Wall clock time and date at job start Tue Mar 31 2020 21:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47650 * 2 1 4 4 C 1.53005 * 109.47241 * 120.00131 * 2 1 3 5 5 H 1.09002 * 109.46750 * 299.99906 * 4 2 1 6 6 C 1.53002 * 109.47124 * 59.99392 * 4 2 1 7 7 C 1.52995 * 109.47181 * 185.00080 * 6 4 2 8 8 N 1.46498 * 109.47014 * 180.02562 * 7 6 4 9 9 C 1.34777 * 119.99850 * 179.97438 * 8 7 6 10 10 O 1.21622 * 120.00494 * 354.90343 * 9 8 7 11 11 C 1.47307 * 119.99799 * 174.89768 * 9 8 7 12 12 C 1.38323 * 120.74026 * 5.30383 * 11 9 8 13 13 N 1.34949 * 119.02526 * 179.97438 * 12 11 9 14 14 C 1.46500 * 119.70565 * 180.02562 * 13 12 11 15 15 C 1.34453 * 120.58374 * 359.97438 * 13 12 11 16 16 O 1.21913 * 119.19799 * 180.02562 * 15 13 12 17 17 N 1.33316 * 121.60615 * 0.02562 * 15 13 12 18 18 C 1.32222 * 120.93111 * 359.72365 * 17 15 13 19 19 O 1.35003 * 120.34061 * 180.28376 * 18 17 15 20 20 N 1.46500 * 109.47480 * 179.97438 * 4 2 1 21 21 C 1.36938 * 119.99854 * 84.99701 * 20 4 2 22 22 H 1.07998 * 119.99934 * 0.02562 * 21 20 4 23 23 C 1.38809 * 119.99510 * 180.02562 * 21 20 4 24 24 N 1.31622 * 119.99411 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00353 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47116 * 90.00137 * 25 23 21 27 27 H 1.48507 * 109.46798 * 210.00006 * 25 23 21 28 28 H 1.48494 * 109.47034 * 329.99953 * 25 23 21 29 29 H 1.09002 * 109.47172 * 300.00221 * 1 2 3 30 30 H 1.08998 * 109.47048 * 59.99617 * 1 2 3 31 31 H 1.08996 * 109.47455 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47172 * 239.99779 * 2 1 3 33 33 H 1.08996 * 109.47826 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47208 * 300.00285 * 3 2 1 35 35 H 1.09003 * 109.47267 * 60.00168 * 3 2 1 36 36 H 1.09008 * 109.46831 * 65.00509 * 6 4 2 37 37 H 1.08996 * 109.47515 * 305.00576 * 6 4 2 38 38 H 1.08998 * 109.46896 * 60.00459 * 7 6 4 39 39 H 1.08999 * 109.47059 * 300.00172 * 7 6 4 40 40 H 0.97003 * 120.00177 * 0.02562 * 8 7 6 41 41 H 1.08002 * 120.48724 * 359.95207 * 12 11 9 42 42 H 1.08992 * 109.47114 * 90.00258 * 14 13 12 43 43 H 1.09005 * 109.46549 * 210.00025 * 14 13 12 44 44 H 1.08997 * 109.46961 * 329.99469 * 14 13 12 45 45 H 0.96700 * 113.99617 * 0.22900 * 19 18 17 46 46 H 0.96996 * 119.99868 * 265.00146 * 20 4 2 47 47 H 0.97007 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5299 -2.1638 1.2493 7 6 1.9346 -2.8478 2.5566 8 7 1.4467 -4.2292 2.5564 9 6 1.6877 -5.0291 3.6139 10 8 2.3881 -4.6357 4.5271 11 6 1.1026 -6.3801 3.6640 12 6 0.3947 -6.8843 2.5879 13 7 -0.1261 -8.1264 2.6708 14 6 -0.8781 -8.6754 1.5397 15 6 0.0399 -8.8650 3.7820 16 8 -0.4411 -9.9843 3.8295 17 7 0.7176 -8.4033 4.8331 18 6 1.2580 -7.1967 4.8166 19 8 1.9467 -6.7432 5.8855 20 7 3.5050 -0.7219 1.2490 21 6 4.1901 0.3528 1.7499 22 1 3.6505 1.2005 2.1455 23 6 5.5782 0.3524 1.7491 24 7 6.2368 1.3851 2.2310 25 14 6.5115 -1.1136 1.0642 26 1 6.7584 -0.9098 -0.3859 27 1 7.8095 -1.2491 1.7731 28 1 5.7088 -2.3473 1.2611 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.9645 -2.7029 0.4074 37 1 0.4436 -2.1651 1.1597 38 1 1.5000 -2.3088 3.3984 39 1 3.0209 -2.8466 2.6461 40 1 0.9508 -4.5683 1.7947 41 1 0.2604 -6.2924 1.6945 42 1 -0.1965 -9.2014 0.8714 43 1 -1.6335 -9.3695 1.9083 44 1 -1.3639 -7.8637 0.9982 45 1 1.9957 -7.3729 6.6177 46 1 3.9896 -1.4834 0.8940 47 1 7.2069 1.3851 2.2302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485793174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:24 Heat of formation + Delta-G solvation = -53.576803 kcal Electronic energy + Delta-G solvation = -29504.589063 eV Core-core repulsion = 25303.074675 eV Total energy + Delta-G solvation = -4201.514388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.35405 -39.82693 -38.85712 -37.64932 -37.21890 -35.09454 -34.89088 -33.11457 -32.35467 -31.11629 -29.84090 -28.18066 -26.48418 -25.74203 -25.45871 -23.94112 -22.62505 -21.28473 -21.16747 -20.20354 -19.49776 -18.69531 -18.37529 -17.44647 -17.16432 -16.62243 -16.03746 -15.64264 -15.51104 -15.11628 -15.03701 -14.77035 -14.17737 -14.07214 -13.96270 -13.94961 -13.72848 -13.53489 -13.29867 -13.22940 -12.62007 -12.35539 -12.12559 -11.90088 -11.70111 -11.46165 -11.36884 -11.07560 -10.88945 -10.81481 -10.53626 -10.52855 -10.47860 -10.28968 -10.15857 -10.04324 -9.85101 -9.45028 -9.22000 -8.98461 -8.87716 -7.27310 -5.76756 -3.11905 0.00611 0.83263 1.77705 2.72567 2.81622 2.93967 3.37127 3.37480 3.39024 3.46539 3.54622 3.77730 4.21170 4.44087 4.59055 4.60785 4.63469 4.78428 4.97615 5.02706 5.07526 5.31747 5.35953 5.42527 5.54634 5.57147 5.68978 5.73006 5.82444 5.95180 6.05463 6.17294 6.21273 6.31950 6.36716 6.45362 6.55571 6.59864 6.72540 6.76383 6.99917 7.23368 7.33155 7.36410 7.64692 7.99346 8.11952 8.41797 9.19973 9.92435 10.11073 11.41322 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002739 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.888905 B =10219.309490 C =11421.301037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.190 3.810 5 H 0.059 0.941 6 C -0.140 4.140 7 C 0.122 3.878 8 N -0.730 5.730 9 C 0.571 3.429 10 O -0.505 6.505 11 C -0.290 4.290 12 C 0.239 3.761 13 N -0.519 5.519 14 C 0.057 3.943 15 C 0.654 3.346 16 O -0.527 6.527 17 N -0.615 5.615 18 C 0.495 3.505 19 O -0.409 6.409 20 N -0.746 5.746 21 C -0.237 4.237 22 H 0.094 0.906 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.881 3.119 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.389 0.611 41 H 0.188 0.812 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.414 0.586 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.157 -16.350 -4.463 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.080 3.920 5 H 0.077 0.923 6 C -0.179 4.179 7 C 0.000 4.000 8 N -0.382 5.382 9 C 0.356 3.644 10 O -0.379 6.379 11 C -0.303 4.303 12 C 0.098 3.902 13 N -0.233 5.233 14 C -0.085 4.085 15 C 0.356 3.644 16 O -0.401 6.401 17 N -0.374 5.374 18 C 0.293 3.707 19 O -0.200 6.200 20 N -0.389 5.389 21 C -0.367 4.367 22 H 0.111 0.889 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.712 3.288 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.223 0.777 41 H 0.204 0.796 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.270 0.730 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.805 -16.713 -3.277 23.927 hybrid contribution 0.520 -1.044 -1.201 1.674 sum -16.285 -17.758 -4.478 24.507 Atomic orbital electron populations 1.21932 0.96931 1.00537 1.01052 1.21742 0.93485 0.98032 0.99896 1.21838 1.04516 0.94428 0.99073 1.20163 0.84744 0.91077 0.95997 0.92345 1.22194 1.00983 0.98295 0.96398 1.21500 1.01234 0.78717 0.98532 1.45972 1.58581 1.14147 1.19535 1.17244 0.80977 0.83093 0.83105 1.90921 1.36247 1.74025 1.36698 1.19856 1.15233 0.99871 0.95382 1.22844 0.84966 0.84663 0.97688 1.46278 1.44706 1.13823 1.18464 1.22353 0.97736 1.01556 0.86894 1.17466 0.81650 0.86190 0.79092 1.91003 1.50902 1.17561 1.80608 1.69751 1.24449 1.15199 1.28015 1.20229 0.79526 0.85621 0.85316 1.85305 1.65506 1.44392 1.24783 1.42817 1.00488 1.20485 1.75070 1.19035 0.89260 0.95947 1.32452 0.88866 1.24654 0.96243 0.97055 1.01087 1.69692 1.06995 1.29874 1.51482 0.86614 0.80002 0.83530 0.78703 1.21339 1.21899 1.20382 0.93066 0.93682 0.93312 0.92346 0.89252 0.95202 0.93811 0.91747 0.91011 0.91121 0.89908 0.77706 0.79553 0.89664 0.87928 0.88855 0.72968 0.80730 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.85 37.15 0.33 -1.37 16 2 C -0.11 -1.65 2.69 -90.62 -0.24 -1.89 16 3 C -0.14 -2.46 8.26 37.15 0.31 -2.15 16 4 C 0.19 3.09 2.02 -67.93 -0.14 2.95 16 5 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 6 C -0.14 -1.66 4.65 -26.73 -0.12 -1.78 16 7 C 0.12 1.65 5.57 -4.04 -0.02 1.62 16 8 N -0.73 -7.23 5.51 -61.42 -0.34 -7.57 16 9 C 0.57 7.08 7.75 -12.57 -0.10 6.98 16 10 O -0.50 -8.80 15.32 -15.92 -0.24 -9.05 16 11 C -0.29 -2.77 5.90 -104.70 -0.62 -3.39 16 12 C 0.24 1.31 9.90 -16.15 -0.16 1.15 16 13 N -0.52 -3.70 2.96 -128.87 -0.38 -4.08 16 14 C 0.06 0.19 10.35 59.85 0.62 0.81 16 15 C 0.65 7.87 8.32 -88.50 -0.74 7.13 16 16 O -0.53 -7.96 16.67 5.00 0.08 -7.88 16 17 N -0.62 -7.57 10.38 -16.47 -0.17 -7.74 16 18 C 0.50 5.49 7.93 -15.90 -0.13 5.36 16 19 O -0.41 -4.40 11.78 -37.90 -0.45 -4.84 16 20 N -0.75 -15.62 4.26 -53.42 -0.23 -15.85 16 21 C -0.24 -6.13 8.05 -15.06 -0.12 -6.25 16 22 H 0.09 2.61 7.63 -52.49 -0.40 2.21 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 24 N -0.93 -28.46 13.97 55.49 0.78 -27.69 16 25 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.46 6.32 -51.93 -0.33 0.14 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.90 6.01 -51.93 -0.31 1.59 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.44 7.75 -51.93 -0.40 1.03 16 40 H 0.39 2.11 6.58 -40.82 -0.27 1.84 16 41 H 0.19 0.09 6.48 -52.49 -0.34 -0.25 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.10 0.48 7.36 -51.93 -0.38 0.10 16 44 H 0.09 -0.02 8.02 -51.93 -0.42 -0.44 16 45 H 0.41 2.49 8.98 45.56 0.41 2.90 16 46 H 0.36 7.55 5.66 -40.82 -0.23 7.32 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -38.98 383.52 -7.07 -46.05 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.96 Total: 6.86 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -1.23 Total: 9.22 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.34 Total: -62.93 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.61 Total: -21.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.98 -7.07 -46.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485793174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.524 kcal (2) G-P(sol) polarization free energy of solvation -38.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds