Wall clock time and date at job start Tue Mar 31 2020 21:32:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 O 1.45196 * 109.47016 * 2 1
4 4 C 1.34778 * 116.99511 * 180.02562 * 3 2 1
5 5 O 1.21544 * 120.00549 * 0.02562 * 4 3 2
6 6 C 1.47083 * 120.00126 * 179.97438 * 4 3 2
7 7 C 1.38201 * 126.46096 * 0.03133 * 6 4 3
8 8 N 1.34124 * 107.53280 * 179.97438 * 7 6 4
9 9 C 1.46501 * 125.66881 * 180.02562 * 8 7 6
10 10 C 1.52997 * 109.46845 * 124.99777 * 9 8 7
11 11 N 1.39922 * 108.66809 * 359.74841 * 8 7 6
12 12 C 1.30902 * 108.88219 * 0.42983 * 11 8 7
13 13 N 1.39783 * 126.07752 * 179.85293 * 12 11 8
14 14 C 1.34777 * 119.99895 * 359.40339 * 13 12 11
15 15 O 1.21593 * 119.99949 * 0.28290 * 14 13 12
16 16 N 1.34777 * 120.00128 * 180.28160 * 14 13 12
17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13
18 18 H 1.08993 * 109.47324 * 325.00194 * 17 16 14
19 19 C 1.50699 * 109.47054 * 204.99851 * 17 16 14
20 20 H 1.08004 * 119.99929 * 359.97438 * 19 17 16
21 21 C 1.37876 * 119.99861 * 180.02562 * 19 17 16
22 22 N 1.31518 * 120.00146 * 179.97438 * 21 19 17
23 23 Si 1.86801 * 120.00174 * 359.97438 * 21 19 17
24 24 H 1.48503 * 109.46912 * 90.00239 * 23 21 19
25 25 H 1.48506 * 109.47217 * 209.99960 * 23 21 19
26 26 H 1.48500 * 109.47225 * 330.00261 * 23 21 19
27 27 C 1.53008 * 109.47215 * 84.99926 * 17 16 14
28 28 C 1.53002 * 109.46836 * 295.00234 * 27 17 16
29 29 H 1.09006 * 109.46861 * 300.00164 * 1 2 3
30 30 H 1.08997 * 109.46949 * 59.99328 * 1 2 3
31 31 H 1.08994 * 109.47296 * 180.02562 * 1 2 3
32 32 H 1.09002 * 109.46389 * 239.99926 * 2 1 3
33 33 H 1.09001 * 109.46975 * 119.99918 * 2 1 3
34 34 H 1.08005 * 126.23476 * 359.95184 * 7 6 4
35 35 H 1.08993 * 109.47316 * 244.99808 * 9 8 7
36 36 H 1.09004 * 109.46508 * 5.00436 * 9 8 7
37 37 H 1.09003 * 109.47477 * 60.00689 * 10 9 8
38 38 H 1.09006 * 109.46750 * 180.02562 * 10 9 8
39 39 H 1.09001 * 109.47461 * 300.00077 * 10 9 8
40 40 H 0.97001 * 120.00316 * 179.69004 * 13 12 11
41 41 H 0.97000 * 119.99549 * 359.97438 * 16 14 13
42 42 H 0.97000 * 120.00515 * 179.97438 * 22 21 19
43 43 H 1.08996 * 109.46689 * 54.99465 * 27 17 16
44 44 H 1.08994 * 109.47098 * 175.00111 * 27 17 16
45 45 H 1.09002 * 109.46537 * 299.99451 * 28 27 17
46 46 H 1.08994 * 109.47377 * 60.00048 * 28 27 17
47 47 H 1.08995 * 109.46948 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3502 1.5454 -0.0005
5 8 4.0906 0.5816 -0.0015
6 6 3.9125 2.9045 -0.0011
7 6 3.1994 4.0884 -0.0006
8 7 4.0865 5.0944 -0.0009
9 6 3.7587 6.5223 0.0000
10 6 4.4520 7.2038 1.1814
11 7 5.3769 4.5536 0.0042
12 6 5.2890 3.2475 -0.0017
13 7 6.3609 2.3503 -0.0022
14 6 7.6268 2.8129 -0.0084
15 8 7.8365 4.0106 -0.0083
16 7 8.6603 1.9478 -0.0146
17 6 10.0363 2.4506 -0.0208
18 1 10.0858 3.3667 -0.6092
19 6 10.9470 1.4142 -0.6271
20 1 10.5415 0.4748 -0.9728
21 6 12.2982 1.6649 -0.7394
22 7 13.0931 0.7603 -1.2680
23 14 12.9997 3.2894 -0.1407
24 1 13.3944 3.1625 1.2853
25 1 14.1904 3.6442 -0.9542
26 1 11.9721 4.3527 -0.2772
27 6 10.4793 2.7418 1.4145
28 6 9.6345 3.8815 1.9876
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3633 -1.0276 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 2.1238 4.1857 -0.0004
35 1 4.1000 6.9740 -0.9314
36 1 2.6797 6.6472 0.0906
37 1 5.5311 7.0789 1.0909
38 1 4.2078 8.2662 1.1823
39 1 4.1107 6.7521 2.1129
40 1 6.1937 1.3949 -0.0024
41 1 8.4930 0.9923 -0.0143
42 1 14.0436 0.9367 -1.3474
43 1 10.3457 1.8484 2.0243
44 1 11.5302 3.0309 1.4188
45 1 9.7681 4.7749 1.3777
46 1 8.5836 3.5924 1.9834
47 1 9.9503 4.0893 3.0099
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001365538770.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:32:42
Heat of formation + Delta-G solvation = -55.900200 kcal
Electronic energy + Delta-G solvation = -29922.664179 eV
Core-core repulsion = 25721.049041 eV
Total energy + Delta-G solvation = -4201.615138 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.68313 -41.11923 -40.91056 -37.77039 -37.38809 -36.08102 -34.73076 -34.32339
-33.05523 -32.68126 -31.33676 -30.34987 -29.31902 -25.42524 -25.19591 -24.38496
-23.41338 -23.04471 -22.12498 -21.43031 -21.00596 -19.74614 -18.89964 -18.37401
-18.15440 -17.59001 -17.56797 -17.17759 -16.82665 -16.46693 -16.23306 -15.90649
-15.16622 -15.13799 -15.04612 -14.78171 -14.59680 -14.26063 -14.18948 -13.86555
-13.69418 -13.52573 -13.42628 -13.00278 -12.95605 -12.82968 -12.79257 -12.48036
-12.45478 -12.40005 -11.91798 -11.87396 -11.75549 -11.60155 -11.44445 -11.35905
-11.25995 -10.99420 -10.86765 -10.10439 -9.85926 -9.40184 -8.38711 -6.44614
0.34679 0.97504 1.08689 1.26942 1.34803 1.45832 1.58403 1.96824
2.00225 2.25930 2.42643 2.96698 3.15058 3.40163 3.82679 4.01870
4.10256 4.11511 4.17300 4.22012 4.26335 4.29342 4.31325 4.38628
4.42567 4.45144 4.56469 4.79448 4.82745 4.93266 4.96518 4.97179
5.01816 5.08375 5.18950 5.21920 5.29653 5.37681 5.45948 5.49637
5.56457 5.61945 5.79682 5.94561 6.18474 6.54420 6.60783 6.81466
7.09044 7.21286 7.56929 8.76643
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.003106 C = 0.002590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.695158 B = 9012.741301 C =10807.867394
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.055 3.945
3 O -0.348 6.348
4 C 0.552 3.448
5 O -0.555 6.555
6 C -0.333 4.333
7 C 0.177 3.823
8 N -0.347 5.347
9 C 0.120 3.880
10 C -0.164 4.164
11 N -0.321 5.321
12 C 0.354 3.646
13 N -0.645 5.645
14 C 0.692 3.308
15 O -0.579 6.579
16 N -0.711 5.711
17 C 0.270 3.730
18 H 0.024 0.976
19 C -0.535 4.535
20 H 0.055 0.945
21 C 0.031 3.969
22 N -0.933 5.933
23 Si 0.937 3.063
24 H -0.257 1.257
25 H -0.291 1.291
26 H -0.261 1.261
27 C -0.137 4.137
28 C -0.128 4.128
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.095 0.905
32 H 0.065 0.935
33 H 0.066 0.934
34 H 0.249 0.751
35 H 0.094 0.906
36 H 0.156 0.844
37 H 0.034 0.966
38 H 0.104 0.896
39 H 0.058 0.942
40 H 0.428 0.572
41 H 0.402 0.598
42 H 0.271 0.729
43 H 0.068 0.932
44 H 0.048 0.952
45 H 0.037 0.963
46 H 0.045 0.955
47 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.314 7.990 5.356 32.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.019 4.019
3 O -0.265 6.265
4 C 0.399 3.601
5 O -0.447 6.447
6 C -0.349 4.349
7 C 0.022 3.978
8 N -0.124 5.124
9 C 0.002 3.998
10 C -0.222 4.222
11 N -0.151 5.151
12 C 0.095 3.905
13 N -0.300 5.300
14 C 0.391 3.609
15 O -0.455 6.455
16 N -0.364 5.364
17 C 0.165 3.835
18 H 0.042 0.958
19 C -0.573 4.573
20 H 0.073 0.927
21 C -0.169 4.169
22 N -0.572 5.572
23 Si 0.764 3.236
24 H -0.183 1.183
25 H -0.218 1.218
26 H -0.185 1.185
27 C -0.176 4.176
28 C -0.185 4.185
29 H 0.091 0.909
30 H 0.091 0.909
31 H 0.114 0.886
32 H 0.083 0.917
33 H 0.084 0.916
34 H 0.265 0.735
35 H 0.112 0.888
36 H 0.174 0.826
37 H 0.053 0.947
38 H 0.123 0.877
39 H 0.077 0.923
40 H 0.268 0.732
41 H 0.237 0.763
42 H 0.080 0.920
43 H 0.087 0.913
44 H 0.066 0.934
45 H 0.056 0.944
46 H 0.064 0.936
47 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -29.871 9.855 5.307 31.899
hybrid contribution 0.650 -1.618 -0.059 1.745
sum -29.221 8.236 5.247 30.810
Atomic orbital electron populations
1.21810 0.90005 1.04280 1.03963 1.23288 0.97123 0.79057 1.02432
1.86498 1.22113 1.33568 1.84287 1.19886 0.80906 0.87865 0.71427
1.90770 1.61124 1.43086 1.49719 1.19051 0.90132 0.92428 1.33241
1.23899 0.98991 0.84360 0.90597 1.48963 1.02772 1.08550 1.52126
1.22357 1.03922 0.72372 1.01192 1.22023 1.00419 1.02340 0.97376
1.78043 0.99670 1.06584 1.30755 1.19098 0.86266 0.89090 0.96064
1.42181 1.01976 1.09831 1.76015 1.16119 0.80568 0.85785 0.78401
1.90954 1.83624 1.14334 1.56539 1.45149 1.04981 1.09008 1.77250
1.18703 0.77482 0.94337 0.92929 0.95813 1.21252 0.92557 1.02693
1.40782 0.92660 1.25531 0.97063 0.99715 0.94568 1.69974 1.05347
1.36242 1.45625 0.86023 0.77969 0.80938 0.78659 1.18287 1.21844
1.18522 1.22227 0.98355 0.98774 0.98199 1.21690 0.99486 0.97809
0.99549 0.90885 0.90948 0.88602 0.91688 0.91574 0.73506 0.88804
0.82634 0.94700 0.87701 0.92279 0.73173 0.76284 0.91975 0.91337
0.93399 0.94408 0.93559 0.92335
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.12 10.29 71.98 0.74 -0.38 16
2 C 0.05 0.82 6.20 71.98 0.45 1.27 16
3 O -0.35 -6.51 10.05 -56.89 -0.57 -7.08 16
4 C 0.55 14.02 7.95 70.14 0.56 14.58 16
5 O -0.55 -17.28 14.99 19.69 0.30 -16.99 16
6 C -0.33 -8.49 6.14 -20.07 -0.12 -8.62 16
7 C 0.18 2.84 11.27 84.33 0.95 3.79 16
8 N -0.35 -7.15 3.65 -346.27 -1.26 -8.41 16
9 C 0.12 1.31 7.20 86.38 0.62 1.93 16
10 C -0.16 -2.31 10.08 71.98 0.73 -1.58 16
11 N -0.32 -10.92 10.54 -53.89 -0.57 -11.49 16
12 C 0.35 12.05 7.79 133.92 1.04 13.09 16
13 N -0.64 -23.78 5.42 -320.58 -1.74 -25.52 16
14 C 0.69 29.96 7.10 179.05 1.27 31.23 16
15 O -0.58 -28.33 12.20 -4.01 -0.05 -28.38 16
16 N -0.71 -31.20 5.03 -461.40 -2.32 -33.52 16
17 C 0.27 13.60 1.83 44.25 0.08 13.68 16
18 H 0.02 1.34 6.63 -2.39 -0.02 1.32 16
19 C -0.53 -30.48 9.31 25.60 0.24 -30.24 16
20 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16
21 C 0.03 1.81 5.45 84.65 0.46 2.27 16
22 N -0.93 -57.43 13.96 21.45 0.30 -57.13 16
23 Si 0.94 46.15 24.41 68.60 1.67 47.82 16
24 H -0.26 -11.86 6.83 99.48 0.68 -11.18 16
25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
26 H -0.26 -12.84 6.53 99.48 0.65 -12.19 16
27 C -0.14 -6.28 5.11 30.60 0.16 -6.12 16
28 C -0.13 -5.40 8.51 71.98 0.61 -4.78 16
29 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16
30 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16
31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
34 H 0.25 0.88 8.06 -2.91 -0.02 0.85 16
35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16
36 H 0.16 0.01 8.06 -2.38 -0.02 -0.01 16
37 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16
38 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16
39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
40 H 0.43 14.51 6.97 -92.71 -0.65 13.86 16
41 H 0.40 15.97 8.55 -92.71 -0.79 15.18 16
42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16
43 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16
44 H 0.05 2.25 3.21 -2.39 -0.01 2.25 16
45 H 0.04 1.69 7.84 -2.39 -0.02 1.67 16
46 H 0.05 2.00 5.64 -2.39 -0.01 1.98 16
47 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
Total: -1.00 -83.13 385.75 3.03 -80.10
By element:
Atomic # 1 Polarization: 31.00 SS G_CDS: -0.51 Total: 30.49 kcal
Atomic # 6 Polarization: 22.33 SS G_CDS: 7.78 Total: 30.11 kcal
Atomic # 7 Polarization: -130.48 SS G_CDS: -5.59 Total: -136.06 kcal
Atomic # 8 Polarization: -52.12 SS G_CDS: -0.33 Total: -52.45 kcal
Atomic # 14 Polarization: 46.15 SS G_CDS: 1.67 Total: 47.82 kcal
Total: -83.13 3.03 -80.10 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365538770.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.196 kcal
(2) G-P(sol) polarization free energy of solvation -83.131 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.096 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds