Wall clock time and date at job start Tue Mar 31 2020 21:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47650 * 2 1 4 4 C 1.53005 * 109.47241 * 120.00131 * 2 1 3 5 5 H 1.09002 * 109.46750 * 299.99906 * 4 2 1 6 6 C 1.53002 * 109.47124 * 59.99392 * 4 2 1 7 7 C 1.52995 * 109.47181 * 185.00080 * 6 4 2 8 8 N 1.46498 * 109.47014 * 180.02562 * 7 6 4 9 9 C 1.34777 * 119.99850 * 179.97438 * 8 7 6 10 10 O 1.21622 * 120.00494 * 354.90343 * 9 8 7 11 11 C 1.47307 * 119.99799 * 174.89768 * 9 8 7 12 12 C 1.38323 * 120.74026 * 5.30383 * 11 9 8 13 13 N 1.34949 * 119.02526 * 179.97438 * 12 11 9 14 14 C 1.46500 * 119.70565 * 180.02562 * 13 12 11 15 15 C 1.34453 * 120.58374 * 359.97438 * 13 12 11 16 16 O 1.21913 * 119.19799 * 180.02562 * 15 13 12 17 17 N 1.33316 * 121.60615 * 0.02562 * 15 13 12 18 18 C 1.32222 * 120.93111 * 359.72365 * 17 15 13 19 19 O 1.35003 * 120.34061 * 180.28376 * 18 17 15 20 20 N 1.46500 * 109.47480 * 179.97438 * 4 2 1 21 21 C 1.36938 * 119.99854 * 84.99701 * 20 4 2 22 22 H 1.07998 * 119.99934 * 0.02562 * 21 20 4 23 23 C 1.38809 * 119.99510 * 180.02562 * 21 20 4 24 24 N 1.31622 * 119.99411 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00353 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47116 * 90.00137 * 25 23 21 27 27 H 1.48507 * 109.46798 * 210.00006 * 25 23 21 28 28 H 1.48494 * 109.47034 * 329.99953 * 25 23 21 29 29 H 1.09002 * 109.47172 * 300.00221 * 1 2 3 30 30 H 1.08998 * 109.47048 * 59.99617 * 1 2 3 31 31 H 1.08996 * 109.47455 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47172 * 239.99779 * 2 1 3 33 33 H 1.08996 * 109.47826 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47208 * 300.00285 * 3 2 1 35 35 H 1.09003 * 109.47267 * 60.00168 * 3 2 1 36 36 H 1.09008 * 109.46831 * 65.00509 * 6 4 2 37 37 H 1.08996 * 109.47515 * 305.00576 * 6 4 2 38 38 H 1.08998 * 109.46896 * 60.00459 * 7 6 4 39 39 H 1.08999 * 109.47059 * 300.00172 * 7 6 4 40 40 H 0.97003 * 120.00177 * 0.02562 * 8 7 6 41 41 H 1.08002 * 120.48724 * 359.95207 * 12 11 9 42 42 H 1.08992 * 109.47114 * 90.00258 * 14 13 12 43 43 H 1.09005 * 109.46549 * 210.00025 * 14 13 12 44 44 H 1.08997 * 109.46961 * 329.99469 * 14 13 12 45 45 H 0.96700 * 113.99617 * 0.22900 * 19 18 17 46 46 H 0.96996 * 119.99868 * 265.00146 * 20 4 2 47 47 H 0.97007 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 1.5299 -2.1638 1.2493 7 6 1.9346 -2.8478 2.5566 8 7 1.4467 -4.2292 2.5564 9 6 1.6877 -5.0291 3.6139 10 8 2.3881 -4.6357 4.5271 11 6 1.1026 -6.3801 3.6640 12 6 0.3947 -6.8843 2.5879 13 7 -0.1261 -8.1264 2.6708 14 6 -0.8781 -8.6754 1.5397 15 6 0.0399 -8.8650 3.7820 16 8 -0.4411 -9.9843 3.8295 17 7 0.7176 -8.4033 4.8331 18 6 1.2580 -7.1967 4.8166 19 8 1.9467 -6.7432 5.8855 20 7 3.5050 -0.7219 1.2490 21 6 4.1901 0.3528 1.7499 22 1 3.6505 1.2005 2.1455 23 6 5.5782 0.3524 1.7491 24 7 6.2368 1.3851 2.2310 25 14 6.5115 -1.1136 1.0642 26 1 6.7584 -0.9098 -0.3859 27 1 7.8095 -1.2491 1.7731 28 1 5.7088 -2.3473 1.2611 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 1.9645 -2.7029 0.4074 37 1 0.4436 -2.1651 1.1597 38 1 1.5000 -2.3088 3.3984 39 1 3.0209 -2.8466 2.6461 40 1 0.9508 -4.5683 1.7947 41 1 0.2604 -6.2924 1.6945 42 1 -0.1965 -9.2014 0.8714 43 1 -1.6335 -9.3695 1.9083 44 1 -1.3639 -7.8637 0.9982 45 1 1.9957 -7.3729 6.6177 46 1 3.9896 -1.4834 0.8940 47 1 7.2069 1.3851 2.2302 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485793174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:23 Heat of formation + Delta-G solvation = -88.569582 kcal Electronic energy + Delta-G solvation = -29506.106464 eV Core-core repulsion = 25303.074675 eV Total energy + Delta-G solvation = -4203.031789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.08037 -40.75437 -39.70203 -38.94296 -38.07007 -35.98468 -35.81299 -34.87628 -33.31350 -32.62758 -31.14161 -28.62384 -27.67003 -27.02453 -26.16692 -24.96191 -24.12803 -22.48287 -22.08964 -20.97884 -20.87068 -19.49553 -19.36949 -18.98141 -17.87169 -17.39070 -16.99086 -16.94272 -16.32388 -16.30322 -15.86707 -15.77141 -15.56851 -15.19111 -14.94218 -14.88966 -14.84116 -14.53415 -14.38484 -14.31991 -13.73281 -13.48663 -13.32092 -12.91375 -12.86374 -12.62950 -12.59525 -12.42281 -12.28455 -12.14358 -11.95451 -11.78007 -11.67307 -11.41145 -11.33364 -11.31230 -11.18043 -10.93410 -10.74984 -10.15983 -9.79183 -9.15944 -7.92045 -5.21579 -0.56029 0.00714 1.20750 1.39364 1.43878 1.50142 1.89751 2.01241 2.14277 2.55601 2.57332 2.96748 3.30474 3.40134 3.55307 3.72000 3.97105 4.02239 4.09001 4.15152 4.25119 4.34762 4.44147 4.45675 4.54160 4.74788 4.80373 4.86935 4.87607 4.90182 5.02016 5.05912 5.09599 5.21503 5.30967 5.33380 5.41325 5.49326 5.51657 5.75395 5.82955 5.93312 6.11554 6.32315 6.45805 6.59747 6.86935 7.20641 7.29126 7.98051 8.14409 9.30119 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002739 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.888905 B =10219.309490 C =11421.301037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.140 4.140 4 C 0.180 3.820 5 H 0.038 0.962 6 C -0.124 4.124 7 C 0.130 3.870 8 N -0.706 5.706 9 C 0.575 3.425 10 O -0.567 6.567 11 C -0.319 4.319 12 C 0.286 3.714 13 N -0.509 5.509 14 C 0.047 3.953 15 C 0.646 3.354 16 O -0.571 6.571 17 N -0.648 5.648 18 C 0.489 3.511 19 O -0.426 6.426 20 N -0.748 5.748 21 C -0.197 4.197 22 H 0.060 0.940 23 C -0.072 4.072 24 N -0.991 5.991 25 Si 0.945 3.055 26 H -0.280 1.280 27 H -0.310 1.310 28 H -0.251 1.251 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.030 0.970 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.417 0.583 41 H 0.252 0.748 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.145 0.855 45 H 0.426 0.574 46 H 0.364 0.636 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.436 -18.373 -8.276 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.197 4.197 4 C 0.071 3.929 5 H 0.056 0.944 6 C -0.162 4.162 7 C 0.006 3.994 8 N -0.360 5.360 9 C 0.361 3.639 10 O -0.446 6.446 11 C -0.331 4.331 12 C 0.143 3.857 13 N -0.219 5.219 14 C -0.093 4.093 15 C 0.348 3.652 16 O -0.449 6.449 17 N -0.408 5.408 18 C 0.289 3.711 19 O -0.219 6.219 20 N -0.391 5.391 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.263 4.263 24 N -0.643 5.643 25 Si 0.774 3.226 26 H -0.206 1.206 27 H -0.238 1.238 28 H -0.176 1.176 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.256 0.744 41 H 0.268 0.732 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.163 0.837 45 H 0.285 0.715 46 H 0.197 0.803 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.189 -18.782 -7.170 28.491 hybrid contribution 1.381 -0.356 -0.029 1.426 sum -18.808 -19.137 -7.199 27.781 Atomic orbital electron populations 1.21864 0.93421 1.02952 1.01459 1.21623 0.96301 0.95511 0.99000 1.21777 1.01411 0.97113 0.99440 1.20466 0.81815 0.94589 0.95994 0.94411 1.22077 1.03595 0.94554 0.95935 1.21177 0.98624 0.80573 0.99063 1.45573 1.58013 1.12461 1.19937 1.17548 0.79938 0.83845 0.82525 1.90899 1.39149 1.75445 1.39098 1.19594 1.18073 0.98808 0.96640 1.23619 0.80801 0.83514 0.97719 1.46284 1.43762 1.13849 1.18035 1.22780 0.97497 1.03419 0.85564 1.17551 0.81374 0.86094 0.80193 1.90968 1.52721 1.19474 1.81690 1.69608 1.25698 1.16105 1.29391 1.20452 0.79224 0.85563 0.85842 1.85295 1.65649 1.45388 1.25618 1.42853 1.02735 1.18921 1.74579 1.18960 0.89074 0.95785 1.29037 0.92185 1.25390 0.97559 1.00003 1.03321 1.69881 1.06685 1.32657 1.55075 0.85543 0.77951 0.81233 0.77843 1.20604 1.23823 1.17590 0.93495 0.92598 0.89848 0.91425 0.93887 0.93215 0.95110 0.89395 0.86558 0.92978 0.94220 0.74418 0.73172 0.88245 0.89709 0.83669 0.71459 0.80324 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.85 71.98 0.64 -1.87 16 2 C -0.10 -2.75 2.69 -10.80 -0.03 -2.77 16 3 C -0.14 -4.78 8.26 71.98 0.59 -4.19 16 4 C 0.18 5.40 2.02 44.99 0.09 5.49 16 5 H 0.04 1.30 8.08 -2.39 -0.02 1.28 16 6 C -0.12 -2.30 4.65 30.59 0.14 -2.16 16 7 C 0.13 3.13 5.57 86.38 0.48 3.62 16 8 N -0.71 -10.94 5.51 -466.49 -2.57 -13.51 16 9 C 0.57 13.03 7.75 86.63 0.67 13.71 16 10 O -0.57 -19.99 15.32 16.15 0.25 -19.74 16 11 C -0.32 -5.25 5.90 -19.91 -0.12 -5.36 16 12 C 0.29 1.59 9.90 84.23 0.83 2.42 16 13 N -0.51 -5.23 2.96 -679.95 -2.01 -7.24 16 14 C 0.05 0.08 10.35 127.77 1.32 1.40 16 15 C 0.65 14.77 8.32 179.61 1.49 16.26 16 16 O -0.57 -17.21 16.67 -5.03 -0.08 -17.29 16 17 N -0.65 -15.89 10.38 -438.20 -4.55 -20.44 16 18 C 0.49 10.68 7.93 85.59 0.68 11.35 16 19 O -0.43 -9.61 11.78 -62.50 -0.74 -10.35 16 20 N -0.75 -30.68 4.26 -322.93 -1.37 -32.06 16 21 C -0.20 -10.49 8.05 84.03 0.68 -9.82 16 22 H 0.06 3.55 7.63 -2.91 -0.02 3.53 16 23 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 24 N -0.99 -63.59 13.97 21.65 0.30 -63.29 16 25 Si 0.94 45.20 27.74 68.60 1.90 47.10 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 28 H -0.25 -10.73 6.52 99.48 0.65 -10.09 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 0.95 6.32 -2.39 -0.02 0.94 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 1.85 6.01 -2.39 -0.01 1.84 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.12 1.23 6.17 -2.39 -0.01 1.22 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.33 7.75 -2.39 -0.02 1.31 16 40 H 0.42 1.50 6.58 -92.71 -0.61 0.89 16 41 H 0.25 -2.04 6.48 -2.91 -0.02 -2.06 16 42 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.08 0.56 7.36 -2.38 -0.02 0.54 16 44 H 0.15 -1.21 8.02 -2.39 -0.02 -1.23 16 45 H 0.43 5.80 8.98 -74.06 -0.67 5.14 16 46 H 0.36 14.47 5.66 -92.71 -0.52 13.95 16 47 H 0.25 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -97.06 383.52 -1.75 -98.82 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -0.82 Total: 13.64 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 7.94 Total: 24.37 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -10.20 Total: -136.55 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.57 Total: -47.38 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Total: -97.06 -1.75 -98.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485793174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.247 kcal (2) G-P(sol) polarization free energy of solvation -97.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds