Wall clock time and date at job start Tue Mar 31 2020 21:32:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.45196 * 109.47016 * 2 1
4 4 C 1.34778 * 116.99511 * 180.02562 * 3 2 1
5 5 O 1.21544 * 120.00549 * 0.02562 * 4 3 2
6 6 C 1.47083 * 120.00126 * 179.97438 * 4 3 2
7 7 C 1.38201 * 126.46096 * 0.03133 * 6 4 3
8 8 N 1.34124 * 107.53280 * 179.97438 * 7 6 4
9 9 C 1.46501 * 125.66881 * 180.02562 * 8 7 6
10 10 C 1.52997 * 109.46845 * 124.99777 * 9 8 7
11 11 N 1.39922 * 108.66809 * 359.74841 * 8 7 6
12 12 C 1.30902 * 108.88219 * 0.42983 * 11 8 7
13 13 N 1.39783 * 126.07752 * 179.85293 * 12 11 8
14 14 C 1.34777 * 119.99895 * 359.40339 * 13 12 11
15 15 O 1.21593 * 119.99949 * 0.28290 * 14 13 12
16 16 N 1.34777 * 120.00128 * 180.28160 * 14 13 12
17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13
18 18 H 1.08993 * 109.47324 * 325.00194 * 17 16 14
19 19 C 1.50699 * 109.47054 * 204.99851 * 17 16 14
20 20 H 1.08004 * 119.99929 * 359.97438 * 19 17 16
21 21 C 1.37876 * 119.99861 * 180.02562 * 19 17 16
22 22 N 1.31518 * 120.00146 * 179.97438 * 21 19 17
23 23 Si 1.86801 * 120.00174 * 359.97438 * 21 19 17
24 24 H 1.48503 * 109.46912 * 90.00239 * 23 21 19
25 25 H 1.48506 * 109.47217 * 209.99960 * 23 21 19
26 26 H 1.48500 * 109.47225 * 330.00261 * 23 21 19
27 27 C 1.53008 * 109.47215 * 84.99926 * 17 16 14
28 28 C 1.53002 * 109.46836 * 295.00234 * 27 17 16
29 29 H 1.09006 * 109.46861 * 300.00164 * 1 2 3
30 30 H 1.08997 * 109.46949 * 59.99328 * 1 2 3
31 31 H 1.08994 * 109.47296 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.46389 * 239.99926 * 2 1 3
33 33 H 1.09001 * 109.46975 * 119.99918 * 2 1 3
34 34 H 1.08005 * 126.23476 * 359.95184 * 7 6 4
35 35 H 1.08993 * 109.47316 * 244.99808 * 9 8 7
36 36 H 1.09004 * 109.46508 * 5.00436 * 9 8 7
37 37 H 1.09003 * 109.47477 * 60.00689 * 10 9 8
38 38 H 1.09006 * 109.46750 * 180.02562 * 10 9 8
39 39 H 1.09001 * 109.47461 * 300.00077 * 10 9 8
40 40 H 0.97001 * 120.00316 * 179.69004 * 13 12 11
41 41 H 0.97000 * 119.99549 * 359.97438 * 16 14 13
42 42 H 0.97000 * 120.00515 * 179.97438 * 22 21 19
43 43 H 1.08996 * 109.46689 * 54.99465 * 27 17 16
44 44 H 1.08994 * 109.47098 * 175.00111 * 27 17 16
45 45 H 1.09002 * 109.46537 * 299.99451 * 28 27 17
46 46 H 1.08994 * 109.47377 * 60.00048 * 28 27 17
47 47 H 1.08995 * 109.46948 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3502 1.5454 -0.0005
5 8 4.0906 0.5816 -0.0015
6 6 3.9125 2.9045 -0.0011
7 6 3.1994 4.0884 -0.0006
8 7 4.0865 5.0944 -0.0009
9 6 3.7587 6.5223 0.0000
10 6 4.4520 7.2038 1.1814
11 7 5.3769 4.5536 0.0042
12 6 5.2890 3.2475 -0.0017
13 7 6.3609 2.3503 -0.0022
14 6 7.6268 2.8129 -0.0084
15 8 7.8365 4.0106 -0.0083
16 7 8.6603 1.9478 -0.0146
17 6 10.0363 2.4506 -0.0208
18 1 10.0858 3.3667 -0.6092
19 6 10.9470 1.4142 -0.6271
20 1 10.5415 0.4748 -0.9728
21 6 12.2982 1.6649 -0.7394
22 7 13.0931 0.7603 -1.2680
23 14 12.9997 3.2894 -0.1407
24 1 13.3944 3.1625 1.2853
25 1 14.1904 3.6442 -0.9542
26 1 11.9721 4.3527 -0.2772
27 6 10.4793 2.7418 1.4145
28 6 9.6345 3.8815 1.9876
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3633 -1.0276 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.1238 4.1857 -0.0004
35 1 4.1000 6.9740 -0.9314
36 1 2.6797 6.6472 0.0906
37 1 5.5311 7.0789 1.0909
38 1 4.2078 8.2662 1.1823
39 1 4.1107 6.7521 2.1129
40 1 6.1937 1.3949 -0.0024
41 1 8.4930 0.9923 -0.0143
42 1 14.0436 0.9367 -1.3474
43 1 10.3457 1.8484 2.0243
44 1 11.5302 3.0309 1.4188
45 1 9.7681 4.7749 1.3777
46 1 8.5836 3.5924 1.9834
47 1 9.9503 4.0893 3.0099
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365538770.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:32:43
Heat of formation + Delta-G solvation = -30.035318 kcal
Electronic energy + Delta-G solvation = -29921.542594 eV
Core-core repulsion = 25721.049041 eV
Total energy + Delta-G solvation = -4200.493553 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.64470 -40.03698 -39.47056 -36.68978 -35.87829 -34.74040 -33.52963 -32.30069
-32.06449 -31.32860 -30.34999 -29.35260 -27.37309 -24.65449 -23.96686 -22.78555
-22.44394 -21.90934 -20.89098 -19.91522 -19.56734 -18.22087 -17.79130 -17.36699
-16.70502 -16.37552 -16.20106 -15.88895 -15.73557 -15.14693 -14.82740 -14.32102
-14.16138 -14.00124 -13.79176 -13.46722 -13.24223 -13.11279 -13.02163 -12.79322
-12.42734 -12.31334 -12.15760 -11.93270 -11.84879 -11.74012 -11.65729 -11.05744
-10.88691 -10.85158 -10.71542 -10.64862 -10.55395 -10.45448 -9.85435 -9.54985
-9.31006 -9.14819 -9.01663 -8.70367 -8.36303 -7.92992 -6.15715 -4.17766
1.20086 2.03311 2.14300 2.55250 3.07805 3.15442 3.28361 3.39835
3.46361 3.95415 4.13381 4.36758 4.42898 4.65094 4.66717 4.68556
4.74039 4.87201 4.91175 5.00542 5.08992 5.18062 5.19810 5.34094
5.47879 5.48449 5.52827 5.64758 5.75682 5.98444 6.06191 6.11314
6.25111 6.31612 6.64594 6.70615 6.75218 6.83532 6.92310 7.04118
7.12123 7.37127 7.39519 7.58110 7.75232 7.81445 8.34860 8.69714
8.84577 9.18953 9.45626 10.96379
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.003106 C = 0.002590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.695158 B = 9012.741301 C =10807.867394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.063 3.937
3 O -0.359 6.359
4 C 0.549 3.451
5 O -0.522 6.522
6 C -0.311 4.311
7 C 0.141 3.859
8 N -0.351 5.351
9 C 0.129 3.871
10 C -0.168 4.168
11 N -0.272 5.272
12 C 0.384 3.616
13 N -0.650 5.650
14 C 0.688 3.312
15 O -0.550 6.550
16 N -0.710 5.710
17 C 0.261 3.739
18 H 0.050 0.950
19 C -0.533 4.533
20 H 0.081 0.919
21 C 0.079 3.921
22 N -0.893 5.893
23 Si 0.883 3.117
24 H -0.276 1.276
25 H -0.295 1.295
26 H -0.259 1.259
27 C -0.140 4.140
28 C -0.141 4.141
29 H 0.065 0.935
30 H 0.066 0.934
31 H 0.078 0.922
32 H 0.070 0.930
33 H 0.070 0.930
34 H 0.191 0.809
35 H 0.092 0.908
36 H 0.099 0.901
37 H 0.079 0.921
38 H 0.075 0.925
39 H 0.060 0.940
40 H 0.423 0.577
41 H 0.393 0.607
42 H 0.267 0.733
43 H 0.058 0.942
44 H 0.054 0.946
45 H 0.052 0.948
46 H 0.052 0.948
47 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.915 6.307 4.302 28.940
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.010 4.010
3 O -0.276 6.276
4 C 0.395 3.605
5 O -0.412 6.412
6 C -0.327 4.327
7 C -0.014 4.014
8 N -0.129 5.129
9 C 0.009 3.991
10 C -0.225 4.225
11 N -0.101 5.101
12 C 0.124 3.876
13 N -0.306 5.306
14 C 0.388 3.612
15 O -0.424 6.424
16 N -0.362 5.362
17 C 0.157 3.843
18 H 0.068 0.932
19 C -0.571 4.571
20 H 0.099 0.901
21 C -0.125 4.125
22 N -0.530 5.530
23 Si 0.712 3.288
24 H -0.203 1.203
25 H -0.222 1.222
26 H -0.183 1.183
27 C -0.179 4.179
28 C -0.198 4.198
29 H 0.084 0.916
30 H 0.085 0.915
31 H 0.097 0.903
32 H 0.089 0.911
33 H 0.088 0.912
34 H 0.208 0.792
35 H 0.110 0.890
36 H 0.117 0.883
37 H 0.098 0.902
38 H 0.094 0.906
39 H 0.079 0.921
40 H 0.262 0.738
41 H 0.227 0.773
42 H 0.077 0.923
43 H 0.077 0.923
44 H 0.072 0.928
45 H 0.072 0.928
46 H 0.071 0.929
47 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -26.406 8.169 4.243 27.964
hybrid contribution -0.210 -1.111 0.315 1.174
sum -26.616 7.057 4.559 27.910
Atomic orbital electron populations
1.21805 0.92755 1.02950 1.03375 1.23001 0.95068 0.80149 1.02829
1.86510 1.23930 1.32287 1.84907 1.19850 0.80208 0.88249 0.72149
1.90791 1.60203 1.42116 1.48045 1.18918 0.91331 0.90931 1.31510
1.23120 0.97190 0.86481 0.94640 1.48640 1.04274 1.06745 1.53199
1.21844 1.00749 0.74891 1.01615 1.22064 1.03275 1.00245 0.96952
1.78206 0.95647 1.06154 1.30136 1.18795 0.85434 0.88865 0.94533
1.42455 1.02571 1.09237 1.76303 1.16127 0.79839 0.86393 0.78855
1.90983 1.82886 1.13198 1.55294 1.45399 1.05731 1.08414 1.76688
1.19072 0.76357 0.96538 0.92337 0.93178 1.21058 0.91908 1.03027
1.41152 0.90109 1.24814 0.96634 0.96681 0.94353 1.69869 1.04814
1.34269 1.44038 0.86906 0.78774 0.84923 0.78148 1.20252 1.22238
1.18346 1.22315 0.98561 0.97637 0.99339 1.21842 1.00219 0.99398
0.98385 0.91560 0.91530 0.90275 0.91113 0.91151 0.79229 0.89022
0.88275 0.90246 0.90609 0.92062 0.73792 0.77344 0.92318 0.92299
0.92783 0.92848 0.92917 0.95205
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.80 10.29 37.16 0.38 -0.42 16
2 C 0.06 0.53 6.20 37.16 0.23 0.76 16
3 O -0.36 -3.74 10.05 -40.70 -0.41 -4.15 16
4 C 0.55 7.23 7.95 34.32 0.27 7.50 16
5 O -0.52 -8.03 14.99 -19.30 -0.29 -8.32 16
6 C -0.31 -4.17 6.14 -104.94 -0.64 -4.81 16
7 C 0.14 1.38 11.27 -16.56 -0.19 1.19 16
8 N -0.35 -4.03 3.65 -60.80 -0.22 -4.25 16
9 C 0.13 0.92 7.20 -4.04 -0.03 0.89 16
10 C -0.17 -1.33 10.08 37.16 0.37 -0.95 16
11 N -0.27 -4.62 10.54 31.62 0.33 -4.28 16
12 C 0.38 6.48 7.79 -154.46 -1.20 5.28 16
13 N -0.65 -11.60 5.42 -15.30 -0.08 -11.68 16
14 C 0.69 14.43 7.10 -86.92 -0.62 13.81 16
15 O -0.55 -13.03 12.20 5.28 0.06 -12.97 16
16 N -0.71 -15.09 5.03 -59.81 -0.30 -15.40 16
17 C 0.26 6.41 1.83 -69.08 -0.13 6.29 16
18 H 0.05 1.36 6.63 -51.93 -0.34 1.02 16
19 C -0.53 -14.77 9.31 -34.44 -0.32 -15.09 16
20 H 0.08 2.35 7.98 -52.48 -0.42 1.93 16
21 C 0.08 2.25 5.45 -17.82 -0.10 2.16 16
22 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16
23 Si 0.88 22.22 24.41 -169.99 -4.15 18.08 16
24 H -0.28 -6.72 6.83 56.52 0.39 -6.34 16
25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
26 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16
27 C -0.14 -3.23 5.11 -26.73 -0.14 -3.37 16
28 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16
29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
34 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16
35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.10 0.31 8.06 -51.93 -0.42 -0.11 16
37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16
39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
40 H 0.42 6.86 6.97 -40.82 -0.28 6.58 16
41 H 0.39 7.50 8.55 -40.82 -0.35 7.15 16
42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16
43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
44 H 0.05 1.30 3.21 -51.93 -0.17 1.14 16
45 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16
46 H 0.05 1.14 5.64 -51.93 -0.29 0.84 16
47 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
LS Contribution 385.75 15.07 5.81 5.81
Total: -1.00 -36.13 385.75 -7.19 -43.32
By element:
Atomic # 1 Polarization: 16.39 SS G_CDS: -6.94 Total: 9.45 kcal
Atomic # 6 Polarization: 12.31 SS G_CDS: -1.78 Total: 10.53 kcal
Atomic # 7 Polarization: -62.25 SS G_CDS: 0.50 Total: -61.75 kcal
Atomic # 8 Polarization: -24.81 SS G_CDS: -0.63 Total: -25.44 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -4.15 Total: 18.08 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -36.13 -7.19 -43.32 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365538770.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.289 kcal
(2) G-P(sol) polarization free energy of solvation -36.133 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.844 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.035 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds