Wall clock time and date at job start Tue Mar 31 2020 21:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 120.00035 * 2 1 4 4 C 1.50702 * 109.46757 * 269.99710 * 3 2 1 5 5 H 1.08003 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00261 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99491 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00272 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46886 * 90.00413 * 8 6 4 10 10 H 1.48497 * 109.47210 * 210.00141 * 8 6 4 11 11 H 1.48497 * 109.47264 * 330.00268 * 8 6 4 12 12 C 1.34778 * 120.00010 * 179.97438 * 2 1 3 13 13 O 1.21700 * 119.99892 * 185.08975 * 12 2 1 14 14 C 1.46594 * 119.99901 * 5.08281 * 12 2 1 15 15 C 1.39142 * 126.97522 * 91.00745 * 14 12 2 16 16 N 1.39683 * 127.42286 * 359.94592 * 15 14 12 17 17 C 1.34770 * 120.00310 * 179.97438 * 16 15 14 18 18 O 1.21510 * 120.00284 * 359.97438 * 17 16 15 19 19 O 1.34642 * 120.00084 * 180.02562 * 17 16 15 20 20 C 1.45199 * 117.00577 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47105 * 59.99506 * 20 19 17 22 22 C 1.52999 * 109.47602 * 180.02562 * 20 19 17 23 23 C 1.53005 * 109.46707 * 299.99807 * 20 19 17 24 24 C 1.40390 * 105.16535 * 180.20307 * 15 14 12 25 25 N 1.30707 * 107.89475 * 359.62709 * 24 15 14 26 26 N 1.28397 * 111.20926 * 0.39307 * 25 24 15 27 27 C 1.46498 * 125.15799 * 179.78177 * 26 25 24 28 28 H 1.09004 * 109.47576 * 264.59163 * 1 2 3 29 29 H 1.09001 * 109.46983 * 24.59586 * 1 2 3 30 30 H 1.09004 * 109.46964 * 144.58884 * 1 2 3 31 31 H 1.09000 * 109.47342 * 29.99221 * 3 2 1 32 32 H 1.08994 * 109.47181 * 149.99817 * 3 2 1 33 33 H 0.96994 * 119.99727 * 179.97438 * 7 6 4 34 34 H 0.97001 * 119.99252 * 359.97438 * 16 15 14 35 35 H 1.08998 * 109.47379 * 60.00286 * 21 20 19 36 36 H 1.08993 * 109.47238 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.47492 * 300.00441 * 21 20 19 38 38 H 1.08992 * 109.47092 * 59.99731 * 22 20 19 39 39 H 1.08993 * 109.46867 * 179.97438 * 22 20 19 40 40 H 1.08998 * 109.46542 * 299.99506 * 22 20 19 41 41 H 1.09000 * 109.47030 * 60.00085 * 23 20 19 42 42 H 1.08993 * 109.47311 * 179.97438 * 23 20 19 43 43 H 1.08992 * 109.47324 * 299.99863 * 23 20 19 44 44 H 1.08002 * 126.04770 * 179.75570 * 24 15 14 45 45 H 1.08998 * 109.47470 * 274.88490 * 27 26 25 46 46 H 1.09001 * 109.47351 * 34.88394 * 27 26 25 47 47 H 1.09004 * 109.47351 * 154.88795 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0982 1.0956 -2.2417 6 6 3.1261 2.8778 -1.6730 7 7 3.5525 3.6185 -0.6733 8 14 3.4380 3.4166 -3.4341 9 1 2.3078 4.2589 -3.9016 10 1 4.6980 4.2000 -3.4963 11 1 3.5562 2.2192 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3523 -1.1692 0.0940 14 6 1.4102 -2.4343 -0.1114 15 6 1.0964 -3.1187 -1.2815 16 7 1.4059 -2.7463 -2.5917 17 6 1.0264 -3.5279 -3.6220 18 8 0.4153 -4.5568 -3.4111 19 8 1.3251 -3.1692 -4.8848 20 6 0.8845 -4.0585 -5.9446 21 6 -0.6396 -4.1856 -5.9030 22 6 1.3126 -3.4897 -7.2989 23 6 1.5168 -5.4379 -5.7486 24 6 0.3965 -4.2612 -0.8622 25 7 0.3258 -4.2325 0.4426 26 7 0.8998 -3.1862 0.9161 27 6 0.9957 -2.8470 2.3380 28 1 -0.3634 -0.0969 1.0231 29 1 -0.3633 0.9344 -0.4277 30 1 -0.3633 -0.8376 -0.5955 31 1 1.6084 2.0285 0.5137 32 1 3.1499 1.1384 0.5138 33 1 4.0293 4.4444 -0.8506 34 1 1.8940 -1.9252 -2.7600 35 1 -1.0901 -3.2029 -6.0426 36 1 -0.9704 -4.8535 -6.6983 37 1 -0.9443 -4.5911 -4.9382 38 1 2.3984 -3.3995 -7.3282 39 1 0.9822 -4.1576 -8.0943 40 1 0.8625 -2.5069 -7.4387 41 1 1.2122 -5.8435 -4.7838 42 1 1.1857 -6.1057 -6.5438 43 1 2.6026 -5.3474 -5.7782 44 1 -0.0097 -5.0289 -1.5042 45 1 0.0919 -2.3227 2.6483 46 1 1.1047 -3.7604 2.9229 47 1 1.8619 -2.2057 2.5010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362160839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:31 Heat of formation + Delta-G solvation = -48.659220 kcal Electronic energy + Delta-G solvation = -30790.533551 eV Core-core repulsion = 26589.232405 eV Total energy + Delta-G solvation = -4201.301146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.69238 -41.92233 -40.46988 -38.71882 -36.75002 -36.28686 -35.05159 -34.76611 -33.79765 -31.56799 -29.66653 -28.32235 -28.29969 -27.93911 -27.49366 -25.65240 -24.67983 -23.06482 -22.27072 -21.12089 -20.46500 -19.06698 -18.80498 -18.68389 -18.04814 -17.73423 -17.34723 -16.89520 -16.85333 -16.56260 -16.27058 -15.68187 -15.45245 -15.40026 -15.07657 -14.49532 -14.35497 -14.22090 -14.08146 -13.79268 -13.67330 -13.55476 -13.32716 -13.23795 -13.18729 -12.89191 -12.87476 -12.86858 -12.69703 -12.55658 -12.30143 -12.23879 -12.04385 -11.99037 -11.74507 -11.41777 -11.18385 -11.09286 -10.63658 -10.20662 -9.61504 -9.14745 -8.23341 -6.37166 0.39955 0.76759 1.14430 1.32119 1.39230 1.41505 1.51117 1.69210 1.91564 2.23854 2.40885 2.94037 3.08160 3.38068 3.51577 3.75123 3.81520 3.95491 3.97140 4.19339 4.27732 4.29891 4.43446 4.52919 4.55999 4.58697 4.66024 4.70706 4.78510 4.79996 4.82452 4.88256 4.90221 4.94778 5.15938 5.19556 5.32206 5.32968 5.42445 5.45545 5.53447 5.69015 5.74979 6.01873 6.10095 6.46336 6.69602 6.92625 7.06066 7.11371 7.34217 8.84222 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008186 B = 0.004692 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.521437 B = 5966.166247 C = 8804.472974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.583 5.583 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.961 3.039 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.582 3.418 13 O -0.572 6.572 14 C -0.055 4.055 15 C 0.077 3.923 16 N -0.621 5.621 17 C 0.660 3.340 18 O -0.557 6.557 19 O -0.368 6.368 20 C 0.122 3.878 21 C -0.179 4.179 22 C -0.139 4.139 23 C -0.180 4.180 24 C 0.006 3.994 25 N -0.269 5.269 26 N -0.261 5.261 27 C 0.081 3.919 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.009 0.991 33 H 0.268 0.732 34 H 0.418 0.582 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.212 0.788 45 H 0.113 0.887 46 H 0.123 0.877 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 -15.461 -5.965 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.313 5.313 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.195 1.195 12 C 0.367 3.633 13 O -0.451 6.451 14 C -0.186 4.186 15 C -0.028 4.028 16 N -0.270 5.270 17 C 0.414 3.586 18 O -0.447 6.447 19 O -0.282 6.282 20 C 0.086 3.914 21 C -0.236 4.236 22 C -0.196 4.196 23 C -0.237 4.237 24 C -0.173 4.173 25 N -0.101 5.101 26 N -0.052 5.052 27 C -0.058 4.058 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.076 0.924 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.229 0.771 45 H 0.131 0.869 46 H 0.141 0.859 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.558 -16.323 -4.844 20.035 hybrid contribution 1.135 1.562 -1.357 2.360 sum -9.423 -14.761 -6.201 18.578 Atomic orbital electron populations 1.21867 0.77939 1.03591 1.02609 1.48126 1.08246 1.05931 1.68948 1.18963 0.91483 0.79169 0.96606 1.21650 1.37115 1.06747 0.92783 0.92514 1.25747 0.94827 0.96375 1.01546 1.70030 1.38732 1.14738 1.32886 0.85506 0.77958 0.78399 0.79578 1.19075 1.20847 1.19461 1.17058 0.85931 0.82645 0.77674 1.90820 1.15317 1.87506 1.51410 1.20534 1.10867 0.98053 0.89157 1.17695 1.05235 0.97781 0.82089 1.41045 1.58070 1.26253 1.01634 1.17760 0.77948 0.81746 0.81101 1.90777 1.44252 1.24880 1.84752 1.86369 1.74947 1.53359 1.13556 1.22578 0.95537 0.88968 0.84273 1.22482 0.93135 1.03200 1.04805 1.21922 1.02675 1.02648 0.92334 1.22493 1.00850 0.95629 1.04754 1.24027 1.03918 0.99203 0.90110 1.73043 1.17072 1.07502 1.12467 1.45613 1.38024 1.13844 1.07710 1.22539 1.05355 1.04855 0.73004 0.90554 0.90054 0.91520 0.94744 0.97289 0.92355 0.74643 0.92240 0.88467 0.91230 0.91649 0.87190 0.91540 0.91303 0.88410 0.92430 0.77142 0.86906 0.85873 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 10.22 127.77 1.31 3.82 16 2 N -0.58 -23.74 2.86 -855.96 -2.45 -26.18 16 3 C 0.26 13.08 5.18 85.63 0.44 13.52 16 4 C -0.54 -29.62 9.39 25.60 0.24 -29.38 16 5 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.81 5.46 84.65 0.46 1.28 16 7 N -0.92 -53.56 13.29 21.45 0.28 -53.27 16 8 Si 0.96 43.16 29.54 68.60 2.03 45.18 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.58 24.32 6.76 86.42 0.58 24.91 16 13 O -0.57 -29.21 16.66 -4.35 -0.07 -29.29 16 14 C -0.05 -1.90 4.93 40.71 0.20 -1.70 16 15 C 0.08 2.60 6.94 38.63 0.27 2.87 16 16 N -0.62 -20.48 5.43 -428.29 -2.33 -22.81 16 17 C 0.66 20.20 8.02 129.79 1.04 21.24 16 18 O -0.56 -16.88 9.17 19.81 0.18 -16.69 16 19 O -0.37 -10.34 9.94 -55.51 -0.55 -10.89 16 20 C 0.12 2.54 1.13 -10.79 -0.01 2.53 16 21 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 22 C -0.14 -2.15 8.85 71.98 0.64 -1.52 16 23 C -0.18 -3.49 8.37 71.98 0.60 -2.88 16 24 C 0.01 0.18 10.87 85.38 0.93 1.11 16 25 N -0.27 -7.86 11.87 -56.74 -0.67 -8.53 16 26 N -0.26 -7.50 3.76 -355.52 -1.34 -8.84 16 27 C 0.08 1.61 11.22 127.77 1.43 3.04 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.49 8.03 -2.39 -0.02 2.48 16 30 H 0.07 1.94 6.91 -2.38 -0.02 1.92 16 31 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 32 H 0.01 0.52 7.36 -2.39 -0.02 0.51 16 33 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 34 H 0.42 14.53 8.84 -92.71 -0.82 13.71 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.62 5.88 -2.39 -0.01 1.60 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.64 5.88 -2.39 -0.01 1.63 16 42 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.21 6.11 6.08 -2.91 -0.02 6.09 16 45 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.08 1.90 7.67 -2.38 -0.02 1.88 16 Total: -1.00 -71.34 391.80 4.00 -67.34 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.18 Total: 27.94 kcal Atomic # 6 Polarization: 27.31 SS G_CDS: 8.74 Total: 36.05 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -6.50 Total: -119.64 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -0.44 Total: -56.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -71.34 4.00 -67.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362160839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.682 kcal (2) G-P(sol) polarization free energy of solvation -71.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds