Wall clock time and date at job start Tue Mar 31 2020 21:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45208 * 109.47048 * 2 1 4 4 C 1.34778 * 116.99841 * 180.02562 * 3 2 1 5 5 O 1.21550 * 120.00197 * 0.02562 * 4 3 2 6 6 C 1.47081 * 119.99745 * 179.97438 * 4 3 2 7 7 C 1.38193 * 126.46201 * 0.03138 * 6 4 3 8 8 N 1.34138 * 107.52854 * 179.97438 * 7 6 4 9 9 C 1.46492 * 125.66575 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47260 * 124.99656 * 9 8 7 11 11 N 1.39913 * 108.66872 * 359.75271 * 8 7 6 12 12 C 1.30903 * 108.88744 * 0.42243 * 11 8 7 13 13 N 1.39783 * 126.08190 * 179.85048 * 12 11 8 14 14 C 1.34775 * 119.99753 * 359.69396 * 13 12 11 15 15 O 1.21583 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99585 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 H 1.08999 * 109.47480 * 35.27807 * 17 16 14 19 19 C 1.50696 * 109.47278 * 155.27952 * 17 16 14 20 20 H 1.08002 * 120.00157 * 359.97438 * 19 17 16 21 21 C 1.37881 * 120.00447 * 179.97438 * 19 17 16 22 22 N 1.31510 * 119.99635 * 359.97438 * 21 19 17 23 23 Si 1.86792 * 120.00210 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47212 * 89.99990 * 23 21 19 25 25 H 1.48498 * 109.47421 * 210.00302 * 23 21 19 26 26 H 1.48504 * 109.47342 * 330.00327 * 23 21 19 27 27 C 1.53008 * 109.47014 * 275.27733 * 17 16 14 28 28 C 1.52999 * 109.47188 * 65.00471 * 27 17 16 29 29 H 1.09005 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47010 * 300.00073 * 1 2 3 31 31 H 1.08997 * 109.47748 * 59.99803 * 1 2 3 32 32 H 1.09002 * 109.47187 * 240.00403 * 2 1 3 33 33 H 1.09001 * 109.47125 * 119.99827 * 2 1 3 34 34 H 1.07995 * 126.23694 * 359.93866 * 7 6 4 35 35 H 1.08999 * 109.47351 * 245.00455 * 9 8 7 36 36 H 1.09003 * 109.47201 * 4.99899 * 9 8 7 37 37 H 1.09006 * 109.47253 * 179.97438 * 10 9 8 38 38 H 1.08999 * 109.47590 * 300.00652 * 10 9 8 39 39 H 1.09003 * 109.46815 * 60.00007 * 10 9 8 40 40 H 0.97000 * 119.99724 * 179.68930 * 13 12 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00295 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.46580 * 185.00009 * 27 17 16 44 44 H 1.08993 * 109.47190 * 304.99657 * 27 17 16 45 45 H 1.08995 * 109.47136 * 180.02562 * 28 27 17 46 46 H 1.09001 * 109.46778 * 299.99805 * 28 27 17 47 47 H 1.08998 * 109.47035 * 59.99571 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3501 1.5456 -0.0005 5 8 4.0906 0.5817 -0.0015 6 6 3.9122 2.9048 -0.0011 7 6 3.1991 4.0885 -0.0006 8 7 4.0862 5.0946 -0.0009 9 6 3.7584 6.5224 0.0000 10 6 4.4515 7.2041 1.1814 11 7 5.3766 4.5539 0.0041 12 6 5.2888 3.2478 -0.0017 13 7 6.3608 2.3507 -0.0023 14 6 7.6266 2.8133 -0.0028 15 8 7.8362 4.0109 -0.0032 16 7 8.6601 1.9482 -0.0029 17 6 10.0361 2.4511 -0.0095 18 1 10.0915 3.3661 0.5802 19 6 10.9529 1.4137 0.5856 20 1 10.5509 0.4739 0.9344 21 6 12.3052 1.6641 0.6850 22 7 12.7949 2.8082 0.2598 23 14 13.4414 0.3785 1.4233 24 1 13.9388 -0.5181 0.3491 25 1 14.5916 1.0519 2.0782 26 1 12.6972 -0.4205 2.4298 27 6 10.4647 2.7450 -1.4486 28 6 9.6143 3.8857 -2.0112 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1235 4.1857 -0.0006 35 1 4.0995 6.9741 -0.9315 36 1 2.6793 6.6474 0.0905 37 1 4.2080 8.2666 1.1818 38 1 4.1104 6.7523 2.1129 39 1 5.5306 7.0791 1.0909 40 1 6.1935 1.3952 -0.0024 41 1 8.4930 0.9927 -0.0030 42 1 13.7461 2.9847 0.3300 43 1 11.5156 3.0342 -1.4628 44 1 10.3252 1.8527 -2.0588 45 1 9.9193 4.0948 -3.0365 46 1 8.5634 3.5966 -1.9969 47 1 9.7539 4.7780 -1.4009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365538771.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:46 Heat of formation + Delta-G solvation = -61.841069 kcal Electronic energy + Delta-G solvation = -29812.871194 eV Core-core repulsion = 25610.998440 eV Total energy + Delta-G solvation = -4201.872754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.66411 -41.04340 -40.87714 -37.68042 -37.26928 -36.04232 -34.71019 -34.16355 -32.78657 -32.57221 -31.32396 -30.31377 -28.85508 -25.44055 -25.34626 -24.49589 -23.35275 -22.95440 -21.95698 -21.30390 -20.95400 -19.60138 -18.87560 -18.36628 -17.89505 -17.56821 -17.40814 -16.96170 -16.77633 -16.55473 -16.20843 -15.71589 -15.22272 -15.09295 -14.80318 -14.58094 -14.52142 -14.30330 -14.01677 -13.61519 -13.52026 -13.38050 -13.18758 -12.97438 -12.89761 -12.82576 -12.67474 -12.46912 -12.39832 -12.20014 -12.08607 -11.91762 -11.75164 -11.58396 -11.53413 -11.43982 -11.07443 -10.94801 -10.54163 -10.07888 -9.75309 -9.35212 -8.16349 -6.33473 0.35358 1.00053 1.12270 1.44663 1.45538 1.55767 1.61341 2.00056 2.03592 2.41901 2.48683 3.12683 3.22599 3.46287 3.83990 4.02170 4.10622 4.11199 4.17762 4.27562 4.31881 4.38713 4.45400 4.48209 4.55370 4.56917 4.73971 4.82007 4.92602 4.95917 5.02151 5.05160 5.19730 5.22604 5.29516 5.42510 5.45914 5.51960 5.58807 5.60419 5.71409 5.83932 5.95390 6.04918 6.15743 6.62958 6.73833 6.82105 7.21373 7.34319 7.67705 8.89475 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011634 B = 0.002984 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.159177 B = 9380.382963 C =11160.408900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.348 6.348 4 C 0.553 3.447 5 O -0.554 6.554 6 C -0.334 4.334 7 C 0.177 3.823 8 N -0.347 5.347 9 C 0.120 3.880 10 C -0.165 4.165 11 N -0.325 5.325 12 C 0.354 3.646 13 N -0.645 5.645 14 C 0.687 3.313 15 O -0.583 6.583 16 N -0.715 5.715 17 C 0.298 3.702 18 H 0.000 1.000 19 C -0.549 4.549 20 H 0.070 0.930 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.973 3.027 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.267 1.267 27 C -0.120 4.120 28 C -0.118 4.118 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.250 0.750 35 H 0.094 0.906 36 H 0.157 0.843 37 H 0.106 0.894 38 H 0.057 0.943 39 H 0.031 0.969 40 H 0.427 0.573 41 H 0.400 0.600 42 H 0.266 0.734 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.035 0.965 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.576 1.321 -1.271 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.265 6.265 4 C 0.400 3.600 5 O -0.447 6.447 6 C -0.349 4.349 7 C 0.021 3.979 8 N -0.125 5.125 9 C 0.002 3.998 10 C -0.222 4.222 11 N -0.154 5.154 12 C 0.094 3.906 13 N -0.301 5.301 14 C 0.387 3.613 15 O -0.458 6.458 16 N -0.368 5.368 17 C 0.195 3.805 18 H 0.018 0.982 19 C -0.587 4.587 20 H 0.088 0.912 21 C -0.183 4.183 22 N -0.552 5.552 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.191 1.191 27 C -0.159 4.159 28 C -0.175 4.175 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.266 0.734 35 H 0.112 0.888 36 H 0.175 0.825 37 H 0.124 0.876 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.268 0.732 41 H 0.234 0.766 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -28.133 3.346 -1.277 28.360 hybrid contribution 0.723 -2.220 0.378 2.365 sum -27.410 1.126 -0.898 27.448 Atomic orbital electron populations 1.21810 0.90008 1.04290 1.03952 1.23292 0.97117 0.79042 1.02449 1.86502 1.22072 1.33604 1.84293 1.19854 0.80908 0.87802 0.71416 1.90764 1.61126 1.43038 1.49747 1.19057 0.90040 0.92501 1.33307 1.23910 0.98983 0.84357 0.90640 1.48971 1.02783 1.08568 1.52142 1.22349 1.03919 0.72410 1.01105 1.22027 1.00320 1.02416 0.97460 1.78074 0.99671 1.06780 1.30855 1.19142 0.86380 0.89094 0.95943 1.42229 1.01994 1.09716 1.76152 1.16227 0.80629 0.85921 0.78532 1.90954 1.83603 1.14677 1.56582 1.45475 1.05668 1.08716 1.76978 1.18308 0.75365 0.93788 0.93037 0.98213 1.21547 0.92816 1.02686 1.41687 0.91182 1.25762 0.99475 0.97661 0.95449 1.70047 1.13988 1.24449 1.46711 0.85335 0.77819 0.78511 0.78597 1.19561 1.21038 1.19111 1.21810 1.01188 0.96158 0.96784 1.21612 0.98871 0.98461 0.98554 0.88558 0.90960 0.90913 0.91571 0.91633 0.73421 0.88774 0.82495 0.87591 0.92340 0.94968 0.73247 0.76610 0.92492 0.90560 0.94147 0.93684 0.94605 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.83 6.20 71.98 0.45 1.28 16 3 O -0.35 -6.70 10.05 -56.89 -0.57 -7.27 16 4 C 0.55 14.48 7.95 70.14 0.56 15.03 16 5 O -0.55 -17.57 14.99 19.67 0.29 -17.28 16 6 C -0.33 -8.96 6.14 -20.07 -0.12 -9.08 16 7 C 0.18 3.07 11.27 84.33 0.95 4.02 16 8 N -0.35 -7.79 3.65 -346.28 -1.26 -9.06 16 9 C 0.12 1.52 7.20 86.38 0.62 2.14 16 10 C -0.16 -2.69 10.08 71.98 0.73 -1.96 16 11 N -0.32 -11.83 10.54 -53.88 -0.57 -12.40 16 12 C 0.35 12.76 7.79 133.92 1.04 13.80 16 13 N -0.65 -25.15 5.42 -320.58 -1.74 -26.88 16 14 C 0.69 31.94 7.09 179.05 1.27 33.21 16 15 O -0.58 -31.11 12.18 -3.98 -0.05 -31.16 16 16 N -0.72 -33.17 5.03 -461.41 -2.32 -35.49 16 17 C 0.30 16.27 2.24 44.25 0.10 16.37 16 18 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 19 C -0.55 -30.38 8.73 25.60 0.22 -30.15 16 20 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 21 C 0.02 0.93 5.29 84.66 0.45 1.38 16 22 N -0.91 -53.55 11.29 21.45 0.24 -53.31 16 23 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 C -0.12 -6.29 5.45 30.60 0.17 -6.12 16 28 C -0.12 -5.76 8.51 71.98 0.61 -5.15 16 29 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.25 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.16 0.22 8.06 -2.39 -0.02 0.20 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.43 15.08 6.97 -92.71 -0.65 14.44 16 41 H 0.40 16.18 8.55 -92.71 -0.79 15.39 16 42 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.08 4.37 5.95 -2.39 -0.01 4.36 16 44 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 46 H 0.03 1.75 5.63 -2.39 -0.01 1.74 16 47 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 Total: -1.00 -82.50 392.46 3.40 -79.09 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.43 Total: 33.96 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 7.78 Total: 34.34 kcal Atomic # 7 Polarization: -131.49 SS G_CDS: -5.65 Total: -137.14 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: -0.33 Total: -55.71 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -82.50 3.40 -79.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365538771.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.254 kcal (2) G-P(sol) polarization free energy of solvation -82.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds