Wall clock time and date at job start Tue Mar 31 2020 21:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46668 * 2 1 4 4 N 1.46504 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00388 * 275.30914 * 4 3 2 6 6 H 1.08001 * 119.99464 * 37.58055 * 5 4 3 7 7 C 1.38810 * 120.00112 * 217.57697 * 5 4 3 8 8 N 1.31618 * 119.99951 * 21.43354 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 201.43298 * 7 5 4 10 10 H 1.48506 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47316 * 119.99935 * 9 7 5 12 12 H 1.48501 * 109.47110 * 240.00186 * 9 7 5 13 13 C 1.46510 * 119.99679 * 95.31313 * 4 3 2 14 14 C 1.53002 * 109.46932 * 269.99872 * 13 4 3 15 15 N 1.46497 * 109.46942 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99675 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00680 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99895 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47466 * 179.97438 * 18 16 15 20 20 N 1.46500 * 109.47560 * 180.02562 * 19 18 16 21 21 C 1.37896 * 120.05834 * 90.00378 * 20 19 18 22 22 C 1.32993 * 121.65124 * 179.74450 * 21 20 19 23 23 N 1.37891 * 121.65424 * 0.23719 * 22 21 20 24 24 H 0.97005 * 120.06477 * 179.97438 * 23 22 21 25 25 C 1.35064 * 119.87428 * 0.02562 * 23 22 21 26 26 O 1.21584 * 120.76254 * 179.97438 * 25 23 22 27 27 C 1.35068 * 120.06613 * 270.27197 * 20 19 18 28 28 O 1.21582 * 120.76294 * 359.95888 * 27 20 19 29 29 H 1.09003 * 109.46637 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47147 * 299.99175 * 1 2 3 31 31 H 1.08992 * 109.47498 * 60.00020 * 1 2 3 32 32 H 1.09006 * 109.46933 * 240.00395 * 2 1 3 33 33 H 1.08992 * 109.47498 * 119.99979 * 2 1 3 34 34 H 1.08997 * 109.47369 * 60.00695 * 3 2 1 35 35 H 1.08994 * 109.47199 * 299.99656 * 3 2 1 36 36 H 0.96998 * 119.99987 * 179.97438 * 8 7 5 37 37 H 1.08990 * 109.46877 * 149.99872 * 13 4 3 38 38 H 1.09001 * 109.47136 * 29.99728 * 13 4 3 39 39 H 1.09001 * 109.47369 * 59.99852 * 14 13 4 40 40 H 1.09001 * 109.47093 * 299.99882 * 14 13 4 41 41 H 0.96999 * 120.00264 * 359.97438 * 15 14 13 42 42 H 1.09007 * 109.46565 * 60.00348 * 18 16 15 43 43 H 1.08991 * 109.47743 * 300.00450 * 18 16 15 44 44 H 1.09007 * 109.46618 * 60.00780 * 19 18 16 45 45 H 1.08991 * 109.47334 * 300.01100 * 19 18 16 46 46 H 1.07997 * 119.17389 * 0.02562 * 21 20 19 47 47 H 1.08000 * 119.17008 * 180.25443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3330 1.1817 6 1 3.8169 0.6876 1.9635 7 6 5.3612 2.0515 1.3740 8 7 5.6019 3.1241 0.6502 9 14 6.5969 1.4960 2.6600 10 1 6.0938 0.2719 3.3338 11 1 7.8961 1.2018 2.0037 12 1 6.7829 2.5729 3.6655 13 6 4.2379 1.5599 -1.2625 14 6 4.4932 0.1644 -1.8355 15 7 5.2267 0.2816 -3.0982 16 6 5.5644 -0.8266 -3.7867 17 8 5.2616 -1.9211 -3.3608 18 6 6.3184 -0.7060 -5.0859 19 6 6.5749 -2.1015 -5.6583 20 7 7.3085 -1.9844 -6.9210 21 6 8.6874 -1.9834 -6.9211 22 6 9.3851 -1.8837 -8.0490 23 7 8.7654 -1.7714 -9.2757 24 1 9.2970 -1.6998 -10.0840 25 6 7.4168 -1.7604 -9.3497 26 8 6.8537 -1.6617 -10.4227 27 6 6.6355 -1.8716 -8.0866 28 8 5.4198 -1.8665 -8.1048 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4207 3.6264 0.7849 37 1 5.1902 2.0595 -1.0848 38 1 3.6491 2.1417 -1.9716 39 1 3.5409 -0.3353 -2.0131 40 1 5.0820 -0.4174 -1.1264 41 1 5.4692 1.1569 -3.4387 42 1 7.2706 -0.2060 -4.9082 43 1 5.7296 -0.1247 -5.7952 44 1 5.6229 -2.6020 -5.8359 45 1 7.1640 -2.6826 -4.9488 46 1 9.2141 -2.0702 -5.9823 47 1 10.4641 -1.8912 -8.0030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481151136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:14 Heat of formation + Delta-G solvation = -67.964339 kcal Electronic energy + Delta-G solvation = -28865.051241 eV Core-core repulsion = 24662.912962 eV Total energy + Delta-G solvation = -4202.138278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.96034 -39.58765 -38.79448 -38.04849 -36.54474 -35.43573 -34.28378 -32.90789 -32.08200 -30.81657 -29.95673 -28.32097 -26.39774 -25.58857 -23.91082 -23.78786 -22.76948 -20.95559 -20.40127 -19.93489 -19.37119 -19.03951 -17.84930 -17.19121 -16.71236 -16.56558 -15.95276 -15.68633 -15.49730 -15.22183 -14.94945 -14.50082 -14.41517 -14.25895 -14.03581 -13.78208 -13.50795 -13.29415 -13.07887 -12.93377 -12.78677 -12.47874 -12.37827 -11.87196 -11.60176 -11.55172 -11.40222 -11.21014 -10.97733 -10.84492 -10.77947 -10.46118 -10.38838 -10.21793 -10.12036 -9.91141 -9.80802 -9.56095 -8.63249 -8.49951 -8.12580 -6.66252 -5.87984 -3.46636 0.86472 1.24530 1.93610 2.45283 2.83912 2.96322 3.29231 3.38807 3.42854 3.51219 3.66909 4.41134 4.42794 4.58134 4.64231 4.68772 4.96981 5.09857 5.22418 5.25123 5.39178 5.45920 5.58099 5.66214 5.71311 5.75475 6.00286 6.08823 6.11846 6.18603 6.19898 6.27002 6.40737 6.51873 6.60933 6.64496 6.74397 6.81135 6.95640 6.95822 6.97236 7.16460 7.48180 7.48912 7.76447 7.83304 8.42927 8.48074 9.10219 9.72099 10.30234 11.11993 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.002291 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.993832 B =12220.522852 C =13583.961799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.259 4.259 6 H 0.062 0.938 7 C 0.012 3.988 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.137 3.863 14 C 0.097 3.903 15 N -0.718 5.718 16 C 0.513 3.487 17 O -0.549 6.549 18 C -0.159 4.159 19 C 0.118 3.882 20 N -0.516 5.516 21 C 0.023 3.977 22 C 0.006 3.994 23 N -0.626 5.626 24 H 0.418 0.582 25 C 0.498 3.502 26 O -0.485 6.485 27 C 0.491 3.509 28 O -0.474 6.474 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.254 0.746 37 H 0.099 0.901 38 H 0.028 0.972 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.398 0.602 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.174 0.826 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.893 -7.297 -15.739 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.388 4.388 6 H 0.080 0.920 7 C -0.188 4.188 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.029 4.029 15 N -0.368 5.368 16 C 0.297 3.703 17 O -0.427 6.427 18 C -0.200 4.200 19 C -0.003 4.003 20 N -0.242 5.242 21 C -0.096 4.096 22 C -0.115 4.115 23 N -0.274 5.274 24 H 0.257 0.743 25 C 0.281 3.719 26 O -0.356 6.356 27 C 0.275 3.725 28 O -0.343 6.343 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.191 0.809 47 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.499 -7.883 -15.884 19.664 hybrid contribution 1.292 0.232 0.241 1.335 sum 9.792 -7.651 -15.642 19.977 Atomic orbital electron populations 1.21722 0.97318 1.00435 1.01008 1.22182 0.93841 1.00897 1.01567 1.20944 0.85022 0.92999 0.98936 1.43621 0.99461 1.84810 1.02084 1.19064 1.05565 1.20297 0.93912 0.92019 1.25187 1.00878 0.94573 0.98139 1.70008 1.25613 1.14827 1.42521 0.86334 0.81424 0.78475 0.81217 1.19972 1.21424 1.21593 1.21062 1.00327 0.91193 0.86463 1.22486 0.94899 1.02817 0.82650 1.46136 1.57560 1.08453 1.24637 1.20211 0.79869 0.84863 0.85333 1.90708 1.55405 1.26522 1.70102 1.21992 1.02452 0.99094 0.96454 1.21623 0.99342 0.97044 0.82296 1.45712 1.06023 1.64367 1.08117 1.21185 0.82154 1.06513 0.99795 1.21019 0.99033 1.08620 0.82817 1.43550 1.06789 1.66954 1.10103 0.74342 1.20381 0.82356 0.78885 0.90303 1.90931 1.69530 1.46581 1.28519 1.20327 0.88590 0.79695 0.83868 1.90923 1.11992 1.46158 1.85213 0.93787 0.93206 0.93450 0.92936 0.92354 0.93570 0.94743 0.93591 0.88389 0.95318 0.92917 0.91688 0.76848 0.88305 0.88460 0.87733 0.87820 0.80855 0.80799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.03 5.72 -4.04 -0.02 3.00 16 4 N -0.58 -13.73 2.43 -173.23 -0.42 -14.15 16 5 C -0.26 -6.77 9.45 -15.06 -0.14 -6.91 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 8 N -0.89 -24.10 11.47 55.49 0.64 -23.47 16 9 Si 0.90 20.79 29.60 -169.99 -5.03 15.76 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.14 2.95 5.45 -4.04 -0.02 2.93 16 14 C 0.10 1.88 6.00 -4.04 -0.02 1.85 16 15 N -0.72 -11.12 5.56 -60.29 -0.33 -11.46 16 16 C 0.51 7.62 7.83 -10.99 -0.09 7.54 16 17 O -0.55 -10.21 15.98 5.55 0.09 -10.12 16 18 C -0.16 -1.61 6.02 -27.88 -0.17 -1.78 16 19 C 0.12 1.16 4.69 -4.04 -0.02 1.14 16 20 N -0.52 -4.39 2.65 -116.82 -0.31 -4.70 16 21 C 0.02 0.11 10.25 -16.64 -0.17 -0.06 16 22 C 0.01 0.02 11.10 -16.64 -0.18 -0.17 16 23 N -0.63 -3.43 5.38 -12.60 -0.07 -3.49 16 24 H 0.42 1.27 8.93 -40.82 -0.36 0.91 16 25 C 0.50 5.28 8.03 -11.70 -0.09 5.19 16 26 O -0.49 -6.99 17.85 -10.30 -0.18 -7.18 16 27 C 0.49 5.81 7.73 -11.69 -0.09 5.72 16 28 O -0.47 -7.52 16.68 -10.30 -0.17 -7.69 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.98 6.64 -51.93 -0.34 0.64 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 36 H 0.25 6.64 8.31 -40.82 -0.34 6.31 16 37 H 0.10 2.36 5.52 -51.93 -0.29 2.07 16 38 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 39 H 0.05 1.07 6.64 -51.93 -0.34 0.72 16 40 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.40 5.17 8.47 -40.82 -0.35 4.82 16 42 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 1.28 7.43 -51.93 -0.39 0.90 16 45 H 0.10 0.87 8.00 -51.93 -0.42 0.45 16 46 H 0.17 0.28 8.06 -52.49 -0.42 -0.14 16 47 H 0.17 -0.15 8.06 -52.49 -0.42 -0.58 16 LS Contribution 397.04 15.07 5.98 5.98 Total: -1.00 -35.58 397.04 -7.80 -43.38 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.08 Total: 3.10 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: -0.91 Total: 14.05 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.50 Total: -57.27 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.27 Total: -24.99 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.58 -7.80 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481151136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.586 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds