Wall clock time and date at job start Tue Mar 31 2020 21:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46668 * 2 1 4 4 N 1.46504 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00388 * 275.30914 * 4 3 2 6 6 H 1.08001 * 119.99464 * 37.58055 * 5 4 3 7 7 C 1.38810 * 120.00112 * 217.57697 * 5 4 3 8 8 N 1.31618 * 119.99951 * 21.43354 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 201.43298 * 7 5 4 10 10 H 1.48506 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47316 * 119.99935 * 9 7 5 12 12 H 1.48501 * 109.47110 * 240.00186 * 9 7 5 13 13 C 1.46510 * 119.99679 * 95.31313 * 4 3 2 14 14 C 1.53002 * 109.46932 * 269.99872 * 13 4 3 15 15 N 1.46497 * 109.46942 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99675 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00680 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99895 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47466 * 179.97438 * 18 16 15 20 20 N 1.46500 * 109.47560 * 180.02562 * 19 18 16 21 21 C 1.37896 * 120.05834 * 90.00378 * 20 19 18 22 22 C 1.32993 * 121.65124 * 179.74450 * 21 20 19 23 23 N 1.37891 * 121.65424 * 0.23719 * 22 21 20 24 24 H 0.97005 * 120.06477 * 179.97438 * 23 22 21 25 25 C 1.35064 * 119.87428 * 0.02562 * 23 22 21 26 26 O 1.21584 * 120.76254 * 179.97438 * 25 23 22 27 27 C 1.35068 * 120.06613 * 270.27197 * 20 19 18 28 28 O 1.21582 * 120.76294 * 359.95888 * 27 20 19 29 29 H 1.09003 * 109.46637 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47147 * 299.99175 * 1 2 3 31 31 H 1.08992 * 109.47498 * 60.00020 * 1 2 3 32 32 H 1.09006 * 109.46933 * 240.00395 * 2 1 3 33 33 H 1.08992 * 109.47498 * 119.99979 * 2 1 3 34 34 H 1.08997 * 109.47369 * 60.00695 * 3 2 1 35 35 H 1.08994 * 109.47199 * 299.99656 * 3 2 1 36 36 H 0.96998 * 119.99987 * 179.97438 * 8 7 5 37 37 H 1.08990 * 109.46877 * 149.99872 * 13 4 3 38 38 H 1.09001 * 109.47136 * 29.99728 * 13 4 3 39 39 H 1.09001 * 109.47369 * 59.99852 * 14 13 4 40 40 H 1.09001 * 109.47093 * 299.99882 * 14 13 4 41 41 H 0.96999 * 120.00264 * 359.97438 * 15 14 13 42 42 H 1.09007 * 109.46565 * 60.00348 * 18 16 15 43 43 H 1.08991 * 109.47743 * 300.00450 * 18 16 15 44 44 H 1.09007 * 109.46618 * 60.00780 * 19 18 16 45 45 H 1.08991 * 109.47334 * 300.01100 * 19 18 16 46 46 H 1.07997 * 119.17389 * 0.02562 * 21 20 19 47 47 H 1.08000 * 119.17008 * 180.25443 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1892 1.3330 1.1817 6 1 3.8169 0.6876 1.9635 7 6 5.3612 2.0515 1.3740 8 7 5.6019 3.1241 0.6502 9 14 6.5969 1.4960 2.6600 10 1 6.0938 0.2719 3.3338 11 1 7.8961 1.2018 2.0037 12 1 6.7829 2.5729 3.6655 13 6 4.2379 1.5599 -1.2625 14 6 4.4932 0.1644 -1.8355 15 7 5.2267 0.2816 -3.0982 16 6 5.5644 -0.8266 -3.7867 17 8 5.2616 -1.9211 -3.3608 18 6 6.3184 -0.7060 -5.0859 19 6 6.5749 -2.1015 -5.6583 20 7 7.3085 -1.9844 -6.9210 21 6 8.6874 -1.9834 -6.9211 22 6 9.3851 -1.8837 -8.0490 23 7 8.7654 -1.7714 -9.2757 24 1 9.2970 -1.6998 -10.0840 25 6 7.4168 -1.7604 -9.3497 26 8 6.8537 -1.6617 -10.4227 27 6 6.6355 -1.8716 -8.0866 28 8 5.4198 -1.8665 -8.1048 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 6.4207 3.6264 0.7849 37 1 5.1902 2.0595 -1.0848 38 1 3.6491 2.1417 -1.9716 39 1 3.5409 -0.3353 -2.0131 40 1 5.0820 -0.4174 -1.1264 41 1 5.4692 1.1569 -3.4387 42 1 7.2706 -0.2060 -4.9082 43 1 5.7296 -0.1247 -5.7952 44 1 5.6229 -2.6020 -5.8359 45 1 7.1640 -2.6826 -4.9488 46 1 9.2141 -2.0702 -5.9823 47 1 10.4641 -1.8912 -8.0030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481151136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:13 Heat of formation + Delta-G solvation = -93.751056 kcal Electronic energy + Delta-G solvation = -28866.169436 eV Core-core repulsion = 24662.912962 eV Total energy + Delta-G solvation = -4203.256474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68843 -40.79218 -39.69415 -38.79218 -38.25183 -36.24359 -35.71511 -34.60542 -33.04560 -32.46890 -30.58883 -29.77986 -27.37364 -27.32872 -25.21934 -24.48654 -23.85107 -22.55028 -21.92580 -21.32344 -20.05467 -19.61774 -18.90294 -18.43470 -17.92963 -17.46094 -17.10594 -16.95470 -16.77931 -16.61529 -15.98528 -15.94518 -15.73591 -15.33120 -15.04118 -14.80478 -14.66089 -14.54622 -14.29589 -14.11210 -13.93554 -13.75307 -13.32974 -13.09813 -13.07250 -12.91700 -12.71839 -12.64355 -12.50080 -12.25594 -12.20947 -12.01257 -11.88419 -11.66771 -11.58955 -11.34500 -11.08387 -10.91273 -10.53038 -10.01735 -8.67093 -8.58518 -7.84951 -5.48142 0.03771 0.76293 1.18486 1.44377 1.48928 1.58723 1.62636 1.83161 2.21903 2.35671 2.52859 3.11106 3.22379 3.63667 3.74012 3.84012 3.92630 4.18595 4.21375 4.31174 4.33856 4.38796 4.42050 4.53956 4.58058 4.67688 4.74252 4.78726 4.85206 4.85726 4.98452 5.07814 5.15842 5.23007 5.25486 5.42514 5.42944 5.51277 5.61298 5.66899 5.70877 5.74939 6.14786 6.29505 6.45541 6.59289 6.80244 7.14932 7.25980 7.82462 8.35680 9.11195 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.002291 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.993832 B =12220.522852 C =13583.961799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.598 5.598 5 C -0.269 4.269 6 H 0.050 0.950 7 C -0.028 4.028 8 N -0.911 5.911 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.289 1.289 13 C 0.145 3.855 14 C 0.120 3.880 15 N -0.714 5.714 16 C 0.512 3.488 17 O -0.588 6.588 18 C -0.142 4.142 19 C 0.121 3.879 20 N -0.499 5.499 21 C 0.000 4.000 22 C 0.028 3.972 23 N -0.600 5.600 24 H 0.434 0.566 25 C 0.491 3.509 26 O -0.539 6.539 27 C 0.475 3.525 28 O -0.536 6.536 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.412 0.588 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.124 0.876 46 H 0.213 0.787 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.626 -7.472 -16.053 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.319 5.319 5 C -0.400 4.400 6 H 0.068 0.932 7 C -0.226 4.226 8 N -0.554 5.554 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.216 1.216 13 C 0.018 3.982 14 C -0.007 4.007 15 N -0.365 5.365 16 C 0.299 3.701 17 O -0.469 6.469 18 C -0.183 4.183 19 C -0.001 4.001 20 N -0.223 5.223 21 C -0.117 4.117 22 C -0.092 4.092 23 N -0.247 5.247 24 H 0.275 0.725 25 C 0.275 3.725 26 O -0.415 6.415 27 C 0.261 3.739 28 O -0.410 6.410 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.248 0.752 42 H 0.155 0.845 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.142 0.858 46 H 0.229 0.771 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.329 -8.049 -16.200 21.344 hybrid contribution 0.556 0.270 0.372 0.721 sum 11.885 -7.780 -15.828 21.267 Atomic orbital electron populations 1.21659 0.94361 1.01769 1.01959 1.22008 0.96346 0.98795 1.00250 1.21041 0.83558 0.94478 0.98944 1.43859 1.00765 1.85116 1.02115 1.19165 1.06232 1.19928 0.94641 0.93208 1.25769 1.02125 0.94682 1.00056 1.70095 1.25952 1.15531 1.43824 0.85461 0.79453 0.77839 0.79173 1.19980 1.21024 1.21574 1.20933 0.99206 0.92039 0.86068 1.21898 0.94319 1.00766 0.83708 1.45990 1.57347 1.09733 1.23445 1.20966 0.79136 0.83739 0.86255 1.90694 1.56848 1.27989 1.71354 1.21911 1.03385 0.99705 0.93283 1.21519 0.98746 0.96787 0.83063 1.45712 1.07680 1.62367 1.06585 1.21980 0.80005 1.07456 1.02278 1.21960 1.01148 1.05155 0.80896 1.43560 1.05116 1.63866 1.12138 0.72476 1.20269 0.83804 0.79331 0.89093 1.90898 1.70814 1.49914 1.29826 1.20671 0.88254 0.79911 0.85065 1.90880 1.14335 1.49803 1.86013 0.92285 0.92523 0.92237 0.93715 0.94176 0.94659 0.93487 0.93630 0.90544 0.94173 0.93848 0.94725 0.75152 0.84478 0.88391 0.90958 0.85795 0.77058 0.75340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.24 16 2 C -0.13 -4.89 6.23 30.60 0.19 -4.70 16 3 C 0.15 5.99 5.72 86.38 0.49 6.49 16 4 N -0.60 -28.72 2.43 -701.99 -1.71 -30.43 16 5 C -0.27 -14.34 9.45 84.03 0.79 -13.55 16 6 H 0.05 2.72 7.92 -2.91 -0.02 2.69 16 7 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 8 N -0.91 -49.70 11.47 21.65 0.25 -49.45 16 9 Si 0.95 42.89 29.60 68.60 2.03 44.92 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 13 C 0.14 6.28 5.45 86.38 0.47 6.75 16 14 C 0.12 4.72 6.00 86.38 0.52 5.24 16 15 N -0.71 -21.76 5.56 -463.06 -2.57 -24.33 16 16 C 0.51 14.89 7.83 87.66 0.69 15.58 16 17 O -0.59 -22.03 15.98 -3.04 -0.05 -22.08 16 18 C -0.14 -2.64 6.02 29.85 0.18 -2.46 16 19 C 0.12 2.22 4.69 86.38 0.41 2.63 16 20 N -0.50 -7.60 2.65 -641.60 -1.70 -9.30 16 21 C 0.00 0.00 10.25 82.57 0.85 0.85 16 22 C 0.03 0.03 11.10 82.57 0.92 0.94 16 23 N -0.60 -4.76 5.38 -311.87 -1.68 -6.44 16 24 H 0.43 1.21 8.93 -92.70 -0.83 0.38 16 25 C 0.49 10.28 8.03 87.07 0.70 10.98 16 26 O -0.54 -16.23 17.85 10.93 0.20 -16.04 16 27 C 0.48 11.39 7.73 87.07 0.67 12.06 16 28 O -0.54 -18.25 16.68 10.94 0.18 -18.06 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.68 6.64 -2.38 -0.02 1.67 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.51 8.08 -2.39 -0.02 1.49 16 35 H 0.05 1.80 7.83 -2.39 -0.02 1.78 16 36 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 37 H 0.08 3.72 5.52 -2.39 -0.01 3.70 16 38 H 0.04 1.62 7.86 -2.39 -0.02 1.60 16 39 H 0.04 1.79 6.64 -2.39 -0.02 1.77 16 40 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.41 10.22 8.47 -92.71 -0.79 9.44 16 42 H 0.14 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 1.85 7.43 -2.38 -0.02 1.83 16 45 H 0.12 1.79 8.00 -2.39 -0.02 1.77 16 46 H 0.21 -0.61 8.06 -2.91 -0.02 -0.63 16 47 H 0.23 -2.16 8.06 -2.91 -0.02 -2.18 16 Total: -1.00 -83.79 397.04 2.35 -81.45 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.61 Total: 13.29 kcal Atomic # 6 Polarization: 28.48 SS G_CDS: 8.01 Total: 36.49 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -7.41 Total: -119.96 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: 0.33 Total: -56.18 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -83.79 2.35 -81.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481151136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.305 kcal (2) G-P(sol) polarization free energy of solvation -83.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds