Wall clock time and date at job start Tue Mar 31 2020 20:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47006 * 2 1 4 4 N 1.29938 * 125.38078 * 90.34566 * 3 2 1 5 5 C 1.36062 * 108.47841 * 180.16607 * 4 3 2 6 6 C 1.47421 * 126.44946 * 179.82590 * 5 4 3 7 7 O 1.21608 * 120.00383 * 179.68597 * 6 5 4 8 8 N 1.34781 * 119.99793 * 359.68819 * 6 5 4 9 9 C 1.46497 * 120.00055 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47162 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47076 * 304.99867 * 10 9 8 12 12 C 1.53004 * 109.47412 * 64.99947 * 10 9 8 13 13 C 1.53006 * 109.47268 * 185.00067 * 10 9 8 14 14 N 1.46898 * 109.47138 * 174.99901 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46680 * 60.00313 * 23 21 19 25 25 H 1.48496 * 109.46939 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47298 * 300.00205 * 23 21 19 27 27 C 1.36095 * 107.10212 * 359.56062 * 5 4 3 28 28 O 1.34055 * 125.37677 * 270.02470 * 3 2 1 29 29 H 1.09007 * 109.47111 * 60.00140 * 1 2 3 30 30 H 1.09000 * 109.46903 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47439 * 300.00386 * 1 2 3 32 32 H 1.09000 * 109.47506 * 240.00106 * 2 1 3 33 33 H 1.08998 * 109.47412 * 119.99797 * 2 1 3 34 34 H 0.96998 * 120.00074 * 0.02562 * 8 6 5 35 35 H 1.09005 * 109.46785 * 59.99797 * 9 8 6 36 36 H 1.09001 * 109.46833 * 299.99849 * 9 8 6 37 37 H 1.08997 * 109.46495 * 60.00353 * 12 10 9 38 38 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.46646 * 300.00184 * 12 10 9 40 40 H 1.08997 * 109.46770 * 54.99847 * 13 10 9 41 41 H 1.08995 * 109.47019 * 295.00060 * 13 10 9 42 42 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 43 43 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 44 44 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 45 45 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 47 47 H 1.07997 * 126.52158 * 180.28021 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2891 2.1281 1.0594 5 6 2.7172 3.3575 0.6638 6 6 3.1118 4.4725 1.5438 7 8 3.4838 5.5252 1.0619 8 7 3.0604 4.3251 2.8826 9 6 3.4519 5.4333 3.7571 10 6 3.3026 5.0068 5.2187 11 1 2.2858 4.6545 5.3924 12 6 4.2919 3.8804 5.5250 13 6 3.5913 6.2010 6.1306 14 7 3.3321 5.8250 7.5268 15 6 3.5986 6.9500 8.4331 16 6 3.3216 6.5277 9.8530 17 8 2.9402 5.4003 10.0868 18 7 3.4977 7.4028 10.8628 19 6 3.2462 7.0184 12.1545 20 1 2.9067 6.0146 12.3629 21 6 3.4283 7.9203 13.1957 22 7 3.8420 9.1416 12.9423 23 14 3.0850 7.3968 14.9557 24 1 3.9641 6.2545 15.3127 25 1 3.3550 8.5338 15.8719 26 1 1.6636 6.9857 15.0816 27 6 2.7183 3.3622 -0.6971 28 8 2.2906 2.1527 -1.0930 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.7640 3.4853 3.2670 35 1 2.8118 6.2937 3.5620 36 1 4.4903 5.7011 3.5614 37 1 5.3086 4.2328 5.3514 38 1 4.1858 3.5769 6.5665 39 1 4.0862 3.0297 4.8754 40 1 2.9460 7.0344 5.8529 41 1 4.6345 6.4974 6.0218 42 1 3.8714 5.0135 7.7888 43 1 4.6418 7.2520 8.3404 44 1 2.9530 7.7883 8.1713 45 1 3.8031 8.3042 10.6757 46 1 3.9687 9.7714 13.6691 47 1 3.0084 4.1826 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482093824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:46 Heat of formation + Delta-G solvation = -94.193271 kcal Electronic energy + Delta-G solvation = -27585.031314 eV Core-core repulsion = 23381.755664 eV Total energy + Delta-G solvation = -4203.275650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.50756 -40.76443 -40.16307 -38.36683 -36.24810 -36.08258 -35.65188 -34.86653 -33.42127 -33.09750 -30.58712 -28.83224 -28.01237 -26.69663 -25.45824 -25.11948 -23.93134 -22.20595 -21.69528 -21.27501 -20.91853 -19.91431 -19.20192 -17.95475 -17.92801 -17.51222 -17.24660 -16.95359 -16.57299 -16.37747 -16.06468 -15.79557 -15.53890 -15.48695 -15.24638 -15.04111 -14.63107 -14.44283 -14.32423 -13.95898 -13.61370 -13.58674 -13.46101 -13.36269 -13.08102 -12.79331 -12.64232 -12.43149 -12.38152 -12.15034 -12.10660 -12.04386 -11.95436 -11.87573 -11.78067 -11.49860 -11.41282 -10.34828 -10.31196 -10.01543 -9.99846 -9.32115 -8.46207 -5.95258 0.01960 0.89441 1.40368 1.42183 1.53206 1.53850 1.98681 2.05476 2.15731 2.29894 2.78879 2.95945 3.20990 3.52828 3.63587 3.73810 3.87945 3.91745 3.97065 4.20581 4.25181 4.33349 4.35756 4.46850 4.50831 4.55738 4.56060 4.58039 4.62694 4.71549 4.77909 4.92289 4.98162 4.98953 5.03873 5.04512 5.18776 5.30241 5.34507 5.38090 5.40962 5.88793 6.10316 6.22882 6.41808 6.52854 6.60336 6.99893 7.12560 7.56333 8.11550 8.70863 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.001476 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.702725 B =18963.591969 C =19834.644437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C 0.203 3.797 4 N -0.484 5.484 5 C -0.102 4.102 6 C 0.599 3.401 7 O -0.569 6.569 8 N -0.701 5.701 9 C 0.131 3.869 10 C -0.089 4.089 11 H 0.082 0.918 12 C -0.150 4.150 13 C 0.068 3.932 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.026 3.974 28 O -0.195 6.195 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.415 0.585 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.345 0.655 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -14.282 -30.590 33.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.065 4.065 3 C -0.006 4.006 4 N -0.213 5.213 5 C -0.221 4.221 6 C 0.386 3.614 7 O -0.449 6.449 8 N -0.352 5.352 9 C 0.007 3.993 10 C -0.109 4.109 11 H 0.101 0.899 12 C -0.207 4.207 13 C -0.062 4.062 14 N -0.316 5.316 15 C -0.069 4.069 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.049 4.049 28 O -0.081 6.081 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.252 0.748 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.165 0.835 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.341 -14.194 -30.027 33.296 hybrid contribution 0.962 0.566 0.551 1.244 sum -1.380 -13.628 -29.477 32.504 Atomic orbital electron populations 1.21789 0.92434 1.04299 1.02192 1.20412 0.97211 0.81779 1.07137 1.27187 0.97906 0.97870 0.77686 1.70734 1.16898 1.02670 1.31043 1.21732 1.12076 0.94487 0.93793 1.16930 0.77099 0.85100 0.82292 1.90809 1.49669 1.28465 1.75983 1.45771 1.66179 1.18225 1.05011 1.21374 1.01012 0.88828 0.88096 1.21209 1.01433 0.96117 0.92100 0.89916 1.21871 0.98908 0.98063 1.01867 1.21948 1.00113 0.97531 0.86566 1.60078 1.63306 1.06474 1.01739 1.21541 1.01235 0.95243 0.88838 1.20888 0.82908 0.85798 0.87972 1.90484 1.52631 1.22330 1.85556 1.41927 1.59450 1.13861 1.05752 1.19652 1.44328 0.99201 0.83451 0.90276 1.26048 0.96325 0.94927 1.03917 1.69670 1.46191 1.05159 1.35040 0.84976 0.78806 0.77885 0.76589 1.19661 1.19468 1.19761 1.25782 0.96787 0.86960 0.95330 1.84439 1.63170 1.22471 1.38025 0.92329 0.88657 0.93164 0.86247 0.86435 0.74832 0.91098 0.90963 0.92120 0.92646 0.91681 0.90002 0.93745 0.83508 0.91512 0.87771 0.76956 0.91289 0.72913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.89 71.98 0.71 -0.07 16 2 C -0.03 -0.16 6.56 29.85 0.20 0.04 16 3 C 0.20 2.78 7.56 88.39 0.67 3.45 16 4 N -0.48 -8.95 11.06 -293.02 -3.24 -12.19 16 5 C -0.10 -2.01 6.99 40.41 0.28 -1.72 16 6 C 0.60 13.72 7.81 86.66 0.68 14.40 16 7 O -0.57 -15.88 16.89 -4.06 -0.07 -15.94 16 8 N -0.70 -13.85 5.28 -466.38 -2.46 -16.31 16 9 C 0.13 2.49 5.06 86.38 0.44 2.92 16 10 C -0.09 -1.74 2.63 -10.79 -0.03 -1.77 16 11 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 12 C -0.15 -2.81 8.84 71.98 0.64 -2.18 16 13 C 0.07 1.52 5.14 86.31 0.44 1.96 16 14 N -0.68 -21.23 6.12 -517.92 -3.17 -24.40 16 15 C 0.06 2.19 6.17 85.56 0.53 2.72 16 16 C 0.44 20.97 7.82 87.66 0.69 21.65 16 17 O -0.62 -34.81 15.78 -3.06 -0.05 -34.86 16 18 N -0.57 -29.66 5.29 -306.99 -1.62 -31.28 16 19 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 23 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 27 C 0.03 0.38 11.95 67.32 0.80 1.18 16 28 O -0.20 -2.69 10.73 0.34 0.00 -2.69 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.41 7.47 7.38 -92.71 -0.68 6.79 16 35 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.05 1.20 6.68 -2.39 -0.02 1.19 16 39 H 0.06 1.09 7.18 -2.39 -0.02 1.07 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.35 11.23 6.68 -89.69 -0.60 10.63 16 43 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.40 19.47 7.90 -92.71 -0.73 18.73 16 46 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 47 H 0.26 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -74.95 401.87 -1.97 -76.92 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -1.00 Total: 41.30 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 7.32 Total: 23.90 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -10.21 Total: -133.76 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.11 Total: -53.49 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.95 -1.97 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482093824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.276 kcal (2) G-P(sol) polarization free energy of solvation -74.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds