Wall clock time and date at job start Tue Mar 31 2020 21:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99817 * 2 1 4 4 C 1.50693 * 119.99822 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.47270 * 94.65199 * 4 2 1 6 6 C 1.36743 * 127.13398 * 264.55929 * 5 4 2 7 7 C 1.50699 * 126.34506 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47715 * 270.49879 * 7 6 5 9 9 C 1.50693 * 109.46981 * 176.54887 * 8 7 6 10 10 H 1.08005 * 120.00469 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99743 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99962 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47621 * 270.00262 * 13 11 9 15 15 H 1.48503 * 109.46922 * 150.00157 * 13 11 9 16 16 H 1.48501 * 109.47087 * 30.00333 * 13 11 9 17 17 N 1.30295 * 107.30306 * 179.75627 * 6 5 4 18 18 N 1.28521 * 110.05361 * 0.22883 * 17 6 5 19 19 C 1.31211 * 109.86581 * 0.02562 * 18 17 6 20 20 N 1.38582 * 126.47771 * 179.97438 * 19 18 17 21 21 C 1.48560 * 110.99623 * 36.23146 * 20 19 18 22 22 C 1.54378 * 104.59325 * 200.95771 * 21 20 19 23 23 H 1.09005 * 117.60849 * 244.71742 * 22 21 20 24 24 C 1.54264 * 105.06125 * 23.85066 * 22 21 20 25 25 H 1.08991 * 121.79252 * 222.12365 * 24 22 21 26 26 C 1.48558 * 111.00092 * 280.81033 * 20 19 18 27 27 C 1.53005 * 59.72907 * 114.09332 * 24 22 21 28 28 F 1.39898 * 117.44734 * 252.35874 * 27 24 22 29 29 F 1.39897 * 117.44389 * 107.64367 * 27 24 22 30 30 H 1.07999 * 120.00053 * 5.91596 * 1 2 3 31 31 H 1.08002 * 119.99808 * 185.91523 * 1 2 3 32 32 H 1.09004 * 109.47152 * 182.30504 * 3 2 1 33 33 H 1.09008 * 109.47376 * 302.30589 * 3 2 1 34 34 H 1.09001 * 109.47617 * 62.30695 * 3 2 1 35 35 H 1.09000 * 109.47446 * 334.64754 * 4 2 1 36 36 H 1.09006 * 109.47222 * 214.64530 * 4 2 1 37 37 H 1.09005 * 109.46606 * 150.49717 * 7 6 5 38 38 H 1.08997 * 109.47392 * 30.50573 * 7 6 5 39 39 H 1.09002 * 109.46795 * 56.54818 * 8 7 6 40 40 H 1.08997 * 109.46718 * 296.55004 * 8 7 6 41 41 H 0.96996 * 119.99684 * 359.97438 * 12 11 9 42 42 H 1.09003 * 110.41366 * 319.73606 * 21 20 19 43 43 H 1.09004 * 110.41241 * 82.06295 * 21 20 19 44 44 H 1.08998 * 110.41206 * 277.81484 * 26 20 19 45 45 H 1.09002 * 110.41178 * 40.26269 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4047 -1.6726 -1.3759 6 6 1.7064 -2.5064 -2.2050 7 6 0.4262 -3.2289 -1.8733 8 6 0.7538 -4.5920 -1.2603 9 6 -0.5236 -5.2787 -0.8510 10 1 -1.4741 -4.7918 -1.0122 11 6 -0.4790 -6.5290 -0.2715 12 7 0.6785 -7.1220 -0.0756 13 14 -2.0623 -7.3800 0.2366 14 1 -2.3928 -7.0154 1.6377 15 1 -1.8878 -8.8513 0.1360 16 1 -3.1652 -6.9499 -0.6600 17 7 2.3501 -2.5557 -3.3367 18 7 3.4019 -1.8194 -3.2780 19 6 3.4867 -1.2566 -2.0957 20 7 4.4838 -0.3975 -1.6618 21 6 4.9395 0.4888 -2.7636 22 6 6.3398 0.9674 -2.3240 23 1 6.4705 2.0310 -2.1243 24 6 6.8422 -0.1113 -1.3423 25 1 7.3593 0.1488 -0.4188 26 6 5.7031 -1.1510 -1.2714 27 6 7.5457 0.0975 -2.6849 28 9 7.3634 -0.8815 -3.6675 29 9 8.8066 0.7031 -2.6647 30 1 -0.5400 0.9303 -0.0964 31 1 -0.5400 -0.9304 0.0964 32 1 3.1344 1.1064 -0.0413 33 1 1.7695 1.8944 -0.8686 34 1 1.8316 1.8586 0.9099 35 1 1.4409 -2.0839 0.4410 36 1 2.9774 -1.1968 0.5848 37 1 -0.1573 -3.3703 -2.7831 38 1 -0.1498 -2.6389 -1.1604 39 1 1.3886 -4.4536 -0.3851 40 1 1.2763 -5.2045 -1.9950 41 1 1.5006 -6.6799 -0.3391 42 1 5.0043 -0.0688 -3.6980 43 1 4.2633 1.3366 -2.8739 44 1 5.6031 -1.5367 -0.2569 45 1 5.8875 -1.9652 -1.9723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341979881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:12 Heat of formation + Delta-G solvation = 42.097325 kcal Electronic energy + Delta-G solvation = -29951.687556 eV Core-core repulsion = 25643.234394 eV Total energy + Delta-G solvation = -4308.453162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.03901 -47.70051 -42.82140 -39.89941 -36.88322 -34.92217 -34.16864 -33.24128 -31.60004 -29.17872 -28.49637 -27.60900 -26.93835 -25.17771 -24.68363 -22.20583 -21.76027 -21.23026 -20.84127 -20.25264 -18.81484 -18.27144 -17.48335 -16.92489 -16.82992 -16.36739 -16.26426 -15.90458 -14.89434 -14.68926 -14.44303 -14.34567 -14.08171 -14.03519 -13.86326 -13.76936 -13.50456 -13.36640 -13.21108 -12.97663 -12.61280 -12.33554 -12.15311 -12.11027 -11.93240 -11.67913 -11.57554 -11.33489 -11.16991 -10.92093 -10.52689 -10.38925 -10.31517 -10.21207 -10.13696 -9.87882 -9.33744 -9.22930 -8.77086 -8.43555 -8.41376 -6.44844 -4.16177 1.68245 1.88451 2.36034 2.53100 2.73208 3.09012 3.38641 3.43227 3.58666 3.60172 3.66091 3.70308 4.20850 4.39584 4.46929 4.54218 4.57127 4.59435 4.76561 4.87420 5.02057 5.05271 5.22994 5.28756 5.32979 5.35030 5.37714 5.41573 5.44419 5.49342 5.54934 5.68787 5.75708 5.85487 5.95581 6.15888 6.17196 6.25661 6.39444 6.45981 6.63497 6.72699 7.19256 7.24236 7.35456 8.04742 8.35639 8.76952 8.98842 9.56860 10.95490 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.002964 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.438900 B = 9444.571851 C =10439.434713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.151 4.151 3 C -0.115 4.115 4 C 0.147 3.853 5 N -0.455 5.455 6 C 0.219 3.781 7 C -0.026 4.026 8 C 0.019 3.981 9 C -0.605 4.605 10 H 0.053 0.947 11 C 0.018 3.982 12 N -0.909 5.909 13 Si 1.072 2.928 14 H -0.288 1.288 15 H -0.284 1.284 16 H -0.287 1.287 17 N -0.295 5.295 18 N -0.309 5.309 19 C 0.312 3.688 20 N -0.427 5.427 21 C 0.071 3.929 22 C -0.157 4.157 23 H 0.149 0.851 24 C -0.156 4.156 25 H 0.149 0.851 26 C 0.065 3.935 27 C 0.226 3.774 28 F -0.152 7.152 29 F -0.154 7.154 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.004 0.996 40 H 0.017 0.983 41 H 0.269 0.731 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 20.757 1.703 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.172 4.172 4 C 0.024 3.976 5 N -0.147 5.147 6 C -0.048 4.048 7 C -0.065 4.065 8 C -0.019 4.019 9 C -0.643 4.643 10 H 0.071 0.929 11 C -0.187 4.187 12 N -0.544 5.544 13 Si 0.900 3.100 14 H -0.214 1.214 15 H -0.209 1.209 16 H -0.213 1.213 17 N -0.134 5.134 18 N -0.153 5.153 19 C -0.045 4.045 20 N -0.152 5.152 21 C -0.056 4.056 22 C -0.176 4.176 23 H 0.166 0.834 24 C -0.176 4.176 25 H 0.167 0.833 26 C -0.062 4.062 27 C 0.188 3.812 28 F -0.133 7.133 29 F -0.134 7.134 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.022 0.978 40 H 0.035 0.965 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.345 19.278 1.391 21.469 hybrid contribution 0.893 1.394 -0.030 1.656 sum 10.238 20.672 1.362 23.108 Atomic orbital electron populations 1.23973 0.95267 1.02802 0.97958 1.21815 0.95473 0.95299 1.02571 1.20826 1.01184 0.93843 1.01370 1.20832 1.01531 0.95768 0.79437 1.46276 1.18732 1.35881 1.13846 1.25673 0.98685 0.93684 0.86744 1.20341 0.87108 0.96811 1.02276 1.19196 0.97975 0.89797 0.94946 1.21971 0.92504 1.04958 1.44913 0.92865 1.25866 1.03530 0.94925 0.94362 1.70756 0.98396 1.40522 1.44762 0.83502 0.73981 0.76311 0.76228 1.21441 1.20919 1.21317 1.74071 1.02760 1.17342 1.19257 1.74471 1.14930 1.09653 1.16216 1.22174 0.91825 1.00503 0.89950 1.62288 1.05283 1.14284 1.33332 1.22638 0.92078 0.97177 0.93672 1.24748 0.92223 0.99389 1.01289 0.83375 1.24723 0.98936 0.99283 0.94655 0.83349 1.22757 0.85327 0.94555 1.03594 1.20083 0.80671 0.90127 0.90280 1.93075 1.94754 1.62130 1.63319 1.93043 1.41043 1.82672 1.96660 0.87869 0.87499 0.90542 0.92180 0.91741 0.87476 0.88419 0.89100 0.90892 0.97771 0.96478 0.92053 0.89589 0.87878 0.87805 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 13.94 29.01 0.40 -1.39 16 2 C -0.15 -1.70 5.63 -101.07 -0.57 -2.27 16 3 C -0.12 -1.07 10.05 36.00 0.36 -0.70 16 4 C 0.15 1.91 6.04 -5.19 -0.03 1.87 16 5 N -0.46 -7.32 2.79 -115.36 -0.32 -7.64 16 6 C 0.22 4.23 7.32 -154.01 -1.13 3.10 16 7 C -0.03 -0.51 5.31 -27.88 -0.15 -0.66 16 8 C 0.02 0.47 4.27 -27.89 -0.12 0.35 16 9 C -0.61 -16.39 9.11 -34.44 -0.31 -16.70 16 10 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 11 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 12 N -0.91 -27.30 13.65 55.43 0.76 -26.54 16 13 Si 1.07 24.52 29.90 -169.99 -5.08 19.43 16 14 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 17 N -0.29 -6.22 12.18 32.99 0.40 -5.82 16 18 N -0.31 -5.88 11.25 30.31 0.34 -5.54 16 19 C 0.31 4.90 6.68 -318.88 -2.13 2.77 16 20 N -0.43 -4.95 4.74 -170.09 -0.81 -5.76 16 21 C 0.07 0.73 6.09 -2.18 -0.01 0.72 16 22 C -0.16 -1.21 7.11 -89.23 -0.63 -1.85 16 23 H 0.15 0.77 8.14 -51.93 -0.42 0.34 16 24 C -0.16 -1.24 7.11 -89.23 -0.63 -1.87 16 25 H 0.15 0.81 8.14 -51.93 -0.42 0.39 16 26 C 0.06 0.68 6.13 -2.18 -0.01 0.67 16 27 C 0.23 2.18 5.12 -26.72 -0.14 2.05 16 28 F -0.15 -1.92 16.22 2.25 0.04 -1.89 16 29 F -0.15 -1.53 17.60 2.25 0.04 -1.49 16 30 H 0.10 0.97 8.05 -52.49 -0.42 0.55 16 31 H 0.11 1.27 7.05 -52.49 -0.37 0.90 16 32 H 0.08 0.70 7.32 -51.93 -0.38 0.32 16 33 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.11 1.50 7.45 -51.93 -0.39 1.11 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.07 1.32 6.88 -51.93 -0.36 0.96 16 39 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 40 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 41 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 42 H 0.09 1.09 6.80 -51.93 -0.35 0.74 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.96 7.48 -51.93 -0.39 0.58 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -32.59 382.18 -10.45 -43.04 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.37 Total: -0.04 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -5.20 Total: -13.52 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.37 Total: -51.30 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.59 -10.45 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341979881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.142 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds