Wall clock time and date at job start Tue Mar 31 2020 20:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47332 * 2 1 4 4 N 1.29946 * 126.28698 * 269.69416 * 3 2 1 5 5 O 1.21297 * 110.24743 * 179.84159 * 4 3 2 6 6 C 1.33643 * 109.81380 * 0.41975 * 5 4 3 7 7 C 1.50700 * 126.54943 * 179.75686 * 6 5 4 8 8 O 1.42892 * 109.47646 * 269.97887 * 7 6 5 9 9 C 1.42895 * 114.00562 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47553 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99819 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00321 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00155 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.49545 * 34.94248 * 13 12 10 15 15 C 1.53041 * 109.49596 * 155.00351 * 13 12 10 16 16 C 1.53040 * 109.53799 * 181.32229 * 15 13 12 17 17 C 1.53189 * 109.31060 * 298.63372 * 16 15 13 18 18 N 1.46929 * 108.77526 * 54.63699 * 17 16 15 19 19 C 1.36939 * 120.62904 * 126.36882 * 18 17 16 20 20 H 1.07997 * 119.99688 * 207.68878 * 19 18 17 21 21 C 1.38813 * 120.00168 * 27.68711 * 19 18 17 22 22 N 1.31625 * 119.99847 * 17.36119 * 21 19 18 23 23 Si 1.86790 * 119.99978 * 197.35936 * 21 19 18 24 24 H 1.48500 * 109.47263 * 60.00392 * 23 21 19 25 25 H 1.48509 * 109.47147 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47451 * 300.00257 * 23 21 19 27 27 C 1.46922 * 118.73559 * 306.38927 * 18 17 16 28 28 N 1.31123 * 106.89802 * 359.74072 * 6 5 4 29 29 H 1.09002 * 109.46823 * 299.99438 * 1 2 3 30 30 H 1.08999 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47398 * 59.99753 * 1 2 3 32 32 H 1.09006 * 109.47114 * 120.00294 * 2 1 3 33 33 H 1.09004 * 109.47033 * 239.99817 * 2 1 3 34 34 H 1.09002 * 109.47113 * 29.97955 * 7 6 5 35 35 H 1.09004 * 109.47072 * 149.97453 * 7 6 5 36 36 H 1.09000 * 109.47150 * 300.00158 * 9 8 7 37 37 H 1.09010 * 109.46739 * 60.00294 * 9 8 7 38 38 H 0.96999 * 120.00254 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.46216 * 301.34151 * 15 13 12 40 40 H 1.09001 * 109.45916 * 61.31148 * 15 13 12 41 41 H 1.08998 * 109.49722 * 58.58801 * 16 15 13 42 42 H 1.09003 * 109.49469 * 178.64976 * 16 15 13 43 43 H 1.09007 * 109.58664 * 174.41999 * 17 16 15 44 44 H 1.09002 * 109.58808 * 294.84782 * 17 16 15 45 45 H 0.96994 * 119.99640 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58831 * 293.81928 * 27 18 17 47 47 H 1.09001 * 109.58387 * 173.39913 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2940 2.1440 -1.0474 5 8 2.6780 3.2447 -0.7123 6 6 2.7071 3.3278 0.6212 7 6 3.1293 4.5224 1.4370 8 8 4.5328 4.4508 1.6956 9 6 5.0382 5.5421 2.4673 10 6 6.5196 5.3643 2.6789 11 8 7.0869 4.3983 2.2142 12 7 7.2143 6.2793 3.3837 13 6 8.6544 6.1061 3.5899 14 1 9.0956 5.6454 2.7061 15 6 9.3033 7.4707 3.8325 16 6 10.8125 7.2945 4.0152 17 6 11.0748 6.4101 5.2383 18 7 10.3352 5.1506 5.0785 19 6 10.9786 3.9461 5.1794 20 1 10.5976 3.0845 4.6513 21 6 12.1206 3.8324 5.9603 22 7 12.3965 4.7522 6.8606 23 14 13.2657 2.3742 5.7337 24 1 13.7809 2.3611 4.3410 25 1 14.4034 2.4861 6.6817 26 1 12.5232 1.1158 5.9986 27 6 8.8922 5.2083 4.8081 28 7 2.2977 2.1713 1.0841 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 2.9077 5.4359 0.8851 35 1 2.5856 4.5278 2.3817 36 1 4.8562 6.4770 1.9372 37 1 4.5341 5.5681 3.4334 38 1 6.7607 7.0521 3.7551 39 1 9.1145 8.1198 2.9774 40 1 8.8790 7.9202 4.7302 41 1 11.2338 6.8223 3.1277 42 1 11.2772 8.2692 4.1641 43 1 12.1417 6.2000 5.3153 44 1 10.7351 6.9217 6.1388 45 1 13.1942 4.6725 7.4065 46 1 8.3745 5.6219 5.6735 47 1 8.5189 4.2053 4.6013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481539153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:46 Heat of formation + Delta-G solvation = -18.592563 kcal Electronic energy + Delta-G solvation = -28669.296344 eV Core-core repulsion = 24469.298986 eV Total energy + Delta-G solvation = -4199.997358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.75332 -41.01725 -39.34774 -38.50538 -37.47276 -35.91791 -34.93760 -34.16101 -32.74093 -32.33794 -31.06050 -29.39732 -27.53707 -27.23951 -26.15705 -24.28016 -23.89489 -23.62918 -22.24172 -21.52729 -20.98576 -19.39884 -18.82393 -18.71801 -18.14861 -17.82372 -17.32520 -16.95034 -16.62111 -16.34997 -15.96592 -15.80687 -15.55586 -15.19651 -15.12239 -14.86008 -14.60085 -14.20076 -14.08569 -14.01168 -13.82243 -13.39874 -13.17683 -13.08449 -13.01913 -12.75205 -12.71781 -12.56270 -12.49573 -12.36633 -12.14661 -12.03499 -11.97706 -11.73904 -11.56246 -11.30486 -11.17844 -10.87099 -10.77951 -10.61808 -10.10083 -8.69999 -7.92239 -5.37065 -0.12136 0.98570 1.42421 1.44392 1.51969 1.56412 1.65676 1.97854 2.46941 2.51739 2.90135 3.16413 3.21567 3.64731 3.77004 3.84049 3.94757 4.09551 4.13029 4.14164 4.19346 4.26347 4.28421 4.30049 4.40723 4.42287 4.49910 4.59555 4.69458 4.83256 4.83919 4.89839 4.93460 4.98069 5.03858 5.14231 5.17871 5.20724 5.29723 5.47919 5.57076 5.62620 5.76990 5.84185 6.35589 6.66718 7.00151 7.11764 7.36689 7.82134 8.30762 9.12949 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002061 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.035111 B =13582.076355 C =15076.387551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.038 4.038 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.079 5.921 6 C 0.185 3.815 7 C 0.155 3.845 8 O -0.401 6.401 9 C 0.056 3.944 10 C 0.499 3.501 11 O -0.585 6.585 12 N -0.702 5.702 13 C 0.142 3.858 14 H 0.051 0.949 15 C -0.102 4.102 16 C -0.132 4.132 17 C 0.171 3.829 18 N -0.608 5.608 19 C -0.269 4.269 20 H 0.049 0.951 21 C -0.043 4.043 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.281 1.281 25 H -0.284 1.284 26 H -0.280 1.280 27 C 0.144 3.856 28 N -0.486 5.486 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.125 0.875 38 H 0.422 0.578 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.008 0.992 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.712 6.618 -11.014 28.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.109 4.109 4 N -0.111 5.111 5 O 0.021 5.979 6 C -0.036 4.036 7 C 0.077 3.923 8 O -0.319 6.319 9 C -0.023 4.023 10 C 0.286 3.714 11 O -0.464 6.464 12 N -0.356 5.356 13 C 0.035 3.965 14 H 0.069 0.931 15 C -0.140 4.140 16 C -0.171 4.171 17 C 0.046 3.954 18 N -0.332 5.332 19 C -0.399 4.399 20 H 0.067 0.933 21 C -0.240 4.240 22 N -0.572 5.572 23 Si 0.791 3.209 24 H -0.207 1.207 25 H -0.210 1.210 26 H -0.206 1.206 27 C 0.017 3.983 28 N -0.222 5.222 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.260 0.740 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.026 0.974 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -25.256 5.212 -11.795 28.358 hybrid contribution 0.923 -0.634 0.406 1.191 sum -24.333 4.579 -11.389 27.254 Atomic orbital electron populations 1.21695 0.91725 1.04197 1.02085 1.20188 0.98021 0.83816 1.05637 1.26571 0.99510 1.01805 0.82990 1.74622 1.18523 0.93235 1.24712 1.85259 1.60577 1.26853 1.25236 1.28996 0.95497 0.97078 0.82003 1.21070 0.82465 0.89967 0.98749 1.88004 1.22230 1.47343 1.74347 1.22455 0.88993 0.91383 0.99432 1.21202 0.90538 0.82073 0.77544 1.90774 1.72412 1.32152 1.51028 1.45707 1.08578 1.26607 1.54706 1.21215 0.80187 0.97590 0.97468 0.93073 1.21602 0.94947 0.94255 1.03179 1.22032 0.96339 1.00070 0.98690 1.20736 0.96779 0.84531 0.93394 1.44222 1.03017 1.02543 1.83437 1.19322 1.08629 0.89493 1.22473 0.93323 1.25693 1.01923 1.00717 0.95620 1.70150 1.27304 1.37369 1.22382 0.85409 0.78593 0.79481 0.77379 1.20698 1.20985 1.20607 1.21238 0.85124 0.97015 0.94954 1.71912 1.17980 1.02221 1.30089 0.92452 0.88750 0.92811 0.87861 0.88115 0.84506 0.85269 0.84575 0.85704 0.74022 0.89151 0.90072 0.93777 0.89570 0.92889 0.97398 0.93798 0.95571 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.90 71.98 0.71 -0.87 16 2 C -0.04 -0.59 6.56 29.85 0.20 -0.39 16 3 C 0.16 3.77 7.47 138.46 1.03 4.81 16 4 N -0.40 -10.11 12.16 -60.35 -0.73 -10.84 16 5 O 0.08 1.82 11.31 74.84 0.85 2.67 16 6 C 0.19 3.79 8.14 88.38 0.72 4.51 16 7 C 0.15 1.76 6.56 71.24 0.47 2.23 16 8 O -0.40 -8.40 9.86 -129.94 -1.28 -9.68 16 9 C 0.06 0.76 6.42 71.24 0.46 1.22 16 10 C 0.50 13.59 7.87 87.66 0.69 14.28 16 11 O -0.58 -24.53 16.16 16.00 0.26 -24.27 16 12 N -0.70 -16.45 5.08 -442.18 -2.25 -18.69 16 13 C 0.14 4.82 2.61 45.07 0.12 4.94 16 14 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 15 C -0.10 -2.80 5.35 30.62 0.16 -2.64 16 16 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 17 C 0.17 8.11 5.31 86.36 0.46 8.57 16 18 N -0.61 -31.94 2.99 -699.11 -2.09 -34.03 16 19 C -0.27 -15.91 9.59 84.03 0.81 -15.10 16 20 H 0.05 2.97 7.89 -2.91 -0.02 2.95 16 21 C -0.04 -2.53 4.91 84.86 0.42 -2.11 16 22 N -0.93 -55.34 11.19 21.65 0.24 -55.10 16 23 Si 0.96 47.06 29.59 68.60 2.03 49.09 16 24 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 27 C 0.14 6.34 6.09 86.36 0.53 6.86 16 28 N -0.49 -11.73 11.55 -303.24 -3.50 -15.23 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.13 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.42 5.50 8.60 -92.71 -0.80 4.70 16 39 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.05 2.88 6.03 -2.38 -0.01 2.87 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.09 16 47 H 0.02 1.21 7.93 -2.39 -0.02 1.19 16 Total: -1.00 -89.20 392.54 0.66 -88.54 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.19 Total: 5.71 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 6.95 Total: 21.85 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -8.33 Total: -133.90 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.18 Total: -31.29 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -89.20 0.66 -88.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481539153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.946 kcal (2) G-P(sol) polarization free energy of solvation -89.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds