Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.47147 * 2 1 4 4 N 1.29946 * 126.28816 * 90.02332 * 3 2 1 5 5 O 1.21304 * 110.25166 * 179.97438 * 4 3 2 6 6 C 1.33641 * 109.81100 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.55164 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47187 * 270.02323 * 7 6 5 9 9 O 1.42906 * 109.49888 * 299.93762 * 8 7 6 10 10 C 1.53038 * 109.52686 * 179.85176 * 8 7 6 11 11 C 1.53037 * 109.53931 * 178.66699 * 10 8 7 12 12 C 1.53189 * 109.31344 * 61.36670 * 11 10 8 13 13 N 1.46954 * 108.88681 * 305.44281 * 12 11 10 14 14 C 1.34783 * 120.65545 * 233.53132 * 13 12 11 15 15 O 1.21579 * 120.00024 * 174.58635 * 14 13 12 16 16 N 1.34780 * 119.99689 * 354.59272 * 14 13 12 17 17 C 1.46496 * 119.99968 * 184.97889 * 16 14 13 18 18 C 1.50707 * 109.47260 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99806 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00006 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00309 * 359.97438 * 20 18 17 23 23 H 1.48509 * 109.47080 * 89.99994 * 22 20 18 24 24 H 1.48501 * 109.47365 * 209.99871 * 22 20 18 25 25 H 1.48502 * 109.47114 * 329.99887 * 22 20 18 26 26 C 1.46923 * 118.71996 * 53.35775 * 13 12 11 27 27 N 1.31132 * 106.89936 * 0.22113 * 6 5 4 28 28 H 1.08991 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46783 * 299.99963 * 1 2 3 30 30 H 1.09000 * 109.47256 * 59.99797 * 1 2 3 31 31 H 1.08997 * 109.46552 * 240.00208 * 2 1 3 32 32 H 1.08998 * 109.46900 * 119.99804 * 2 1 3 33 33 H 1.08999 * 109.47376 * 150.02117 * 7 6 5 34 34 H 1.08993 * 109.46928 * 30.02312 * 7 6 5 35 35 H 0.96696 * 113.99882 * 60.06339 * 9 8 7 36 36 H 1.08993 * 109.45987 * 298.68959 * 10 8 7 37 37 H 1.09001 * 109.45774 * 58.64769 * 10 8 7 38 38 H 1.09007 * 109.49656 * 181.32139 * 11 10 8 39 39 H 1.09003 * 109.50167 * 301.38013 * 11 10 8 40 40 H 1.09006 * 109.58594 * 65.15458 * 12 11 10 41 41 H 1.09001 * 109.58926 * 185.57656 * 12 11 10 42 42 H 0.97003 * 119.99848 * 4.97352 * 16 14 13 43 43 H 1.09002 * 109.47007 * 299.99501 * 17 16 14 44 44 H 1.08999 * 109.47801 * 59.99484 * 17 16 14 45 45 H 0.96993 * 120.00183 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.59158 * 186.78386 * 26 13 12 47 47 H 1.09007 * 109.58599 * 66.49388 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2892 2.1457 1.0474 5 8 2.6781 3.2448 0.7123 6 6 2.7068 3.3280 -0.6212 7 6 3.1288 4.5227 -1.4370 8 6 1.9117 5.4082 -1.7119 9 8 0.9319 4.6610 -2.4357 10 6 2.3396 6.6238 -2.5372 11 6 1.1167 7.4926 -2.8406 12 6 0.5102 7.9907 -1.5250 13 7 0.2301 6.8343 -0.6624 14 6 -0.9983 6.6482 -0.1400 15 8 -1.2442 5.6380 0.4902 16 7 -1.9541 7.5819 -0.3164 17 6 -3.2545 7.4325 0.3416 18 6 -4.1356 8.6019 -0.0155 19 1 -3.7639 9.3788 -0.6671 20 6 -5.4160 8.6797 0.4896 21 7 -6.1848 9.7004 0.1784 22 14 -6.0591 7.3354 1.6160 23 1 -5.7482 7.6807 3.0265 24 1 -7.5295 7.2112 1.4494 25 1 -5.4109 6.0455 1.2677 26 6 1.3141 5.8826 -0.3834 27 7 2.2924 2.1732 -1.0841 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5536 4.1854 -2.3825 34 1 3.8762 5.0933 -0.8859 35 1 0.6129 3.8760 -1.9700 36 1 3.0685 7.2067 -1.9742 37 1 2.7876 6.2882 -3.4725 38 1 1.4184 8.3458 -3.4482 39 1 0.3771 6.9033 -3.3826 40 1 1.2161 8.6542 -1.0253 41 1 -0.4164 8.5270 -1.7297 42 1 -1.7810 8.3529 -0.8791 43 1 -3.7256 6.5074 0.0093 44 1 -3.1136 7.4008 1.4219 45 1 -7.0855 9.7553 0.5341 46 1 0.9180 5.0280 0.1650 47 1 2.0862 6.3720 0.2104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001469995118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = -10.552463 kcal Electronic energy + Delta-G solvation = -30658.264311 eV Core-core repulsion = 26458.615599 eV Total energy + Delta-G solvation = -4199.648713 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.84540 -40.42726 -38.53413 -36.60437 -35.65066 -34.34677 -34.24640 -32.79565 -32.26919 -32.17505 -30.83137 -28.37172 -27.36745 -25.41930 -25.21898 -23.79517 -22.65208 -22.07903 -21.19440 -20.49666 -19.43067 -18.56594 -18.05097 -17.60964 -16.87191 -16.45626 -15.87302 -15.70461 -15.51151 -15.00671 -14.82977 -14.54947 -14.40033 -14.09491 -13.92051 -13.50594 -13.45252 -13.23856 -13.17371 -12.90514 -12.82316 -12.43142 -12.25897 -12.17670 -11.99457 -11.85026 -11.68855 -11.54242 -11.22217 -11.20291 -11.17377 -10.95065 -10.79486 -10.75143 -10.53657 -9.98190 -9.94767 -9.52542 -9.44200 -8.76222 -8.51084 -7.94502 -6.19432 -4.21104 0.87593 1.96023 2.49277 2.99787 3.28876 3.30255 3.35865 3.45219 3.70261 3.76668 3.97077 4.23386 4.29438 4.35829 4.47010 4.56182 4.71196 4.82635 4.87635 4.87743 4.93257 4.96425 5.10024 5.16305 5.25007 5.30368 5.41782 5.48609 5.51601 5.55536 5.59021 5.63383 5.65401 5.74962 5.76387 5.87220 5.93573 6.22803 6.59942 6.78789 7.13491 7.25199 7.39745 7.41637 7.50982 7.93262 8.26997 8.67176 8.80692 9.19127 9.42174 10.92564 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011544 B = 0.003368 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.018543 B = 8312.712949 C =10130.211633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C 0.170 3.830 4 N -0.377 5.377 5 O 0.083 5.917 6 C 0.173 3.827 7 C -0.055 4.055 8 C 0.122 3.878 9 O -0.538 6.538 10 C -0.099 4.099 11 C -0.131 4.131 12 C 0.110 3.890 13 N -0.627 5.627 14 C 0.702 3.298 15 O -0.603 6.603 16 N -0.721 5.721 17 C 0.238 3.762 18 C -0.541 4.541 19 H 0.079 0.921 20 C 0.078 3.922 21 N -0.893 5.893 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 C 0.104 3.896 27 N -0.473 5.473 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.376 0.624 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.392 0.608 43 H 0.023 0.977 44 H 0.017 0.983 45 H 0.267 0.733 46 H 0.089 0.911 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.389 -11.393 -5.551 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.102 4.102 4 N -0.083 5.083 5 O 0.023 5.977 6 C -0.047 4.047 7 C -0.095 4.095 8 C 0.079 3.921 9 O -0.343 6.343 10 C -0.137 4.137 11 C -0.170 4.170 12 C -0.013 4.013 13 N -0.366 5.366 14 C 0.403 3.597 15 O -0.483 6.483 16 N -0.375 5.375 17 C 0.115 3.885 18 C -0.579 4.579 19 H 0.097 0.903 20 C -0.126 4.126 21 N -0.531 5.531 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.185 1.185 26 C -0.021 4.021 27 N -0.207 5.207 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.224 0.776 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.228 0.772 43 H 0.041 0.959 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 22.826 -12.152 -4.938 26.326 hybrid contribution -0.371 -0.499 0.747 0.972 sum 22.455 -12.651 -4.191 26.112 Atomic orbital electron populations 1.21759 0.92929 1.02894 1.03237 1.19947 0.97101 0.85484 1.04501 1.25936 1.00349 1.00568 0.83382 1.74661 1.17207 0.92654 1.23823 1.85332 1.60486 1.27293 1.24572 1.28685 0.96714 0.96838 0.82469 1.21102 1.00109 0.89093 0.99154 1.21638 0.86452 0.91155 0.92899 1.86551 1.58679 1.42381 1.46718 1.21463 0.98318 0.93754 1.00126 1.21847 0.97902 0.99745 0.97478 1.21652 1.01333 0.87865 0.90489 1.47011 1.09386 1.26890 1.53286 1.15977 0.80023 0.83790 0.79919 1.90844 1.80605 1.28999 1.47811 1.45536 1.14744 1.24520 1.52677 1.19363 0.78929 0.97787 0.92410 1.21076 0.98037 1.06869 1.31913 0.90335 1.24767 0.96285 0.95665 0.95836 1.69878 1.08928 1.29767 1.44488 0.86824 0.78284 0.83191 0.81447 1.19862 1.20898 1.18480 1.22050 0.89931 0.94606 0.95505 1.71919 1.17631 1.01827 1.29362 0.91012 0.92036 0.91736 0.88637 0.89162 0.85934 0.86751 0.77592 0.90007 0.90458 0.90420 0.90148 0.91513 0.89731 0.77228 0.95902 0.96507 0.92284 0.89244 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.90 37.16 0.37 -1.01 16 2 C -0.03 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C 0.17 2.05 7.47 -156.37 -1.17 0.88 16 4 N -0.38 -5.06 12.16 30.90 0.38 -4.68 16 5 O 0.08 1.01 10.87 18.11 0.20 1.20 16 6 C 0.17 1.80 5.93 -13.06 -0.08 1.72 16 7 C -0.05 -0.38 5.13 -27.88 -0.14 -0.52 16 8 C 0.12 1.16 0.75 -90.50 -0.07 1.10 16 9 O -0.54 -6.85 12.15 -35.23 -0.43 -7.27 16 10 C -0.10 -0.73 4.92 -26.69 -0.13 -0.86 16 11 C -0.13 -1.22 5.94 -26.61 -0.16 -1.37 16 12 C 0.11 1.25 6.38 -3.70 -0.02 1.23 16 13 N -0.63 -9.44 2.92 -178.47 -0.52 -9.96 16 14 C 0.70 14.44 8.29 -86.91 -0.72 13.71 16 15 O -0.60 -14.71 15.77 5.30 0.08 -14.63 16 16 N -0.72 -15.42 5.46 -66.41 -0.36 -15.79 16 17 C 0.24 6.07 4.50 -5.19 -0.02 6.04 16 18 C -0.54 -15.08 9.83 -34.44 -0.34 -15.42 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 22 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 26 C 0.10 1.29 4.97 -3.71 -0.02 1.27 16 27 N -0.47 -5.55 11.05 -9.87 -0.11 -5.65 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.38 5.09 7.70 45.56 0.35 5.44 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.08 0.95 7.61 -51.93 -0.40 0.56 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.02 5.65 -51.93 -0.29 0.73 16 42 H 0.39 7.41 5.82 -40.82 -0.24 7.17 16 43 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 44 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.09 1.39 5.96 -51.93 -0.31 1.08 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -35.94 379.98 -8.02 -43.97 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.30 Total: 7.41 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -2.78 Total: 8.44 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.16 Total: -62.03 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.15 Total: -20.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.94 -8.02 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001469995118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.413 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds