Wall clock time and date at job start Tue Mar 31 2020 21:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34782 * 116.99826 * 2 1 4 4 O 1.21554 * 119.99849 * 359.97438 * 3 2 1 5 5 C 1.47071 * 120.00173 * 179.97438 * 3 2 1 6 6 C 1.38198 * 126.46092 * 0.02835 * 5 3 2 7 7 N 1.34130 * 107.53011 * 179.97438 * 6 5 3 8 8 C 1.46505 * 125.66682 * 179.97438 * 7 6 5 9 9 N 1.39910 * 108.66786 * 359.75763 * 7 6 5 10 10 C 1.30897 * 108.89131 * 0.41845 * 9 7 6 11 11 N 1.39779 * 126.08544 * 179.85192 * 10 9 7 12 12 C 1.34773 * 120.00002 * 359.69444 * 11 10 9 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00097 * 179.72685 * 12 11 10 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.46866 * 299.99525 * 16 15 14 18 18 C 1.52994 * 109.47172 * 59.99462 * 16 15 14 19 19 C 1.53000 * 109.46988 * 179.97438 * 16 15 14 20 20 C 1.50701 * 109.46983 * 179.97438 * 19 16 15 21 21 H 1.08000 * 119.99624 * 359.97438 * 20 19 16 22 22 C 1.37872 * 119.99634 * 179.97438 * 20 19 16 23 23 N 1.31520 * 119.99520 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00320 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46712 * 90.00023 * 24 22 20 26 26 H 1.48502 * 109.47295 * 209.99407 * 24 22 20 27 27 H 1.48499 * 109.47159 * 330.00030 * 24 22 20 28 28 H 1.09010 * 109.47075 * 60.00116 * 1 2 3 29 29 H 1.08998 * 109.46928 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47537 * 300.00442 * 1 2 3 31 31 H 1.08002 * 126.23810 * 359.95809 * 6 5 3 32 32 H 1.09005 * 109.46352 * 89.99922 * 8 7 6 33 33 H 1.08996 * 109.47501 * 210.00449 * 8 7 6 34 34 H 1.09002 * 109.47009 * 330.01017 * 8 7 6 35 35 H 0.97000 * 119.99886 * 179.68950 * 11 10 9 36 36 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 37 37 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 38 38 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 39 39 H 1.09007 * 109.47177 * 60.00009 * 17 16 15 40 40 H 1.08994 * 109.47297 * 180.02562 * 17 16 15 41 41 H 1.08997 * 109.47361 * 300.00353 * 17 16 15 42 42 H 1.09006 * 109.47135 * 60.00046 * 18 16 15 43 43 H 1.09001 * 109.47144 * 179.97438 * 18 16 15 44 44 H 1.08998 * 109.47717 * 300.00195 * 18 16 15 45 45 H 1.08998 * 109.46983 * 299.99930 * 19 16 15 46 46 H 1.08997 * 109.47123 * 59.99717 * 19 16 15 47 47 H 0.97003 * 119.99577 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5326 1.2780 0.0006 6 6 4.4109 0.2111 0.0006 7 7 5.6552 0.7121 0.0006 8 6 6.8922 -0.0729 0.0012 9 7 5.5754 2.1089 -0.0050 10 6 4.3149 2.4615 0.0007 11 7 3.8263 3.7711 0.0007 12 6 4.6843 4.8105 0.0007 13 8 5.8834 4.6089 0.0012 14 7 4.2132 6.0732 -0.0048 15 6 5.1459 7.2029 -0.0109 16 6 4.3582 8.5146 -0.0171 17 6 3.4768 8.5743 -1.2663 18 6 3.4778 8.5867 1.2321 19 6 5.3323 9.6945 -0.0228 20 6 4.5564 10.9864 -0.0295 21 1 3.4766 10.9677 -0.0301 22 6 5.2252 12.1920 -0.0348 23 7 4.5480 13.3195 -0.0412 24 14 7.0929 12.2242 -0.0345 25 1 7.5881 12.2263 -1.4346 26 1 7.5668 13.4483 0.6599 27 1 7.6085 11.0236 0.6712 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.1442 -0.8355 0.0008 32 1 7.1990 -0.2679 -1.0264 33 1 7.6757 0.4840 0.5150 34 1 6.7219 -1.0189 0.5152 35 1 2.8697 3.9319 0.0006 36 1 3.2566 6.2340 -0.0049 37 1 5.7742 7.1602 0.8788 38 1 5.7728 7.1518 -0.9011 39 1 2.7829 7.7336 -1.2618 40 1 2.9160 9.5088 -1.2710 41 1 4.1040 8.5229 -2.1563 42 1 4.1058 8.5441 2.1221 43 1 2.9170 9.5213 1.2280 44 1 2.7839 7.7461 1.2367 45 1 5.9599 9.6517 0.8674 46 1 5.9598 9.6433 -0.9125 47 1 5.0185 14.1678 -0.0446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413659170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:46 Heat of formation + Delta-G solvation = -60.630955 kcal Electronic energy + Delta-G solvation = -29226.934447 eV Core-core repulsion = 25025.114168 eV Total energy + Delta-G solvation = -4201.820279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.70647 -41.18563 -40.87205 -38.91757 -37.41223 -36.14308 -35.27933 -34.11768 -33.21704 -31.78528 -29.74754 -28.67437 -28.04600 -27.99620 -27.11154 -24.71634 -23.94828 -23.11844 -21.74471 -21.24859 -19.99823 -19.24174 -18.90726 -18.63840 -18.27708 -17.49022 -17.44618 -16.90668 -16.63304 -16.31048 -16.28288 -15.87341 -15.57347 -15.37779 -15.09469 -14.67100 -14.31880 -14.24224 -14.20570 -14.14232 -14.05798 -13.60313 -13.48249 -12.94570 -12.87292 -12.84568 -12.63329 -12.30563 -12.17069 -12.07860 -11.95061 -11.78138 -11.71411 -11.69625 -11.52284 -11.30413 -11.14399 -10.91884 -10.69985 -10.28812 -10.03723 -9.46867 -8.21894 -6.21884 0.32527 0.90094 1.01128 1.36285 1.38811 1.49300 1.57792 1.89906 1.99146 2.32601 2.39563 3.02469 3.13444 3.35477 3.84779 3.89374 4.04966 4.13554 4.14949 4.28162 4.41717 4.44071 4.45906 4.48608 4.54889 4.62774 4.70430 4.75047 4.78081 4.83417 4.94494 5.00061 5.09081 5.28627 5.31586 5.34756 5.40599 5.41712 5.47705 5.55063 5.68334 5.68693 5.77049 5.88526 6.38467 6.41851 6.79389 6.84700 6.93063 7.37667 7.40614 8.93682 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.002302 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.010395 B =12160.796248 C =13532.812274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.550 3.450 4 O -0.552 6.552 5 C -0.333 4.333 6 C 0.178 3.822 7 N -0.350 5.350 8 C 0.087 3.913 9 N -0.330 5.330 10 C 0.354 3.646 11 N -0.640 5.640 12 C 0.695 3.305 13 O -0.588 6.588 14 N -0.717 5.717 15 C 0.158 3.842 16 C -0.056 4.056 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.003 4.003 20 C -0.500 4.500 21 H 0.053 0.947 22 C 0.005 3.995 23 N -0.951 5.951 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.252 1.252 28 H 0.059 0.941 29 H 0.136 0.864 30 H 0.060 0.940 31 H 0.249 0.751 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.432 0.568 36 H 0.410 0.590 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.065 0.935 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 -37.707 0.214 37.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.267 6.267 3 C 0.398 3.602 4 O -0.444 6.444 5 C -0.348 4.348 6 C 0.022 3.978 7 N -0.126 5.126 8 C -0.052 4.052 9 N -0.160 5.160 10 C 0.095 3.905 11 N -0.295 5.295 12 C 0.394 3.606 13 O -0.464 6.464 14 N -0.374 5.374 15 C 0.034 3.966 16 C -0.057 4.057 17 C -0.182 4.182 18 C -0.182 4.182 19 C -0.041 4.041 20 C -0.539 4.539 21 H 0.071 0.929 22 C -0.191 4.191 23 N -0.593 5.593 24 Si 0.759 3.241 25 H -0.197 1.197 26 H -0.214 1.214 27 H -0.175 1.175 28 H 0.078 0.922 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.265 0.735 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.158 0.842 35 H 0.273 0.727 36 H 0.248 0.752 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.033 0.967 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.834 -36.981 0.210 37.027 hybrid contribution -1.079 1.158 -0.040 1.584 sum -2.914 -35.823 0.170 35.942 Atomic orbital electron populations 1.23553 0.74408 1.05785 1.02450 1.86499 1.24932 1.31006 1.84290 1.19900 0.87189 0.81711 0.71431 1.90765 1.67015 1.37007 1.49636 1.19055 0.90917 0.91766 1.33077 1.23922 0.82342 1.01101 0.90428 1.48713 1.08093 1.03588 1.52245 1.22506 0.81701 0.95290 1.05686 1.78028 1.15870 0.90988 1.31073 1.19051 0.90737 0.84608 0.96099 1.42065 1.10956 1.00812 1.75718 1.16102 0.84986 0.81212 0.78263 1.90987 1.14468 1.84285 1.56677 1.45031 1.11164 1.02912 1.78292 1.21236 0.90935 0.83163 1.01246 1.20557 0.96085 0.92180 0.96875 1.21713 0.99010 1.01306 0.96159 1.21710 0.99007 1.01311 0.96147 1.19565 0.95096 0.93137 0.96311 1.21351 0.94296 0.89991 1.48225 0.92932 1.25834 1.02691 0.95517 0.95102 1.70046 1.37443 0.98096 1.53695 0.85892 0.81305 0.78010 0.78850 1.19716 1.21444 1.17546 0.92183 0.84628 0.92161 0.73475 0.88502 0.89677 0.84247 0.72720 0.75243 0.92491 0.92441 0.91611 0.93365 0.93529 0.93556 0.93356 0.91605 0.96527 0.96688 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.48 16 2 O -0.35 -4.92 10.39 -56.93 -0.59 -5.51 16 3 C 0.55 11.12 7.95 70.14 0.56 11.68 16 4 O -0.55 -13.92 14.99 19.66 0.29 -13.62 16 5 C -0.33 -6.78 6.14 -20.07 -0.12 -6.91 16 6 C 0.18 2.07 11.32 84.33 0.95 3.03 16 7 N -0.35 -5.65 3.97 -367.73 -1.46 -7.11 16 8 C 0.09 0.50 11.43 127.77 1.46 1.96 16 9 N -0.33 -9.57 10.72 -53.89 -0.58 -10.14 16 10 C 0.35 9.92 7.79 133.92 1.04 10.96 16 11 N -0.64 -18.33 5.42 -320.58 -1.74 -20.06 16 12 C 0.70 23.25 8.53 179.06 1.53 24.78 16 13 O -0.59 -24.31 15.06 -4.01 -0.06 -24.37 16 14 N -0.72 -21.31 4.96 -478.52 -2.37 -23.69 16 15 C 0.16 5.44 4.56 86.38 0.39 5.84 16 16 C -0.06 -2.09 0.54 -52.18 -0.03 -2.12 16 17 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 18 C -0.12 -4.37 8.05 71.98 0.58 -3.79 16 19 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 20 C -0.50 -27.64 8.20 25.60 0.21 -27.43 16 21 H 0.05 3.12 5.92 -2.91 -0.02 3.10 16 22 C 0.00 0.27 5.47 84.65 0.46 0.74 16 23 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 24 Si 0.93 45.21 27.47 68.60 1.88 47.09 16 25 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.25 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.14 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.43 10.82 6.97 -92.71 -0.65 10.17 16 36 H 0.41 10.09 6.18 -92.71 -0.57 9.52 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 1.84 6.86 -2.38 -0.02 1.82 16 40 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 44 H 0.07 1.84 6.86 -2.39 -0.02 1.82 16 45 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 46 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 47 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -84.90 387.97 4.32 -80.57 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.26 Total: 19.58 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 8.91 Total: 16.38 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.85 Total: -120.13 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -0.36 Total: -43.50 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.09 kcal Total: -84.90 4.32 -80.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413659170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.942 kcal (2) G-P(sol) polarization free energy of solvation -84.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds