Wall clock time and date at job start Tue Mar 31 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34782 * 116.99826 * 2 1 4 4 O 1.21554 * 119.99849 * 359.97438 * 3 2 1 5 5 C 1.47071 * 120.00173 * 179.97438 * 3 2 1 6 6 C 1.38198 * 126.46092 * 0.02835 * 5 3 2 7 7 N 1.34130 * 107.53011 * 179.97438 * 6 5 3 8 8 C 1.46505 * 125.66682 * 179.97438 * 7 6 5 9 9 N 1.39910 * 108.66786 * 359.75763 * 7 6 5 10 10 C 1.30897 * 108.89131 * 0.41845 * 9 7 6 11 11 N 1.39779 * 126.08544 * 179.85192 * 10 9 7 12 12 C 1.34773 * 120.00002 * 359.69444 * 11 10 9 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00097 * 179.72685 * 12 11 10 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46866 * 299.99525 * 16 15 14 18 18 C 1.52994 * 109.47172 * 59.99462 * 16 15 14 19 19 C 1.53000 * 109.46988 * 179.97438 * 16 15 14 20 20 C 1.50701 * 109.46983 * 179.97438 * 19 16 15 21 21 H 1.08000 * 119.99624 * 359.97438 * 20 19 16 22 22 C 1.37872 * 119.99634 * 179.97438 * 20 19 16 23 23 N 1.31520 * 119.99520 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00320 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46712 * 90.00023 * 24 22 20 26 26 H 1.48502 * 109.47295 * 209.99407 * 24 22 20 27 27 H 1.48499 * 109.47159 * 330.00030 * 24 22 20 28 28 H 1.09010 * 109.47075 * 60.00116 * 1 2 3 29 29 H 1.08998 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47537 * 300.00442 * 1 2 3 31 31 H 1.08002 * 126.23810 * 359.95809 * 6 5 3 32 32 H 1.09005 * 109.46352 * 89.99922 * 8 7 6 33 33 H 1.08996 * 109.47501 * 210.00449 * 8 7 6 34 34 H 1.09002 * 109.47009 * 330.01017 * 8 7 6 35 35 H 0.97000 * 119.99886 * 179.68950 * 11 10 9 36 36 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 37 37 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 38 38 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 39 39 H 1.09007 * 109.47177 * 60.00009 * 17 16 15 40 40 H 1.08994 * 109.47297 * 180.02562 * 17 16 15 41 41 H 1.08997 * 109.47361 * 300.00353 * 17 16 15 42 42 H 1.09006 * 109.47135 * 60.00046 * 18 16 15 43 43 H 1.09001 * 109.47144 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.47717 * 300.00195 * 18 16 15 45 45 H 1.08998 * 109.46983 * 299.99930 * 19 16 15 46 46 H 1.08997 * 109.47123 * 59.99717 * 19 16 15 47 47 H 0.97003 * 119.99577 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5326 1.2780 0.0006 6 6 4.4109 0.2111 0.0006 7 7 5.6552 0.7121 0.0006 8 6 6.8922 -0.0729 0.0012 9 7 5.5754 2.1089 -0.0050 10 6 4.3149 2.4615 0.0007 11 7 3.8263 3.7711 0.0007 12 6 4.6843 4.8105 0.0007 13 8 5.8834 4.6089 0.0012 14 7 4.2132 6.0732 -0.0048 15 6 5.1459 7.2029 -0.0109 16 6 4.3582 8.5146 -0.0171 17 6 3.4768 8.5743 -1.2663 18 6 3.4778 8.5867 1.2321 19 6 5.3323 9.6945 -0.0228 20 6 4.5564 10.9864 -0.0295 21 1 3.4766 10.9677 -0.0301 22 6 5.2252 12.1920 -0.0348 23 7 4.5480 13.3195 -0.0412 24 14 7.0929 12.2242 -0.0345 25 1 7.5881 12.2263 -1.4346 26 1 7.5668 13.4483 0.6599 27 1 7.6085 11.0236 0.6712 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.1442 -0.8355 0.0008 32 1 7.1990 -0.2679 -1.0264 33 1 7.6757 0.4840 0.5150 34 1 6.7219 -1.0189 0.5152 35 1 2.8697 3.9319 0.0006 36 1 3.2566 6.2340 -0.0049 37 1 5.7742 7.1602 0.8788 38 1 5.7728 7.1518 -0.9011 39 1 2.7829 7.7336 -1.2618 40 1 2.9160 9.5088 -1.2710 41 1 4.1040 8.5229 -2.1563 42 1 4.1058 8.5441 2.1221 43 1 2.9170 9.5213 1.2280 44 1 2.7839 7.7461 1.2367 45 1 5.9599 9.6517 0.8674 46 1 5.9598 9.6433 -0.9125 47 1 5.0185 14.1678 -0.0446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413659170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:47 Heat of formation + Delta-G solvation = -34.481324 kcal Electronic energy + Delta-G solvation = -29225.800514 eV Core-core repulsion = 25025.114168 eV Total energy + Delta-G solvation = -4200.686346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89005 -40.19669 -39.88792 -37.41700 -36.65669 -35.08192 -33.69510 -32.64637 -31.94765 -30.96889 -28.16712 -27.82878 -27.13402 -26.50619 -25.98533 -23.44015 -22.83788 -21.88208 -20.86961 -20.13516 -18.67248 -18.27529 -17.57131 -17.41562 -16.83114 -16.71930 -16.58783 -15.99095 -15.82766 -15.32618 -14.84734 -14.37119 -14.10707 -13.97566 -13.89996 -13.62074 -13.47475 -13.37327 -13.14806 -13.04549 -12.67061 -12.37908 -12.34527 -12.23421 -11.26688 -11.20480 -11.12670 -11.10300 -10.97735 -10.95789 -10.78205 -10.57573 -10.44607 -10.04560 -9.92906 -9.71679 -9.48947 -9.30729 -8.95983 -8.89340 -8.51184 -8.49888 -6.01123 -3.98139 0.96999 1.79029 1.83954 2.36542 2.79188 2.80276 3.34497 3.42288 3.46854 3.46949 3.94395 4.16017 4.39741 4.48800 4.68913 4.75088 4.79223 4.87878 4.92126 4.96737 5.06447 5.22335 5.31698 5.35869 5.45246 5.58129 5.68750 6.04362 6.16669 6.16952 6.19189 6.37644 6.38575 6.48425 6.51888 6.64550 6.72127 6.74790 6.95275 7.06280 7.09610 7.24167 7.36750 7.40680 7.53093 7.81370 8.04599 8.55900 8.63027 9.03210 9.61655 11.11606 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.002302 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.010395 B =12160.796248 C =13532.812274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.548 3.452 4 O -0.522 6.522 5 C -0.310 4.310 6 C 0.145 3.855 7 N -0.353 5.353 8 C 0.097 3.903 9 N -0.276 5.276 10 C 0.382 3.618 11 N -0.647 5.647 12 C 0.694 3.306 13 O -0.550 6.550 14 N -0.728 5.728 15 C 0.145 3.855 16 C -0.063 4.063 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.002 4.002 20 C -0.509 4.509 21 H 0.078 0.922 22 C 0.066 3.934 23 N -0.904 5.904 24 Si 0.875 3.125 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.265 1.265 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.195 0.805 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.425 0.575 36 H 0.398 0.602 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.288 -33.561 0.202 33.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.395 3.605 4 O -0.412 6.412 5 C -0.325 4.325 6 C -0.010 4.010 7 N -0.129 5.129 8 C -0.043 4.043 9 N -0.105 5.105 10 C 0.121 3.879 11 N -0.302 5.302 12 C 0.393 3.607 13 O -0.422 6.422 14 N -0.384 5.384 15 C 0.021 3.979 16 C -0.063 4.063 17 C -0.187 4.187 18 C -0.186 4.186 19 C -0.040 4.040 20 C -0.547 4.547 21 H 0.096 0.904 22 C -0.135 4.135 23 N -0.544 5.544 24 Si 0.702 3.298 25 H -0.204 1.204 26 H -0.215 1.215 27 H -0.189 1.189 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.212 0.788 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.265 0.735 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.020 -32.779 0.199 32.842 hybrid contribution -0.948 0.051 -0.034 0.950 sum -2.968 -32.729 0.165 32.863 Atomic orbital electron populations 1.23263 0.75890 1.03598 1.02811 1.86515 1.23582 1.32608 1.84861 1.19858 0.87174 0.81413 0.72089 1.90789 1.66406 1.35922 1.48050 1.18905 0.90365 0.91930 1.31328 1.23167 0.83945 0.99725 0.94166 1.48378 1.06074 1.05173 1.53314 1.22061 0.83554 0.94474 1.04241 1.78195 1.14982 0.87366 1.29991 1.18725 0.89905 0.84291 0.94947 1.42258 1.11069 1.00735 1.76137 1.16031 0.85275 0.80715 0.78693 1.91020 1.12695 1.83623 1.54879 1.45300 1.10934 1.03690 1.78499 1.21579 0.91085 0.83316 1.01882 1.20706 0.96639 0.93128 0.95844 1.21782 0.98871 1.01211 0.96791 1.21778 0.98867 1.01208 0.96783 1.19594 0.94599 0.93199 0.96594 1.21078 0.95010 0.88361 1.50280 0.90365 1.25001 0.98013 0.95708 0.94778 1.69908 1.35578 0.97427 1.51439 0.86856 0.86754 0.77647 0.78508 1.20391 1.21548 1.18946 0.91764 0.88111 0.91756 0.78843 0.89868 0.88387 0.88784 0.73492 0.76652 0.91738 0.91750 0.94960 0.90853 0.93367 0.93360 0.90851 0.94960 0.96288 0.96745 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.36 -2.99 10.39 -40.71 -0.42 -3.41 16 3 C 0.55 5.96 7.95 34.31 0.27 6.24 16 4 O -0.52 -6.74 14.99 -19.31 -0.29 -7.03 16 5 C -0.31 -3.41 6.14 -104.94 -0.64 -4.06 16 6 C 0.15 1.10 11.32 -16.56 -0.19 0.91 16 7 N -0.35 -3.26 3.97 -67.58 -0.27 -3.53 16 8 C 0.10 0.42 11.43 59.85 0.68 1.11 16 9 N -0.28 -4.06 10.72 31.62 0.34 -3.72 16 10 C 0.38 5.42 7.79 -154.46 -1.20 4.22 16 11 N -0.65 -9.30 5.42 -15.30 -0.08 -9.39 16 12 C 0.69 11.66 8.53 -86.92 -0.74 10.92 16 13 O -0.55 -11.22 15.06 5.28 0.08 -11.14 16 14 N -0.73 -11.18 4.96 -65.22 -0.32 -11.50 16 15 C 0.14 2.54 4.56 -4.04 -0.02 2.52 16 16 C -0.06 -1.18 0.54 -154.51 -0.08 -1.26 16 17 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 18 C -0.13 -2.30 8.05 37.15 0.30 -2.00 16 19 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 20 C -0.51 -13.78 8.20 -34.44 -0.28 -14.06 16 21 H 0.08 2.24 5.92 -52.49 -0.31 1.92 16 22 C 0.07 1.88 5.47 -17.82 -0.10 1.79 16 23 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 24 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 28 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 35 H 0.43 5.39 6.97 -40.82 -0.28 5.10 16 36 H 0.40 5.25 6.18 -40.82 -0.25 5.00 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 40 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 44 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -37.17 387.97 -6.57 -43.74 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.83 Total: 4.28 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.72 Total: 5.46 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.44 Total: -54.86 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.63 Total: -21.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.17 -6.57 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413659170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.255 kcal (2) G-P(sol) polarization free energy of solvation -37.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds