Wall clock time and date at job start Tue Mar 31 2020 21:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99817 * 2 1 4 4 C 1.50693 * 119.99822 * 179.97438 * 2 1 3 5 5 N 1.46504 * 109.47270 * 94.65199 * 4 2 1 6 6 C 1.36743 * 127.13398 * 264.55929 * 5 4 2 7 7 C 1.50699 * 126.34506 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47715 * 270.49879 * 7 6 5 9 9 C 1.50693 * 109.46981 * 176.54887 * 8 7 6 10 10 H 1.08005 * 120.00469 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99743 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99835 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99962 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47621 * 270.00262 * 13 11 9 15 15 H 1.48503 * 109.46922 * 150.00157 * 13 11 9 16 16 H 1.48501 * 109.47087 * 30.00333 * 13 11 9 17 17 N 1.30295 * 107.30306 * 179.75627 * 6 5 4 18 18 N 1.28521 * 110.05361 * 0.22883 * 17 6 5 19 19 C 1.31211 * 109.86581 * 0.02562 * 18 17 6 20 20 N 1.38582 * 126.47771 * 179.97438 * 19 18 17 21 21 C 1.48560 * 110.99623 * 36.23146 * 20 19 18 22 22 C 1.54378 * 104.59325 * 200.95771 * 21 20 19 23 23 H 1.09005 * 117.60849 * 244.71742 * 22 21 20 24 24 C 1.54264 * 105.06125 * 23.85066 * 22 21 20 25 25 H 1.08991 * 121.79252 * 222.12365 * 24 22 21 26 26 C 1.48558 * 111.00092 * 280.81033 * 20 19 18 27 27 C 1.53005 * 59.72907 * 114.09332 * 24 22 21 28 28 F 1.39898 * 117.44734 * 252.35874 * 27 24 22 29 29 F 1.39897 * 117.44389 * 107.64367 * 27 24 22 30 30 H 1.07999 * 120.00053 * 5.91596 * 1 2 3 31 31 H 1.08002 * 119.99808 * 185.91523 * 1 2 3 32 32 H 1.09004 * 109.47152 * 182.30504 * 3 2 1 33 33 H 1.09008 * 109.47376 * 302.30589 * 3 2 1 34 34 H 1.09001 * 109.47617 * 62.30695 * 3 2 1 35 35 H 1.09000 * 109.47446 * 334.64754 * 4 2 1 36 36 H 1.09006 * 109.47222 * 214.64530 * 4 2 1 37 37 H 1.09005 * 109.46606 * 150.49717 * 7 6 5 38 38 H 1.08997 * 109.47392 * 30.50573 * 7 6 5 39 39 H 1.09002 * 109.46795 * 56.54818 * 8 7 6 40 40 H 1.08997 * 109.46718 * 296.55004 * 8 7 6 41 41 H 0.96996 * 119.99684 * 359.97438 * 12 11 9 42 42 H 1.09003 * 110.41366 * 319.73606 * 21 20 19 43 43 H 1.09004 * 110.41241 * 82.06295 * 21 20 19 44 44 H 1.08998 * 110.41206 * 277.81484 * 26 20 19 45 45 H 1.09002 * 110.41178 * 40.26269 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4047 -1.6726 -1.3759 6 6 1.7064 -2.5064 -2.2050 7 6 0.4262 -3.2289 -1.8733 8 6 0.7538 -4.5920 -1.2603 9 6 -0.5236 -5.2787 -0.8510 10 1 -1.4741 -4.7918 -1.0122 11 6 -0.4790 -6.5290 -0.2715 12 7 0.6785 -7.1220 -0.0756 13 14 -2.0623 -7.3800 0.2366 14 1 -2.3928 -7.0154 1.6377 15 1 -1.8878 -8.8513 0.1360 16 1 -3.1652 -6.9499 -0.6600 17 7 2.3501 -2.5557 -3.3367 18 7 3.4019 -1.8194 -3.2780 19 6 3.4867 -1.2566 -2.0957 20 7 4.4838 -0.3975 -1.6618 21 6 4.9395 0.4888 -2.7636 22 6 6.3398 0.9674 -2.3240 23 1 6.4705 2.0310 -2.1243 24 6 6.8422 -0.1113 -1.3423 25 1 7.3593 0.1488 -0.4188 26 6 5.7031 -1.1510 -1.2714 27 6 7.5457 0.0975 -2.6849 28 9 7.3634 -0.8815 -3.6675 29 9 8.8066 0.7031 -2.6647 30 1 -0.5400 0.9303 -0.0964 31 1 -0.5400 -0.9304 0.0964 32 1 3.1344 1.1064 -0.0413 33 1 1.7695 1.8944 -0.8686 34 1 1.8316 1.8586 0.9099 35 1 1.4409 -2.0839 0.4410 36 1 2.9774 -1.1968 0.5848 37 1 -0.1573 -3.3703 -2.7831 38 1 -0.1498 -2.6389 -1.1604 39 1 1.3886 -4.4536 -0.3851 40 1 1.2763 -5.2045 -1.9950 41 1 1.5006 -6.6799 -0.3391 42 1 5.0043 -0.0688 -3.6980 43 1 4.2633 1.3366 -2.8739 44 1 5.6031 -1.5367 -0.2569 45 1 5.8875 -1.9652 -1.9723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341979881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:11 Heat of formation + Delta-G solvation = 25.941428 kcal Electronic energy + Delta-G solvation = -29952.388128 eV Core-core repulsion = 25643.234394 eV Total energy + Delta-G solvation = -4309.153734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.82736 -48.51003 -44.19768 -40.77144 -37.93928 -36.55042 -35.43591 -34.53732 -33.32945 -30.15732 -29.90850 -28.47955 -27.97318 -26.82989 -25.92543 -24.08543 -22.68886 -22.11349 -21.96421 -21.54454 -19.80869 -19.01632 -18.98216 -18.50468 -17.74723 -17.47929 -17.31222 -16.97531 -16.06546 -15.71574 -15.63619 -15.51942 -15.39110 -15.17683 -15.08178 -14.96952 -14.70343 -14.39673 -14.15708 -13.98069 -13.84538 -13.66544 -13.41384 -13.06785 -12.93084 -12.80037 -12.78107 -12.64702 -12.42729 -12.29722 -12.19768 -12.02780 -11.90549 -11.66035 -11.13587 -11.00803 -10.83616 -10.56778 -10.42509 -10.19337 -9.86869 -8.70525 -6.42705 0.50046 0.72973 1.43077 1.54543 1.56796 1.64120 1.81307 1.83845 1.88192 2.56724 2.66327 2.88862 2.93243 3.15240 3.31446 3.45676 3.51520 3.64644 3.68909 3.83430 3.90080 3.95035 4.06654 4.18064 4.34264 4.42088 4.44430 4.48602 4.53663 4.61576 4.65310 4.75011 4.75263 4.82726 4.86545 4.92637 4.98234 5.05872 5.16579 5.17939 5.31706 5.33692 5.54006 5.78782 5.89772 6.00173 6.15259 6.51006 7.40390 7.55493 8.69606 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.002964 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.438900 B = 9444.571851 C =10439.434713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.156 4.156 3 C -0.109 4.109 4 C 0.140 3.860 5 N -0.450 5.450 6 C 0.203 3.797 7 C -0.009 4.009 8 C 0.029 3.971 9 C -0.613 4.613 10 H 0.064 0.936 11 C -0.037 4.037 12 N -0.937 5.937 13 Si 1.121 2.879 14 H -0.268 1.268 15 H -0.288 1.288 16 H -0.266 1.266 17 N -0.330 5.330 18 N -0.344 5.344 19 C 0.336 3.664 20 N -0.412 5.412 21 C 0.064 3.936 22 C -0.131 4.131 23 H 0.188 0.812 24 C -0.136 4.136 25 H 0.186 0.814 26 C 0.058 3.942 27 C 0.200 3.800 28 F -0.178 7.178 29 F -0.155 7.155 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.094 0.906 39 H -0.009 1.009 40 H -0.021 1.021 41 H 0.252 0.748 42 H 0.057 0.943 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 23.648 3.609 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.165 4.165 4 C 0.019 3.981 5 N -0.141 5.141 6 C -0.066 4.066 7 C -0.048 4.048 8 C -0.010 4.010 9 C -0.651 4.651 10 H 0.082 0.918 11 C -0.234 4.234 12 N -0.574 5.574 13 Si 0.941 3.059 14 H -0.193 1.193 15 H -0.214 1.214 16 H -0.190 1.190 17 N -0.170 5.170 18 N -0.188 5.188 19 C -0.021 4.021 20 N -0.137 5.137 21 C -0.062 4.062 22 C -0.150 4.150 23 H 0.205 0.795 24 C -0.155 4.155 25 H 0.203 0.797 26 C -0.069 4.069 27 C 0.163 3.837 28 F -0.159 7.159 29 F -0.135 7.135 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.010 0.990 40 H -0.002 1.002 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.961 22.205 3.298 24.171 hybrid contribution 1.100 0.533 -0.640 1.380 sum 10.061 22.739 2.658 25.007 Atomic orbital electron populations 1.24103 0.95378 1.03208 0.97455 1.21894 0.95583 0.95233 1.02928 1.20812 1.00893 0.92535 1.02308 1.21094 1.02703 0.96489 0.77790 1.46409 1.18193 1.34950 1.14549 1.25321 0.98881 0.95060 0.87339 1.20016 0.87933 0.94701 1.02179 1.18995 0.96624 0.91797 0.93545 1.22392 0.93613 1.05171 1.43936 0.91795 1.27464 1.05716 0.96213 0.94051 1.70901 0.98667 1.41038 1.46821 0.82897 0.70691 0.74930 0.77353 1.19311 1.21412 1.19025 1.73963 1.03814 1.18484 1.20747 1.74407 1.14927 1.11000 1.18439 1.22577 0.91832 0.98922 0.88803 1.62578 1.04822 1.13171 1.33160 1.22747 0.94340 0.97030 0.92104 1.24817 0.89504 1.01038 0.99681 0.79482 1.24778 0.97525 0.97932 0.95302 0.79686 1.22838 0.85865 0.94657 1.03528 1.20479 0.81401 0.90913 0.90932 1.93023 1.94923 1.63394 1.64567 1.93036 1.41201 1.82613 1.96680 0.85844 0.88791 0.90302 0.92089 0.89932 0.88924 0.86299 0.89493 0.88725 0.99047 1.00225 0.93827 0.92493 0.85950 0.86134 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 13.94 67.78 0.94 -2.35 16 2 C -0.16 -3.16 5.63 -16.49 -0.09 -3.26 16 3 C -0.11 -1.63 10.05 71.23 0.72 -0.91 16 4 C 0.14 3.48 6.04 85.63 0.52 4.00 16 5 N -0.45 -14.41 2.79 -518.90 -1.45 -15.86 16 6 C 0.20 8.05 7.32 137.64 1.01 9.06 16 7 C -0.01 -0.35 5.31 29.85 0.16 -0.19 16 8 C 0.03 1.47 4.27 29.85 0.13 1.60 16 9 C -0.61 -33.59 9.11 25.60 0.23 -33.36 16 10 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 11 C -0.04 -2.09 5.46 84.66 0.46 -1.63 16 12 N -0.94 -57.85 13.65 21.45 0.29 -57.56 16 13 Si 1.12 48.76 29.90 68.60 2.05 50.81 16 14 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 17 N -0.33 -14.55 12.18 -49.54 -0.60 -15.16 16 18 N -0.34 -13.58 11.25 -58.00 -0.65 -14.23 16 19 C 0.34 10.51 6.68 260.11 1.74 12.25 16 20 N -0.41 -8.88 4.74 -692.05 -3.28 -12.16 16 21 C 0.06 1.20 6.09 86.45 0.53 1.73 16 22 C -0.13 -1.61 7.11 -9.89 -0.07 -1.68 16 23 H 0.19 0.94 8.14 -2.38 -0.02 0.92 16 24 C -0.14 -1.75 7.11 -9.89 -0.07 -1.82 16 25 H 0.19 1.12 8.14 -2.39 -0.02 1.10 16 26 C 0.06 1.14 6.13 86.45 0.53 1.67 16 27 C 0.20 3.56 5.12 30.60 0.16 3.71 16 28 F -0.18 -4.63 16.22 44.97 0.73 -3.90 16 29 F -0.15 -2.79 17.60 44.97 0.79 -2.00 16 30 H 0.12 1.98 8.05 -2.91 -0.02 1.95 16 31 H 0.09 2.13 7.05 -2.91 -0.02 2.11 16 32 H 0.08 1.14 7.32 -2.38 -0.02 1.13 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 2.58 7.45 -2.39 -0.02 2.56 16 36 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.09 3.60 8.14 -2.38 -0.02 3.59 16 38 H 0.09 3.42 6.88 -2.39 -0.02 3.40 16 39 H -0.01 -0.47 8.01 -2.39 -0.02 -0.49 16 40 H -0.02 -1.21 8.01 -2.39 -0.02 -1.22 16 41 H 0.25 15.99 7.22 -92.71 -0.67 15.32 16 42 H 0.06 1.46 6.80 -2.39 -0.02 1.44 16 43 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.04 1.13 7.48 -2.39 -0.02 1.11 16 Total: -1.00 -74.79 382.18 5.87 -68.92 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.11 Total: 12.33 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 6.89 Total: -11.20 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -5.69 Total: -114.97 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 1.52 Total: -5.90 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.05 Total: 50.81 kcal Total: -74.79 5.87 -68.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341979881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.861 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds