Wall clock time and date at job start Tue Mar 31 2020 21:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34951 * 119.70146 * 2 1 4 4 C 1.38316 * 119.01776 * 180.02562 * 3 2 1 5 5 C 1.47314 * 120.73675 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99961 * 185.04447 * 5 4 3 7 7 N 1.34772 * 119.99676 * 5.04599 * 5 4 3 8 8 C 1.46500 * 119.99956 * 174.74879 * 7 5 4 9 9 H 1.08999 * 109.47338 * 34.99716 * 8 7 5 10 10 C 1.52996 * 109.47384 * 155.00016 * 8 7 5 11 11 N 1.46502 * 109.46901 * 304.99786 * 10 8 7 12 12 C 1.36940 * 120.00300 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.00286 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99768 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99906 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47065 * 59.99857 * 16 14 12 18 18 H 1.48501 * 109.46745 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46880 * 299.99514 * 16 14 12 20 20 C 1.53002 * 109.46992 * 274.99749 * 8 7 5 21 21 C 1.53002 * 109.47159 * 299.99937 * 20 8 7 22 22 C 1.53005 * 109.47226 * 60.00010 * 20 8 7 23 23 C 1.52995 * 109.47203 * 179.97438 * 20 8 7 24 24 C 1.42097 * 118.53042 * 0.25466 * 4 3 2 25 25 O 1.35011 * 120.33742 * 179.74807 * 24 4 3 26 26 N 1.32226 * 119.32920 * 359.48456 * 24 4 3 27 27 C 1.33323 * 120.92707 * 0.52415 * 26 24 4 28 28 O 1.21911 * 119.19936 * 179.69943 * 27 26 24 29 29 H 1.08998 * 109.46942 * 89.99697 * 1 2 3 30 30 H 1.09002 * 109.46936 * 209.99594 * 1 2 3 31 31 H 1.08994 * 109.47223 * 329.99815 * 1 2 3 32 32 H 1.07999 * 120.48960 * 0.04578 * 3 2 1 33 33 H 0.97000 * 120.00425 * 354.74449 * 7 5 4 34 34 H 1.08996 * 109.47270 * 64.99336 * 10 8 7 35 35 H 1.08999 * 109.47483 * 185.00336 * 10 8 7 36 36 H 0.97003 * 120.00289 * 359.97438 * 11 10 8 37 37 H 0.97005 * 119.99427 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.46984 * 59.99981 * 21 20 8 39 39 H 1.08999 * 109.47288 * 179.97438 * 21 20 8 40 40 H 1.09000 * 109.47033 * 299.99918 * 21 20 8 41 41 H 1.08999 * 109.46994 * 59.99541 * 22 20 8 42 42 H 1.08999 * 109.47307 * 180.02562 * 22 20 8 43 43 H 1.09004 * 109.46811 * 299.99656 * 22 20 8 44 44 H 1.09000 * 109.47099 * 60.00015 * 23 20 8 45 45 H 1.09007 * 109.47292 * 179.97438 * 23 20 8 46 46 H 1.08999 * 109.47379 * 300.00120 * 23 20 8 47 47 H 0.96700 * 114.00153 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1557 -0.0005 5 6 4.2848 2.4128 -0.0011 6 8 5.4970 2.3848 -0.0942 7 7 3.6439 3.5940 0.1015 8 6 4.4116 4.8363 0.2168 9 1 5.3220 4.7574 -0.3773 10 6 3.5687 6.0062 -0.2946 11 7 3.1174 5.7230 -1.6593 12 6 2.3430 6.6337 -2.3273 13 1 2.0646 7.5605 -1.8479 14 6 1.9150 6.3651 -3.6202 15 7 2.2538 5.2353 -4.2042 16 14 0.8580 7.6071 -4.5311 17 1 1.5976 8.8886 -4.6569 18 1 0.5373 7.0862 -5.8842 19 1 -0.4006 7.8339 -3.7764 20 6 4.7786 5.0748 1.6829 21 6 3.5007 5.1857 2.5170 22 6 5.6217 3.9049 2.1945 23 6 5.5810 6.3719 1.8033 24 6 4.1805 -0.1007 -0.0066 25 8 5.5294 -0.1594 -0.0125 26 7 3.4638 -1.2119 -0.0012 27 6 2.1313 -1.1678 -0.0006 28 8 1.5017 -2.2117 -0.0011 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.5969 2.1093 0.0007 33 1 2.6743 3.6216 0.0990 34 1 2.7029 6.1410 0.3537 35 1 4.1696 6.9156 -0.2921 36 1 3.3677 4.8907 -2.0901 37 1 1.9550 5.0478 -5.1078 38 1 2.9295 4.2613 2.4312 39 1 3.7621 5.3551 3.5615 40 1 2.9002 6.0191 2.1526 41 1 6.5320 3.8259 1.6002 42 1 5.8827 4.0746 3.2391 43 1 5.0503 2.9806 2.1087 44 1 4.9808 7.2056 1.4388 45 1 5.8420 6.5421 2.8479 46 1 6.4913 6.2925 1.2092 47 1 5.8839 -1.0590 -0.0167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486424998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:45 Heat of formation + Delta-G solvation = -51.976999 kcal Electronic energy + Delta-G solvation = -31008.312021 eV Core-core repulsion = 26806.867005 eV Total energy + Delta-G solvation = -4201.445015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07472 -40.06814 -38.84571 -37.38463 -36.87419 -34.81528 -34.50735 -33.42827 -31.68520 -30.87097 -27.96748 -27.73063 -27.19621 -26.70146 -25.22583 -24.21897 -23.44838 -21.63083 -20.89888 -19.94715 -18.87203 -18.27965 -18.04623 -17.06943 -16.86948 -16.28245 -15.91793 -15.53056 -15.35757 -14.89153 -14.72133 -14.62256 -14.02182 -13.89702 -13.84886 -13.59075 -13.49373 -13.38225 -13.18761 -12.91593 -12.77397 -12.25139 -12.02916 -11.86448 -11.75925 -11.42976 -11.26797 -11.18839 -11.09721 -10.87031 -10.78983 -10.59320 -10.32890 -10.27554 -10.22101 -10.01171 -9.81687 -9.65422 -8.97474 -8.87424 -8.61952 -7.03572 -5.86284 -3.16207 0.32913 1.10950 2.08737 2.98164 3.10328 3.26975 3.36160 3.41910 3.42758 3.66169 3.88460 4.11843 4.48290 4.52430 4.76223 4.88737 4.92390 4.94779 4.98736 5.06797 5.16170 5.28920 5.45826 5.50638 5.62471 5.70035 5.73360 5.84178 5.87306 5.97467 6.00258 6.02035 6.07326 6.11782 6.24654 6.39884 6.41005 6.43526 6.57606 6.66774 6.88314 6.97951 7.50891 7.59852 7.72087 7.90698 8.31591 8.44164 9.43627 9.99415 10.34581 11.35646 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008645 B = 0.004334 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.108023 B = 6459.580472 C = 8509.509368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.517 5.517 3 C 0.246 3.754 4 C -0.292 4.292 5 C 0.580 3.420 6 O -0.514 6.514 7 N -0.709 5.709 8 C 0.151 3.849 9 H 0.091 0.909 10 C 0.141 3.859 11 N -0.732 5.732 12 C -0.243 4.243 13 H 0.070 0.930 14 C -0.010 4.010 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.077 4.077 21 C -0.141 4.141 22 C -0.131 4.131 23 C -0.141 4.141 24 C 0.496 3.504 25 O -0.410 6.410 26 N -0.619 5.619 27 C 0.655 3.345 28 O -0.531 6.531 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.189 0.811 33 H 0.396 0.604 34 H 0.029 0.971 35 H 0.036 0.964 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -5.626 14.369 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.230 5.230 3 C 0.105 3.895 4 C -0.305 4.305 5 C 0.365 3.635 6 O -0.390 6.390 7 N -0.360 5.360 8 C 0.047 3.953 9 H 0.109 0.891 10 C 0.014 3.986 11 N -0.377 5.377 12 C -0.374 4.374 13 H 0.088 0.912 14 C -0.206 4.206 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.213 1.213 20 C -0.078 4.078 21 C -0.198 4.198 22 C -0.188 4.188 23 C -0.199 4.199 24 C 0.294 3.706 25 O -0.201 6.201 26 N -0.377 5.377 27 C 0.357 3.643 28 O -0.405 6.405 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.206 0.794 33 H 0.231 0.769 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 0.930 -6.480 14.261 15.692 hybrid contribution -1.229 0.637 -0.871 1.636 sum -0.299 -5.843 13.390 14.612 Atomic orbital electron populations 1.22360 0.75408 1.05677 1.05107 1.46225 1.11068 1.07104 1.58641 1.22952 0.91966 0.91374 0.83252 1.19829 0.91739 0.94478 1.24460 1.17105 0.87221 0.82192 0.76952 1.90839 1.12778 1.86555 1.48851 1.45767 1.10044 1.05756 1.74476 1.21292 0.96105 0.83159 0.94773 0.89119 1.21103 0.95428 0.94159 0.87960 1.42368 1.61766 1.22514 1.11015 1.19149 1.23521 0.98710 0.96048 0.91230 1.24730 1.01257 0.97418 0.97237 1.69653 1.49911 1.23916 1.14408 0.86297 0.80239 0.80699 0.79085 1.21233 1.21732 1.21297 1.20905 0.95813 0.96088 0.95024 1.21911 0.97070 1.01824 0.99022 1.21872 1.00151 0.97163 0.99618 1.21883 1.00072 0.96589 1.01311 1.20204 0.84857 0.88132 0.77424 1.85288 1.14038 1.36038 1.84756 1.69706 1.05497 1.27324 1.35218 1.17431 0.84752 0.82967 0.79163 1.90984 1.65986 1.30043 1.53519 0.89500 0.88092 0.88816 0.79380 0.76912 0.95380 0.94610 0.78040 0.93415 0.93060 0.93173 0.91854 0.91886 0.93853 0.93078 0.91886 0.92893 0.92473 0.73348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.35 59.85 0.62 1.03 16 2 N -0.52 -5.62 2.96 -128.87 -0.38 -6.00 16 3 C 0.25 2.43 9.90 -16.15 -0.16 2.27 16 4 C -0.29 -3.71 5.90 -104.70 -0.62 -4.32 16 5 C 0.58 8.45 5.91 -12.57 -0.07 8.38 16 6 O -0.51 -8.99 12.86 -15.91 -0.20 -9.20 16 7 N -0.71 -9.54 3.59 -54.92 -0.20 -9.74 16 8 C 0.15 2.23 1.69 -67.93 -0.12 2.11 16 9 H 0.09 1.59 7.51 -51.93 -0.39 1.20 16 10 C 0.14 2.43 5.10 -4.04 -0.02 2.41 16 11 N -0.73 -16.50 5.43 -59.91 -0.33 -16.82 16 12 C -0.24 -6.23 9.99 -15.06 -0.15 -6.38 16 13 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 14 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 15 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 16 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.08 -0.93 0.62 -154.51 -0.10 -1.02 16 21 C -0.14 -1.49 7.97 37.16 0.30 -1.19 16 22 C -0.13 -1.64 7.06 37.16 0.26 -1.38 16 23 C -0.14 -1.61 8.12 37.16 0.30 -1.31 16 24 C 0.50 6.62 7.93 -15.90 -0.13 6.50 16 25 O -0.41 -4.98 11.78 -37.93 -0.45 -5.43 16 26 N -0.62 -9.09 10.38 -16.47 -0.17 -9.26 16 27 C 0.65 9.78 8.32 -88.50 -0.74 9.04 16 28 O -0.53 -9.41 16.67 5.00 0.08 -9.33 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.10 0.80 7.36 -51.93 -0.38 0.42 16 31 H 0.09 0.38 8.02 -51.93 -0.42 -0.04 16 32 H 0.19 1.24 6.48 -52.49 -0.34 0.90 16 33 H 0.40 4.68 6.71 -40.82 -0.27 4.41 16 34 H 0.03 0.46 6.17 -51.93 -0.32 0.14 16 35 H 0.04 0.64 6.71 -51.93 -0.35 0.29 16 36 H 0.39 9.39 7.33 -40.82 -0.30 9.09 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.05 0.51 7.60 -51.93 -0.39 0.11 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 41 H 0.06 0.89 7.63 -51.93 -0.40 0.50 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.68 5.86 -51.93 -0.30 0.37 16 44 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 45 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.41 3.04 8.98 45.56 0.41 3.45 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -35.78 378.04 -6.74 -42.52 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.78 Total: 11.46 kcal Atomic # 6 Polarization: 16.48 SS G_CDS: -0.71 Total: 15.77 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -0.35 Total: -67.66 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.57 Total: -23.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.78 -6.74 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486424998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.460 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds