Wall clock time and date at job start Tue Mar 31 2020 20:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47332 * 2 1 4 4 N 1.29946 * 126.28698 * 269.69416 * 3 2 1 5 5 O 1.21297 * 110.24743 * 179.84159 * 4 3 2 6 6 C 1.33643 * 109.81380 * 0.41975 * 5 4 3 7 7 C 1.50700 * 126.54943 * 179.75686 * 6 5 4 8 8 O 1.42892 * 109.47646 * 269.97887 * 7 6 5 9 9 C 1.42895 * 114.00562 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47553 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99819 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00321 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00155 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.49545 * 34.94248 * 13 12 10 15 15 C 1.53041 * 109.49596 * 155.00351 * 13 12 10 16 16 C 1.53040 * 109.53799 * 181.32229 * 15 13 12 17 17 C 1.53189 * 109.31060 * 298.63372 * 16 15 13 18 18 N 1.46929 * 108.77526 * 54.63699 * 17 16 15 19 19 C 1.36939 * 120.62904 * 126.36882 * 18 17 16 20 20 H 1.07997 * 119.99688 * 207.68878 * 19 18 17 21 21 C 1.38813 * 120.00168 * 27.68711 * 19 18 17 22 22 N 1.31625 * 119.99847 * 17.36119 * 21 19 18 23 23 Si 1.86790 * 119.99978 * 197.35936 * 21 19 18 24 24 H 1.48500 * 109.47263 * 60.00392 * 23 21 19 25 25 H 1.48509 * 109.47147 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47451 * 300.00257 * 23 21 19 27 27 C 1.46922 * 118.73559 * 306.38927 * 18 17 16 28 28 N 1.31123 * 106.89802 * 359.74072 * 6 5 4 29 29 H 1.09002 * 109.46823 * 299.99438 * 1 2 3 30 30 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47398 * 59.99753 * 1 2 3 32 32 H 1.09006 * 109.47114 * 120.00294 * 2 1 3 33 33 H 1.09004 * 109.47033 * 239.99817 * 2 1 3 34 34 H 1.09002 * 109.47113 * 29.97955 * 7 6 5 35 35 H 1.09004 * 109.47072 * 149.97453 * 7 6 5 36 36 H 1.09000 * 109.47150 * 300.00158 * 9 8 7 37 37 H 1.09010 * 109.46739 * 60.00294 * 9 8 7 38 38 H 0.96999 * 120.00254 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46216 * 301.34151 * 15 13 12 40 40 H 1.09001 * 109.45916 * 61.31148 * 15 13 12 41 41 H 1.08998 * 109.49722 * 58.58801 * 16 15 13 42 42 H 1.09003 * 109.49469 * 178.64976 * 16 15 13 43 43 H 1.09007 * 109.58664 * 174.41999 * 17 16 15 44 44 H 1.09002 * 109.58808 * 294.84782 * 17 16 15 45 45 H 0.96994 * 119.99640 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58831 * 293.81928 * 27 18 17 47 47 H 1.09001 * 109.58387 * 173.39913 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2940 2.1440 -1.0474 5 8 2.6780 3.2447 -0.7123 6 6 2.7071 3.3278 0.6212 7 6 3.1293 4.5224 1.4370 8 8 4.5328 4.4508 1.6956 9 6 5.0382 5.5421 2.4673 10 6 6.5196 5.3643 2.6789 11 8 7.0869 4.3983 2.2142 12 7 7.2143 6.2793 3.3837 13 6 8.6544 6.1061 3.5899 14 1 9.0956 5.6454 2.7061 15 6 9.3033 7.4707 3.8325 16 6 10.8125 7.2945 4.0152 17 6 11.0748 6.4101 5.2383 18 7 10.3352 5.1506 5.0785 19 6 10.9786 3.9461 5.1794 20 1 10.5976 3.0845 4.6513 21 6 12.1206 3.8324 5.9603 22 7 12.3965 4.7522 6.8606 23 14 13.2657 2.3742 5.7337 24 1 13.7809 2.3611 4.3410 25 1 14.4034 2.4861 6.6817 26 1 12.5232 1.1158 5.9986 27 6 8.8922 5.2083 4.8081 28 7 2.2977 2.1713 1.0841 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.9077 5.4359 0.8851 35 1 2.5856 4.5278 2.3817 36 1 4.8562 6.4770 1.9372 37 1 4.5341 5.5681 3.4334 38 1 6.7607 7.0521 3.7551 39 1 9.1145 8.1198 2.9774 40 1 8.8790 7.9202 4.7302 41 1 11.2338 6.8223 3.1277 42 1 11.2772 8.2692 4.1641 43 1 12.1417 6.2000 5.3153 44 1 10.7351 6.9217 6.1388 45 1 13.1942 4.6725 7.4065 46 1 8.3745 5.6219 5.6735 47 1 8.5189 4.2053 4.6013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481539153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:47 Heat of formation + Delta-G solvation = 10.168613 kcal Electronic energy + Delta-G solvation = -28668.049166 eV Core-core repulsion = 24469.298986 eV Total energy + Delta-G solvation = -4198.750179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.92067 -39.86964 -38.31488 -37.14912 -36.68518 -34.33731 -34.19783 -32.47434 -32.04048 -30.47338 -29.82516 -28.38679 -26.65265 -25.46685 -25.27748 -23.53337 -22.26342 -22.01102 -21.52862 -20.31664 -19.39631 -18.56657 -17.95806 -17.23116 -17.05308 -16.67524 -16.60704 -15.73659 -15.39222 -15.12222 -14.71823 -14.66703 -14.45922 -13.98175 -13.69837 -13.52904 -13.39971 -13.15491 -12.96567 -12.53701 -12.43834 -12.38733 -12.30015 -12.17132 -11.83706 -11.74209 -11.67736 -11.31555 -11.08741 -10.89143 -10.76839 -10.34933 -10.29139 -10.26646 -10.24499 -9.93989 -9.90020 -9.64546 -9.49469 -8.85997 -8.39132 -6.66628 -5.77027 -3.18907 0.67857 1.79847 2.27828 2.72891 2.87680 3.23401 3.43193 3.47308 3.50917 3.64062 3.92490 4.38096 4.50654 4.53856 4.66859 4.71731 4.73801 4.78058 4.82499 4.92675 4.97766 5.27554 5.35219 5.38205 5.40439 5.49085 5.52866 5.61502 5.63054 5.69689 5.72764 6.06320 6.13375 6.21932 6.38409 6.51698 6.60642 6.63927 6.68870 6.83098 6.98073 7.35918 7.64855 7.66884 7.81847 7.85029 8.37703 8.48082 9.23752 9.85910 10.41152 11.31738 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002061 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.035111 B =13582.076355 C =15076.387551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.171 3.829 4 N -0.378 5.378 5 O 0.088 5.912 6 C 0.185 3.815 7 C 0.156 3.844 8 O -0.354 6.354 9 C 0.047 3.953 10 C 0.509 3.491 11 O -0.512 6.512 12 N -0.720 5.720 13 C 0.127 3.873 14 H 0.087 0.913 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.167 3.833 18 N -0.587 5.587 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.142 3.858 28 N -0.458 5.458 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.395 0.605 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.019 0.981 45 H 0.254 0.746 46 H 0.018 0.982 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.667 4.399 -10.755 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.102 4.102 4 N -0.084 5.084 5 O 0.028 5.972 6 C -0.036 4.036 7 C 0.078 3.922 8 O -0.271 6.271 9 C -0.033 4.033 10 C 0.292 3.708 11 O -0.386 6.386 12 N -0.373 5.373 13 C 0.022 3.978 14 H 0.105 0.895 15 C -0.152 4.152 16 C -0.180 4.180 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.014 3.986 28 N -0.194 5.194 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.228 0.772 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.157 2.914 -11.547 26.040 hybrid contribution 0.325 0.075 0.291 0.443 sum -22.832 2.989 -11.256 25.631 Atomic orbital electron populations 1.21734 0.93191 1.02938 1.02602 1.19976 0.96818 0.85478 1.05052 1.25939 1.00239 1.00702 0.83284 1.74646 1.17216 0.92660 1.23902 1.85302 1.60337 1.27005 1.24559 1.28145 0.96873 0.96427 0.82181 1.20578 0.84317 0.89968 0.97363 1.88088 1.19864 1.45623 1.73534 1.22331 0.93736 0.90309 0.96947 1.20011 0.88002 0.83531 0.79223 1.90796 1.70446 1.29204 1.48167 1.46008 1.10412 1.25780 1.55106 1.21782 0.77268 0.97340 1.01404 0.89525 1.21675 0.97675 0.95314 1.00536 1.22189 0.93548 1.00069 1.02198 1.20849 0.99197 0.84541 0.91283 1.43992 1.01336 1.02742 1.82947 1.19186 1.07708 0.88525 1.22596 0.91593 1.25018 1.00808 0.98055 0.95761 1.70030 1.27074 1.35952 1.21837 0.86344 0.80470 0.82381 0.77469 1.20962 1.21645 1.20844 1.21187 0.87105 0.97557 0.92758 1.71895 1.16710 1.01290 1.29458 0.91949 0.90917 0.92363 0.88303 0.88908 0.88884 0.87978 0.89627 0.89466 0.77155 0.93055 0.92185 0.92400 0.92674 0.89236 0.96286 0.93621 0.96440 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.17 1.96 7.47 -156.37 -1.17 0.79 16 4 N -0.38 -4.70 12.16 30.89 0.38 -4.33 16 5 O 0.09 1.03 11.31 18.10 0.20 1.24 16 6 C 0.19 1.99 8.14 -13.06 -0.11 1.88 16 7 C 0.16 1.14 6.56 36.01 0.24 1.37 16 8 O -0.35 -4.11 9.86 -55.14 -0.54 -4.66 16 9 C 0.05 0.41 6.42 36.00 0.23 0.64 16 10 C 0.51 7.31 7.87 -10.99 -0.09 7.22 16 11 O -0.51 -10.44 16.16 -14.35 -0.23 -10.67 16 12 N -0.72 -9.36 5.08 -53.69 -0.27 -9.63 16 13 C 0.13 2.21 2.61 -67.81 -0.18 2.03 16 14 H 0.09 1.77 7.58 -51.93 -0.39 1.37 16 15 C -0.11 -1.75 5.35 -26.69 -0.14 -1.89 16 16 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 17 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 18 N -0.59 -14.93 2.99 -172.32 -0.52 -15.45 16 19 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 20 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.33 11.19 55.49 0.62 -25.71 16 23 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.14 3.06 6.09 -3.72 -0.02 3.04 16 28 N -0.46 -5.59 11.55 -9.88 -0.11 -5.71 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.40 3.50 8.60 -40.82 -0.35 3.15 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 2.36 6.03 -51.92 -0.31 2.05 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 LS Contribution 392.54 15.07 5.92 5.92 Total: -1.00 -37.08 392.54 -8.41 -45.50 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.36 Total: -1.76 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.46 Total: 7.98 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.09 Total: -60.82 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.57 Total: -14.09 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.08 -8.41 -45.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481539153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.665 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds