Wall clock time and date at job start Tue Mar 31 2020 20:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47006 * 2 1 4 4 N 1.29938 * 125.38078 * 90.34566 * 3 2 1 5 5 C 1.36062 * 108.47841 * 180.16607 * 4 3 2 6 6 C 1.47421 * 126.44946 * 179.82590 * 5 4 3 7 7 O 1.21608 * 120.00383 * 179.68597 * 6 5 4 8 8 N 1.34781 * 119.99793 * 359.68819 * 6 5 4 9 9 C 1.46497 * 120.00055 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46680 * 60.00313 * 23 21 19 25 25 H 1.48496 * 109.46939 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47298 * 300.00205 * 23 21 19 27 27 C 1.36095 * 107.10212 * 359.56062 * 5 4 3 28 28 O 1.34055 * 125.37677 * 270.02470 * 3 2 1 29 29 H 1.09007 * 109.47111 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47439 * 300.00386 * 1 2 3 32 32 H 1.09000 * 109.47506 * 240.00106 * 2 1 3 33 33 H 1.08998 * 109.47412 * 119.99797 * 2 1 3 34 34 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 35 35 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 36 36 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 37 37 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 38 38 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 40 40 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 41 41 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 42 42 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 43 43 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 44 44 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 45 45 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 47 47 H 1.07997 * 126.52158 * 180.28021 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1281 1.0594 5 6 2.7172 3.3575 0.6638 6 6 3.1118 4.4725 1.5438 7 8 3.4838 5.5252 1.0619 8 7 3.0604 4.3251 2.8826 9 6 3.4519 5.4333 3.7571 10 6 3.3026 5.0068 5.2187 11 1 2.2858 4.6545 5.3924 12 6 4.2919 3.8804 5.5250 13 6 3.5913 6.2010 6.1306 14 7 3.3321 5.8250 7.5268 15 6 3.5986 6.9500 8.4331 16 6 3.3216 6.5277 9.8530 17 8 2.9402 5.4003 10.0868 18 7 3.4977 7.4028 10.8628 19 6 3.2462 7.0184 12.1545 20 1 2.9067 6.0146 12.3629 21 6 3.4283 7.9203 13.1957 22 7 3.8420 9.1416 12.9423 23 14 3.0850 7.3968 14.9557 24 1 3.9641 6.2545 15.3127 25 1 3.3550 8.5338 15.8719 26 1 1.6636 6.9857 15.0816 27 6 2.7183 3.3622 -0.6971 28 8 2.2906 2.1527 -1.0930 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7640 3.4853 3.2670 35 1 2.8118 6.2937 3.5620 36 1 4.4903 5.7011 3.5614 37 1 5.3086 4.2328 5.3514 38 1 4.1858 3.5769 6.5665 39 1 4.0862 3.0297 4.8754 40 1 2.9460 7.0344 5.8529 41 1 4.6345 6.4974 6.0218 42 1 3.8714 5.0135 7.7888 43 1 4.6418 7.2520 8.3404 44 1 2.9530 7.7883 8.1713 45 1 3.8031 8.3042 10.6757 46 1 3.9687 9.7714 13.6691 47 1 3.0084 4.1826 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482093824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:47 Heat of formation + Delta-G solvation = -65.362291 kcal Electronic energy + Delta-G solvation = -27583.781109 eV Core-core repulsion = 23381.755664 eV Total energy + Delta-G solvation = -4202.025445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.90405 -39.88382 -38.37821 -37.25281 -35.52837 -34.88893 -34.44624 -33.84298 -32.24005 -31.17454 -30.01271 -27.40322 -27.19521 -25.22194 -24.88681 -24.04407 -22.88738 -21.62345 -20.88586 -20.30071 -19.24327 -18.47912 -17.86104 -17.32107 -16.89421 -16.62931 -15.93956 -15.75980 -15.44874 -15.33726 -15.08061 -14.66202 -14.48276 -14.29196 -14.11747 -13.85847 -13.69305 -13.40081 -13.26966 -12.96468 -12.80451 -12.61344 -12.37028 -12.05468 -11.81437 -11.69241 -11.56697 -11.52887 -11.30777 -11.19125 -11.04478 -10.94661 -10.87441 -10.51355 -10.43172 -10.19959 -9.55719 -9.48722 -9.27654 -8.44684 -8.04511 -7.94399 -6.40227 -3.81144 0.66639 1.54443 2.08113 2.76055 2.95711 3.21250 3.26807 3.31243 3.36125 3.92604 4.10417 4.25941 4.29540 4.33603 4.52599 4.53982 4.73200 4.73745 4.80235 4.90316 5.09699 5.11186 5.15011 5.20569 5.26964 5.34547 5.38125 5.43703 5.48112 5.55912 5.61622 5.66351 5.76067 5.81341 5.87658 6.00449 6.04766 6.14795 6.22407 6.29250 6.93273 7.22498 7.25512 7.56309 7.68012 7.83741 8.07598 8.62860 9.19143 9.55860 10.07408 10.77412 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.001476 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.702725 B =18963.591969 C =19834.644437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.028 4.028 3 C 0.201 3.799 4 N -0.460 5.460 5 C -0.072 4.072 6 C 0.601 3.399 7 O -0.538 6.538 8 N -0.707 5.707 9 C 0.124 3.876 10 C -0.102 4.102 11 H 0.090 0.910 12 C -0.153 4.153 13 C 0.067 3.933 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.012 3.988 28 O -0.196 6.196 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.410 0.590 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.349 0.651 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.766 -13.774 -29.498 32.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.066 4.066 3 C -0.009 4.009 4 N -0.190 5.190 5 C -0.192 4.192 6 C 0.386 3.614 7 O -0.416 6.416 8 N -0.358 5.358 9 C 0.000 4.000 10 C -0.121 4.121 11 H 0.108 0.892 12 C -0.210 4.210 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.062 4.062 28 O -0.082 6.082 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.449 -13.694 -28.929 32.100 hybrid contribution 1.016 0.465 0.291 1.155 sum -1.433 -13.230 -28.637 31.578 Atomic orbital electron populations 1.21803 0.92751 1.03315 1.03146 1.20157 0.97113 0.83755 1.05581 1.26408 0.99238 0.96993 0.78223 1.70765 1.15729 1.02523 1.29966 1.21799 1.09969 0.94312 0.93088 1.16718 0.77652 0.85075 0.81948 1.90838 1.48020 1.27232 1.75465 1.45802 1.66698 1.18083 1.05229 1.21467 1.01035 0.88945 0.88514 1.21366 1.01770 0.96644 0.92311 0.89165 1.21907 0.98745 0.97863 1.02532 1.21874 0.99084 0.96676 0.88720 1.60082 1.62822 1.07092 1.00195 1.21673 0.99505 0.94385 0.92681 1.19814 0.84895 0.86724 0.85958 1.90516 1.51285 1.20620 1.84397 1.41855 1.58866 1.13374 1.05916 1.19661 1.42204 0.99542 0.81610 0.87972 1.25262 0.97187 0.95060 1.00404 1.69608 1.46401 1.04610 1.33697 0.85910 0.79094 0.77852 0.81309 1.19942 1.20986 1.19891 1.25308 0.98591 0.86577 0.95702 1.84403 1.63273 1.22543 1.37957 0.92099 0.90609 0.91518 0.88613 0.87232 0.75333 0.90861 0.91055 0.92657 0.91345 0.92621 0.90727 0.95139 0.83034 0.93853 0.89552 0.77441 0.91832 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.89 37.16 0.37 -0.15 16 2 C -0.03 -0.10 6.56 -27.88 -0.18 -0.29 16 3 C 0.20 1.49 7.56 -13.08 -0.10 1.39 16 4 N -0.46 -4.38 11.06 -7.65 -0.08 -4.46 16 5 C -0.07 -0.72 6.99 -83.02 -0.58 -1.30 16 6 C 0.60 6.93 7.81 -12.52 -0.10 6.83 16 7 O -0.54 -7.54 16.89 5.27 0.09 -7.45 16 8 N -0.71 -7.13 5.28 -61.39 -0.32 -7.45 16 9 C 0.12 1.24 5.06 -4.05 -0.02 1.22 16 10 C -0.10 -1.04 2.63 -90.62 -0.24 -1.28 16 11 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 12 C -0.15 -1.51 8.84 37.16 0.33 -1.18 16 13 C 0.07 0.80 5.14 -3.82 -0.02 0.78 16 14 N -0.67 -10.71 6.12 -115.05 -0.70 -11.41 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.50 7.82 -10.99 -0.09 10.42 16 17 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 18 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 C 0.01 0.10 11.95 29.96 0.36 0.45 16 28 O -0.20 -1.49 10.73 6.50 0.07 -1.42 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.41 3.77 7.38 -40.82 -0.30 3.47 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 39 H 0.05 0.49 7.18 -51.93 -0.37 0.12 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 5.74 6.68 -39.29 -0.26 5.48 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.23 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 401.87 15.07 6.06 6.06 Total: -1.00 -34.50 401.87 -6.75 -41.25 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -7.04 Total: 13.36 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -0.54 Total: 9.67 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.45 Total: -61.73 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.25 Total: -24.74 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.50 -6.75 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482093824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.113 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds