Wall clock time and date at job start Tue Mar 31 2020 21:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45208 * 109.47048 * 2 1 4 4 C 1.34778 * 116.99841 * 180.02562 * 3 2 1 5 5 O 1.21550 * 120.00197 * 0.02562 * 4 3 2 6 6 C 1.47081 * 119.99745 * 179.97438 * 4 3 2 7 7 C 1.38193 * 126.46201 * 0.03138 * 6 4 3 8 8 N 1.34138 * 107.52854 * 179.97438 * 7 6 4 9 9 C 1.46492 * 125.66575 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47260 * 124.99656 * 9 8 7 11 11 N 1.39913 * 108.66872 * 359.75271 * 8 7 6 12 12 C 1.30903 * 108.88744 * 0.42243 * 11 8 7 13 13 N 1.39783 * 126.08190 * 179.85048 * 12 11 8 14 14 C 1.34775 * 119.99753 * 359.69396 * 13 12 11 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 H 1.08999 * 109.47480 * 35.27807 * 17 16 14 19 19 C 1.50696 * 109.47278 * 155.27952 * 17 16 14 20 20 H 1.08002 * 120.00157 * 359.97438 * 19 17 16 21 21 C 1.37881 * 120.00447 * 179.97438 * 19 17 16 22 22 N 1.31510 * 119.99635 * 359.97438 * 21 19 17 23 23 Si 1.86792 * 120.00210 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47212 * 89.99990 * 23 21 19 25 25 H 1.48498 * 109.47421 * 210.00302 * 23 21 19 26 26 H 1.48504 * 109.47342 * 330.00327 * 23 21 19 27 27 C 1.53008 * 109.47014 * 275.27733 * 17 16 14 28 28 C 1.52999 * 109.47188 * 65.00471 * 27 17 16 29 29 H 1.09005 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47010 * 300.00073 * 1 2 3 31 31 H 1.08997 * 109.47748 * 59.99803 * 1 2 3 32 32 H 1.09002 * 109.47187 * 240.00403 * 2 1 3 33 33 H 1.09001 * 109.47125 * 119.99827 * 2 1 3 34 34 H 1.07995 * 126.23694 * 359.93866 * 7 6 4 35 35 H 1.08999 * 109.47351 * 245.00455 * 9 8 7 36 36 H 1.09003 * 109.47201 * 4.99899 * 9 8 7 37 37 H 1.09006 * 109.47253 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47590 * 300.00652 * 10 9 8 39 39 H 1.09003 * 109.46815 * 60.00007 * 10 9 8 40 40 H 0.97000 * 119.99724 * 179.68930 * 13 12 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00295 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.46580 * 185.00009 * 27 17 16 44 44 H 1.08993 * 109.47190 * 304.99657 * 27 17 16 45 45 H 1.08995 * 109.47136 * 180.02562 * 28 27 17 46 46 H 1.09001 * 109.46778 * 299.99805 * 28 27 17 47 47 H 1.08998 * 109.47035 * 59.99571 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3501 1.5456 -0.0005 5 8 4.0906 0.5817 -0.0015 6 6 3.9122 2.9048 -0.0011 7 6 3.1991 4.0885 -0.0006 8 7 4.0862 5.0946 -0.0009 9 6 3.7584 6.5224 0.0000 10 6 4.4515 7.2041 1.1814 11 7 5.3766 4.5539 0.0041 12 6 5.2888 3.2478 -0.0017 13 7 6.3608 2.3507 -0.0023 14 6 7.6266 2.8133 -0.0028 15 8 7.8362 4.0109 -0.0032 16 7 8.6601 1.9482 -0.0029 17 6 10.0361 2.4511 -0.0095 18 1 10.0915 3.3661 0.5802 19 6 10.9529 1.4137 0.5856 20 1 10.5509 0.4739 0.9344 21 6 12.3052 1.6641 0.6850 22 7 12.7949 2.8082 0.2598 23 14 13.4414 0.3785 1.4233 24 1 13.9388 -0.5181 0.3491 25 1 14.5916 1.0519 2.0782 26 1 12.6972 -0.4205 2.4298 27 6 10.4647 2.7450 -1.4486 28 6 9.6143 3.8857 -2.0112 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1235 4.1857 -0.0006 35 1 4.0995 6.9741 -0.9315 36 1 2.6793 6.6474 0.0905 37 1 4.2080 8.2666 1.1818 38 1 4.1104 6.7523 2.1129 39 1 5.5306 7.0791 1.0909 40 1 6.1935 1.3952 -0.0024 41 1 8.4930 0.9927 -0.0030 42 1 13.7461 2.9847 0.3300 43 1 11.5156 3.0342 -1.4628 44 1 10.3252 1.8527 -2.0588 45 1 9.9193 4.0948 -3.0365 46 1 8.5634 3.5966 -1.9969 47 1 9.7539 4.7780 -1.4009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365538771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:47 Heat of formation + Delta-G solvation = -38.131698 kcal Electronic energy + Delta-G solvation = -29811.843078 eV Core-core repulsion = 25610.998440 eV Total energy + Delta-G solvation = -4200.844638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56781 -39.99403 -39.27800 -36.63455 -35.64653 -34.58662 -33.40982 -32.27522 -32.02573 -30.80243 -30.25567 -29.24587 -26.84646 -24.60350 -23.91303 -22.98001 -22.44298 -21.73607 -20.70003 -19.68034 -19.32167 -18.08578 -17.67863 -17.31610 -16.67187 -16.34105 -15.94516 -15.77237 -15.45468 -15.02798 -14.65704 -14.30083 -13.98838 -13.94914 -13.74772 -13.41953 -13.15767 -13.01412 -12.76243 -12.58040 -12.31221 -12.17446 -12.07802 -11.82563 -11.61993 -11.47812 -11.18808 -10.92726 -10.82347 -10.78510 -10.69094 -10.52131 -10.40986 -10.23896 -10.09835 -9.53801 -9.23316 -8.96006 -8.94116 -8.44247 -8.25010 -7.68895 -6.06673 -4.15335 1.25558 2.10938 2.22642 2.60190 3.14463 3.26540 3.28905 3.35742 3.39549 4.12360 4.20222 4.37553 4.49678 4.68266 4.69723 4.74173 4.81447 4.95533 4.98920 5.03982 5.17748 5.25197 5.26886 5.41346 5.49451 5.51516 5.59764 5.66996 5.84010 6.06917 6.34599 6.49202 6.57575 6.71908 6.75552 6.92185 7.07095 7.20230 7.33859 7.47044 7.54421 7.67985 7.73692 7.80314 7.96347 8.13863 8.25768 8.81609 8.94312 9.35971 9.53707 10.98787 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.002984 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.159177 B = 9380.382963 C =11160.408900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.359 6.359 4 C 0.550 3.450 5 O -0.523 6.523 6 C -0.313 4.313 7 C 0.140 3.860 8 N -0.351 5.351 9 C 0.130 3.870 10 C -0.168 4.168 11 N -0.271 5.271 12 C 0.385 3.615 13 N -0.652 5.652 14 C 0.686 3.314 15 O -0.548 6.548 16 N -0.718 5.718 17 C 0.288 3.712 18 H 0.050 0.950 19 C -0.532 4.532 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.882 5.882 23 Si 0.902 3.098 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.129 4.129 28 C -0.135 4.135 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.190 0.810 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.420 0.580 41 H 0.386 0.614 42 H 0.264 0.736 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.020 0.980 46 H 0.038 0.962 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.316 1.847 -1.120 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.277 6.277 4 C 0.396 3.604 5 O -0.413 6.413 6 C -0.328 4.328 7 C -0.016 4.016 8 N -0.128 5.128 9 C 0.009 3.991 10 C -0.226 4.226 11 N -0.101 5.101 12 C 0.124 3.876 13 N -0.308 5.308 14 C 0.385 3.615 15 O -0.421 6.421 16 N -0.370 5.370 17 C 0.186 3.814 18 H 0.068 0.932 19 C -0.571 4.571 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.729 3.271 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.168 4.168 28 C -0.192 4.192 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.207 0.793 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.260 0.740 41 H 0.219 0.781 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.057 0.943 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.797 3.878 -1.122 25.123 hybrid contribution -0.120 -2.498 0.317 2.521 sum -24.917 1.380 -0.805 24.968 Atomic orbital electron populations 1.21802 0.92779 1.02917 1.03382 1.22990 0.95050 0.80219 1.02780 1.86515 1.23989 1.32213 1.84937 1.19864 0.80155 0.88283 0.72107 1.90786 1.60206 1.42138 1.48144 1.18920 0.91395 0.90864 1.31666 1.23106 0.97147 0.86531 0.94773 1.48657 1.04331 1.06723 1.53136 1.21835 1.00682 0.74941 1.01621 1.22065 1.03372 1.00193 0.96931 1.78238 0.95466 1.06185 1.30174 1.18830 0.85459 0.88898 0.94387 1.42556 1.02717 1.09071 1.76430 1.16181 0.79725 0.86550 0.79026 1.90983 1.82734 1.13201 1.55155 1.45795 1.06634 1.08000 1.76541 1.18721 0.73517 0.95752 0.93409 0.93191 1.21242 0.92223 1.02298 1.41306 0.92030 1.24872 0.97925 0.95659 0.95227 1.69900 1.13596 1.22598 1.45902 0.86446 0.80184 0.81202 0.79248 1.20580 1.21126 1.19866 1.21964 1.02431 0.95406 0.96959 1.21809 0.99406 1.00158 0.97827 0.90309 0.91545 0.91542 0.91175 0.91169 0.79304 0.89053 0.88344 0.90629 0.92061 0.90168 0.74037 0.78140 0.92607 0.88268 0.95075 0.96104 0.94278 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.15 0.38 -0.45 16 2 C 0.06 0.54 6.20 37.15 0.23 0.77 16 3 O -0.36 -3.87 10.05 -40.70 -0.41 -4.28 16 4 C 0.55 7.48 7.95 34.32 0.27 7.75 16 5 O -0.52 -8.25 14.99 -19.31 -0.29 -8.54 16 6 C -0.31 -4.38 6.14 -104.94 -0.64 -5.02 16 7 C 0.14 1.45 11.27 -16.56 -0.19 1.27 16 8 N -0.35 -4.27 3.65 -60.80 -0.22 -4.49 16 9 C 0.13 1.01 7.20 -4.05 -0.03 0.98 16 10 C -0.17 -1.46 10.08 37.16 0.37 -1.08 16 11 N -0.27 -4.84 10.54 31.62 0.33 -4.51 16 12 C 0.39 6.80 7.79 -154.45 -1.20 5.59 16 13 N -0.65 -12.20 5.42 -15.30 -0.08 -12.28 16 14 C 0.69 15.17 7.09 -86.92 -0.62 14.56 16 15 O -0.55 -13.78 12.18 5.29 0.06 -13.72 16 16 N -0.72 -15.98 5.03 -59.81 -0.30 -16.28 16 17 C 0.29 7.51 2.24 -69.08 -0.15 7.35 16 18 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 19 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 22 N -0.88 -25.14 11.29 55.43 0.63 -24.52 16 23 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 C -0.13 -3.25 5.45 -26.73 -0.15 -3.40 16 28 C -0.13 -3.19 8.51 37.16 0.32 -2.88 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.36 8.06 -51.93 -0.42 -0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.42 7.14 6.97 -40.82 -0.28 6.85 16 41 H 0.39 7.60 8.55 -40.82 -0.35 7.26 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 44 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.93 5.63 -51.93 -0.29 0.63 16 47 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -35.07 392.46 -8.25 -43.32 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.07 Total: 10.91 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -1.80 Total: 12.45 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.35 Total: -62.08 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.63 Total: -26.54 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.07 -8.25 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365538771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.193 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds