.4406 2.0371 -0.7599 38 1 4.2149 1.1596 -1.7265 39 1 2.6220 3.6779 4.3904 40 1 0.8871 3.4143 4.6888 41 1 2.0398 2.0740 4.8970 42 1 1.0866 3.5400 0.9947 43 1 0.5792 4.4193 2.4566 44 1 2.2911 4.4162 1.9693 45 1 -1.8952 3.6740 3.6614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340553815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:33 Heat of formation + Delta-G solvation = 51.420216 kcal Electronic energy + Delta-G solvation = -30938.884162 eV Core-core repulsion = 26630.835271 eV Total energy + Delta-G solvation = -4308.048891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.82115 -48.50292 -43.89024 -40.53080 -37.77625 -36.77369 -35.11355 -33.66426 -33.03002 -30.07914 -29.58765 -27.97882 -27.54335 -27.13321 -25.74204 -23.81693 -22.51291 -21.93493 -21.71582 -20.80269 -20.55475 -19.00870 -18.52431 -18.09375 -17.75561 -17.12438 -17.03031 -16.82905 -16.71776 -16.01869 -15.45636 -15.29495 -15.14777 -14.90768 -14.84504 -14.68833 -14.31226 -14.08374 -14.02153 -13.63494 -13.50078 -13.33207 -13.07419 -12.88076 -12.87319 -12.68814 -12.49601 -12.34935 -12.32580 -12.21361 -12.08226 -11.79696 -11.62812 -11.46879 -11.00227 -10.98163 -10.81879 -10.63111 -10.38570 -10.16936 -9.28248 -8.00308 -6.13872 0.87078 1.09492 1.44982 1.50948 1.57320 1.62465 1.80152 1.93770 1.99907 2.49000 2.76427 2.91177 2.94014 3.25811 3.47229 3.56690 3.76863 3.87195 3.93881 4.03505 4.04962 4.09810 4.20779 4.29655 4.45193 4.59576 4.65755 4.67482 4.75798 4.78706 4.84551 4.92763 4.96347 5.02686 5.09555 5.19151 5.29175 5.36994 5.49709 5.57986 5.71759 5.74711 5.85839 5.97022 6.11994 6.29253 6.34527 6.86517 7.52772 7.92070 9.00430 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.003495 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.400430 B = 8010.064502 C = 8638.726447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.179 4.179 3 C 0.139 3.861 4 N -0.461 5.461 5 C 0.324 3.676 6 N -0.414 5.414 7 C 0.073 3.927 8 C -0.137 4.137 9 H 0.184 0.816 10 C -0.136 4.136 11 H 0.186 0.814 12 C 0.052 3.948 13 C 0.203 3.797 14 F -0.154 7.154 15 F -0.178 7.178 16 N -0.357 5.357 17 N -0.346 5.346 18 C 0.234 3.766 19 C 0.140 3.860 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.509 4.509 23 H 0.061 0.939 24 C 0.042 3.958 25 N -0.900 5.900 26 Si 0.931 3.069 27 H -0.294 1.294 28 H -0.285 1.285 29 H -0.253 1.253 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.134 0.866 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.010 0.990 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -7.031 -15.896 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.198 4.198 3 C 0.018 3.982 4 N -0.153 5.153 5 C -0.034 4.034 6 N -0.139 5.139 7 C -0.054 4.054 8 C -0.156 4.156 9 H 0.201 0.799 10 C -0.155 4.155 11 H 0.204 0.796 12 C -0.073 4.073 13 C 0.166 3.834 14 F -0.134 7.134 15 F -0.159 7.159 16 N -0.201 5.201 17 N -0.184 5.184 18 C -0.035 4.035 19 C 0.137 3.863 20 C -0.162 4.162 21 C -0.175 4.175 22 C -0.548 4.548 23 H 0.080 0.920 24 C -0.158 4.158 25 N -0.538 5.538 26 Si 0.758 3.242 27 H -0.221 1.221 28 H -0.211 1.211 29 H -0.177 1.177 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.040 0.960 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.029 0.971 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.835 -7.314 -14.853 19.257 hybrid contribution -0.990 0.365 -0.072 1.057 sum 8.845 -6.949 -14.926 18.689 Atomic orbital electron populations 1.23967 0.95721 1.02456 0.95756 1.22755 0.96052 0.97122 1.03882 1.21277 0.90891 0.98815 0.87204 1.46196 1.12270 1.43237 1.13561 1.22830 0.85814 0.99595 0.95118 1.63503 1.18902 1.29601 1.01895 1.22545 0.84558 1.03047 0.95287 1.24852 0.98474 0.98008 0.94301 0.79892 1.24793 0.87443 1.00216 1.03082 0.79642 1.23608 0.99739 0.93559 0.90432 1.20425 0.87638 0.87216 0.88160 1.93038 1.63973 1.93782 1.62645 1.93010 1.95561 1.54426 1.72869 1.74323 1.24875 1.18659 1.02245 1.73890 1.00670 1.17593 1.26208 1.25845 0.98305 0.97766 0.81605 1.16883 0.84700 0.92182 0.92507 1.21435 0.99529 0.98287 0.96952 1.21815 0.99349 0.97396 0.98919 1.21102 0.90789 0.98590 1.44309 0.92040 1.25286 1.00030 0.95826 0.94676 1.69931 1.23232 1.14553 1.46069 0.85956 0.79774 0.80433 0.78077 1.22143 1.21110 1.17654 0.88379 0.87458 0.87061 0.87888 0.86629 0.86727 0.92441 0.93081 0.84864 0.95992 0.91599 0.96023 0.93888 0.89827 0.97084 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 12.73 67.78 0.86 -3.22 16 2 C -0.18 -5.18 8.84 25.64 0.23 -4.95 16 3 C 0.14 4.13 5.74 85.63 0.49 4.62 16 4 N -0.46 -17.11 2.79 -518.92 -1.45 -18.56 16 5 C 0.32 11.64 7.03 260.11 1.83 13.47 16 6 N -0.41 -10.72 5.48 -682.23 -3.74 -14.46 16 7 C 0.07 1.68 5.81 86.45 0.50 2.18 16 8 C -0.14 -2.06 7.11 -9.90 -0.07 -2.13 16 9 H 0.18 1.55 8.14 -2.39 -0.02 1.53 16 10 C -0.14 -1.88 7.02 -9.90 -0.07 -1.95 16 11 H 0.19 1.24 8.14 -2.39 -0.02 1.22 16 12 C 0.05 1.03 5.80 85.73 0.50 1.52 16 13 C 0.20 3.74 5.12 30.59 0.16 3.90 16 14 F -0.15 -2.84 17.60 44.97 0.79 -2.05 16 15 F -0.18 -4.56 16.18 44.97 0.73 -3.84 16 16 N -0.36 -15.51 10.98 -58.00 -0.64 -16.15 16 17 N -0.35 -16.70 11.50 -49.54 -0.57 -17.27 16 18 C 0.23 10.56 6.27 137.63 0.86 11.42 16 19 C 0.14 6.56 0.48 -53.67 -0.03 6.53 16 20 C -0.10 -5.09 7.81 71.98 0.56 -4.52 16 21 C -0.12 -5.13 7.88 71.98 0.57 -4.56 16 22 C -0.51 -24.29 6.54 25.60 0.17 -24.13 16 23 H 0.06 2.95 5.42 -2.91 -0.02 2.94 16 24 C 0.04 2.04 5.10 84.65 0.43 2.47 16 25 N -0.90 -45.09 9.53 21.45 0.20 -44.89 16 26 Si 0.93 38.93 29.54 68.60 2.03 40.96 16 27 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 28 H -0.29 -11.81 7.11 99.48 0.71 -11.11 16 29 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 30 H 0.10 3.02 7.85 -2.91 -0.02 3.00 16 31 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.10 3.37 4.64 -2.39 -0.01 3.36 16 34 H 0.12 2.55 5.67 -2.38 -0.01 2.54 16 35 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 1.66 6.94 -2.39 -0.02 1.65 16 37 H 0.05 1.25 7.48 -2.38 -0.02 1.23 16 38 H 0.13 1.96 6.29 -2.39 -0.02 1.95 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 3.37 6.40 -2.39 -0.02 3.35 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.04 1.74 5.60 -2.39 -0.01 1.72 16 43 H 0.08 4.00 6.04 -2.39 -0.01 3.99 16 44 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 45 H 0.26 12.71 8.31 -92.72 -0.77 11.94 16 Total: -1.00 -62.21 359.77 5.38 -56.84 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.03 Total: 18.76 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.99 Total: 0.67 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -6.19 Total: -111.33 kcal Atomic # 9 Polarization: -7.41 SS G_CDS: 1.52 Total: -5.89 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -62.21 5.38 -56.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340553815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.257 kcal (2) G-P(sol) polarization free energy of solvation -62.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds