Wall clock time and date at job start Tue Mar 31 2020 21:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00035 * 2 1 4 4 C 1.50702 * 109.46757 * 269.99710 * 3 2 1 5 5 H 1.08003 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00261 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99491 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00272 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46886 * 90.00413 * 8 6 4 10 10 H 1.48497 * 109.47210 * 210.00141 * 8 6 4 11 11 H 1.48497 * 109.47264 * 330.00268 * 8 6 4 12 12 C 1.34778 * 120.00010 * 179.97438 * 2 1 3 13 13 O 1.21700 * 119.99892 * 185.08975 * 12 2 1 14 14 C 1.46594 * 119.99901 * 5.08281 * 12 2 1 15 15 C 1.39142 * 126.97522 * 91.00745 * 14 12 2 16 16 N 1.39683 * 127.42286 * 359.94592 * 15 14 12 17 17 C 1.34770 * 120.00310 * 179.97438 * 16 15 14 18 18 O 1.21510 * 120.00284 * 359.97438 * 17 16 15 19 19 O 1.34642 * 120.00084 * 180.02562 * 17 16 15 20 20 C 1.45199 * 117.00577 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47105 * 59.99506 * 20 19 17 22 22 C 1.52999 * 109.47602 * 180.02562 * 20 19 17 23 23 C 1.53005 * 109.46707 * 299.99807 * 20 19 17 24 24 C 1.40390 * 105.16535 * 180.20307 * 15 14 12 25 25 N 1.30707 * 107.89475 * 359.62709 * 24 15 14 26 26 N 1.28397 * 111.20926 * 0.39307 * 25 24 15 27 27 C 1.46498 * 125.15799 * 179.78177 * 26 25 24 28 28 H 1.09004 * 109.47576 * 264.59163 * 1 2 3 29 29 H 1.09001 * 109.46983 * 24.59586 * 1 2 3 30 30 H 1.09004 * 109.46964 * 144.58884 * 1 2 3 31 31 H 1.09000 * 109.47342 * 29.99221 * 3 2 1 32 32 H 1.08994 * 109.47181 * 149.99817 * 3 2 1 33 33 H 0.96994 * 119.99727 * 179.97438 * 7 6 4 34 34 H 0.97001 * 119.99252 * 359.97438 * 16 15 14 35 35 H 1.08998 * 109.47379 * 60.00286 * 21 20 19 36 36 H 1.08993 * 109.47238 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47492 * 300.00441 * 21 20 19 38 38 H 1.08992 * 109.47092 * 59.99731 * 22 20 19 39 39 H 1.08993 * 109.46867 * 179.97438 * 22 20 19 40 40 H 1.08998 * 109.46542 * 299.99506 * 22 20 19 41 41 H 1.09000 * 109.47030 * 60.00085 * 23 20 19 42 42 H 1.08993 * 109.47311 * 179.97438 * 23 20 19 43 43 H 1.08992 * 109.47324 * 299.99863 * 23 20 19 44 44 H 1.08002 * 126.04770 * 179.75570 * 24 15 14 45 45 H 1.08998 * 109.47470 * 274.88490 * 27 26 25 46 46 H 1.09001 * 109.47351 * 34.88394 * 27 26 25 47 47 H 1.09004 * 109.47351 * 154.88795 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6730 7 7 3.5525 3.6185 -0.6733 8 14 3.4380 3.4166 -3.4341 9 1 2.3078 4.2589 -3.9016 10 1 4.6980 4.2000 -3.4963 11 1 3.5562 2.2192 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3523 -1.1692 0.0940 14 6 1.4102 -2.4343 -0.1114 15 6 1.0964 -3.1187 -1.2815 16 7 1.4059 -2.7463 -2.5917 17 6 1.0264 -3.5279 -3.6220 18 8 0.4153 -4.5568 -3.4111 19 8 1.3251 -3.1692 -4.8848 20 6 0.8845 -4.0585 -5.9446 21 6 -0.6396 -4.1856 -5.9030 22 6 1.3126 -3.4897 -7.2989 23 6 1.5168 -5.4379 -5.7486 24 6 0.3965 -4.2612 -0.8622 25 7 0.3258 -4.2325 0.4426 26 7 0.8998 -3.1862 0.9161 27 6 0.9957 -2.8470 2.3380 28 1 -0.3634 -0.0969 1.0231 29 1 -0.3633 0.9344 -0.4277 30 1 -0.3633 -0.8376 -0.5955 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1384 0.5138 33 1 4.0293 4.4444 -0.8506 34 1 1.8940 -1.9252 -2.7600 35 1 -1.0901 -3.2029 -6.0426 36 1 -0.9704 -4.8535 -6.6983 37 1 -0.9443 -4.5911 -4.9382 38 1 2.3984 -3.3995 -7.3282 39 1 0.9822 -4.1576 -8.0943 40 1 0.8625 -2.5069 -7.4387 41 1 1.2122 -5.8435 -4.7838 42 1 1.1857 -6.1057 -6.5438 43 1 2.6026 -5.3474 -5.7782 44 1 -0.0097 -5.0289 -1.5042 45 1 0.0919 -2.3227 2.6483 46 1 1.1047 -3.7604 2.9229 47 1 1.8619 -2.2057 2.5010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362160839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:32 Heat of formation + Delta-G solvation = -26.481669 kcal Electronic energy + Delta-G solvation = -30789.571860 eV Core-core repulsion = 26589.232405 eV Total energy + Delta-G solvation = -4200.339455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42847 -40.81413 -38.80055 -37.64340 -35.07667 -35.00103 -34.11019 -32.85089 -32.56254 -30.14632 -27.85895 -27.55455 -27.51152 -26.86314 -25.98626 -23.94237 -23.38129 -21.55655 -21.12772 -19.96852 -19.13502 -17.93098 -17.36818 -16.83356 -16.66079 -16.42350 -16.06798 -15.76974 -15.34233 -15.19022 -14.56989 -14.51323 -14.40827 -14.11256 -13.64852 -13.62228 -13.05738 -12.83324 -12.71669 -12.62006 -12.45479 -12.38216 -12.24292 -12.03772 -12.03602 -11.98521 -11.78879 -11.39480 -11.32487 -11.00261 -10.94983 -10.70103 -10.68071 -10.46724 -10.27420 -10.06192 -9.77774 -9.43320 -8.96388 -8.53268 -7.89436 -7.85342 -6.14846 -4.20728 1.70559 1.90894 2.46383 2.54313 3.12221 3.16099 3.24743 3.32116 3.36134 3.77133 4.05431 4.36085 4.56110 4.62030 4.64546 4.75246 4.80137 5.08657 5.13838 5.20636 5.32129 5.35721 5.39088 5.40641 5.54862 5.55488 5.56935 5.61167 5.66820 5.71532 5.78988 5.83483 5.99253 6.11269 6.14947 6.21495 6.43276 6.72025 6.86048 6.92154 7.24787 7.32961 7.35874 7.79838 8.08354 8.12583 8.16793 8.31010 8.65444 8.85380 9.45062 10.93276 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008186 B = 0.004692 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.521437 B = 5966.166247 C = 8804.472974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.583 5.583 3 C 0.243 3.757 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.575 3.425 13 O -0.521 6.521 14 C -0.037 4.037 15 C 0.080 3.920 16 N -0.614 5.614 17 C 0.660 3.340 18 O -0.557 6.557 19 O -0.356 6.356 20 C 0.136 3.864 21 C -0.184 4.184 22 C -0.142 4.142 23 C -0.184 4.184 24 C 0.010 3.990 25 N -0.280 5.280 26 N -0.271 5.271 27 C 0.093 3.907 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.423 0.577 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.206 0.794 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.974 -14.405 -4.634 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.315 5.315 3 C 0.125 3.875 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.357 3.643 13 O -0.397 6.397 14 C -0.169 4.169 15 C -0.025 4.025 16 N -0.264 5.264 17 C 0.414 3.586 18 O -0.446 6.446 19 O -0.271 6.271 20 C 0.100 3.900 21 C -0.241 4.241 22 C -0.199 4.199 23 C -0.241 4.241 24 C -0.170 4.170 25 N -0.111 5.111 26 N -0.061 5.061 27 C -0.047 4.047 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.222 0.778 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.903 -15.247 -3.509 18.001 hybrid contribution 0.672 1.295 -1.800 2.317 sum -8.231 -13.952 -5.309 17.046 Atomic orbital electron populations 1.21665 0.80875 1.03172 1.00384 1.48211 1.06539 1.07280 1.69429 1.19441 0.92712 0.77405 0.97959 1.21367 1.37123 1.06633 0.91946 0.92381 1.24917 0.95126 0.96264 0.97536 1.69922 1.38018 1.14265 1.30824 0.86498 0.77773 0.78760 0.84459 1.20560 1.21018 1.19705 1.16829 0.86536 0.81806 0.79112 1.90854 1.12977 1.86674 1.49152 1.21051 1.09287 0.98619 0.87917 1.17508 1.05418 0.97589 0.82003 1.40944 1.57870 1.26243 1.01340 1.17728 0.78088 0.81938 0.80816 1.90782 1.44286 1.24983 1.84569 1.86350 1.74843 1.52244 1.13654 1.22120 0.94823 0.88810 0.84270 1.22525 0.93796 1.02831 1.04958 1.21872 1.02844 1.02137 0.93085 1.22530 1.01118 0.95594 1.04905 1.23967 1.03723 0.99365 0.89910 1.73038 1.17552 1.07866 1.12643 1.45239 1.39274 1.14744 1.06845 1.22146 1.04387 1.03280 0.74935 0.93687 0.90066 0.92474 0.94445 0.93410 0.92557 0.73955 0.92020 0.91140 0.89224 0.91323 0.90114 0.91281 0.89216 0.91134 0.92059 0.77784 0.89660 0.88466 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.22 59.85 0.61 1.93 16 2 N -0.58 -11.76 2.86 -184.54 -0.53 -12.29 16 3 C 0.24 5.98 5.18 -5.19 -0.03 5.96 16 4 C -0.53 -14.23 9.39 -34.44 -0.32 -14.56 16 5 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 C 0.57 11.77 6.76 -12.89 -0.09 11.69 16 13 O -0.52 -12.79 16.66 5.19 0.09 -12.70 16 14 C -0.04 -0.66 4.93 -81.77 -0.40 -1.06 16 15 C 0.08 1.35 6.94 -83.14 -0.58 0.78 16 16 N -0.61 -10.05 5.43 -13.90 -0.08 -10.12 16 17 C 0.66 10.13 8.02 54.05 0.43 10.57 16 18 O -0.56 -8.54 9.17 -19.28 -0.18 -8.72 16 19 O -0.36 -5.08 9.94 -40.33 -0.40 -5.48 16 20 C 0.14 1.52 1.13 -90.62 -0.10 1.41 16 21 C -0.18 -1.90 8.37 37.16 0.31 -1.58 16 22 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 23 C -0.18 -1.92 8.37 37.16 0.31 -1.61 16 24 C 0.01 0.16 10.87 -17.22 -0.19 -0.03 16 25 N -0.28 -4.34 11.87 30.71 0.36 -3.98 16 26 N -0.27 -4.09 3.76 -63.72 -0.24 -4.33 16 27 C 0.09 1.01 11.22 59.85 0.67 1.69 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 30 H 0.06 0.87 6.91 -51.93 -0.36 0.51 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.42 7.17 8.84 -40.82 -0.36 6.81 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.10 5.88 -51.93 -0.31 0.80 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.21 3.07 6.08 -52.49 -0.32 2.75 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.10 7.67 -51.93 -0.40 0.70 16 LS Contribution 391.80 15.07 5.90 5.90 Total: -1.00 -32.39 391.80 -5.52 -37.91 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.04 Total: 6.58 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 0.86 Total: 15.91 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.26 Total: -55.41 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.49 Total: -26.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.39 -5.52 -37.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362160839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.427 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds