Wall clock time and date at job start Tue Mar 31 2020 21:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34951 * 119.70146 * 2 1 4 4 C 1.38316 * 119.01776 * 180.02562 * 3 2 1 5 5 C 1.47314 * 120.73675 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99961 * 185.04447 * 5 4 3 7 7 N 1.34772 * 119.99676 * 5.04599 * 5 4 3 8 8 C 1.46500 * 119.99956 * 174.74879 * 7 5 4 9 9 H 1.08999 * 109.47338 * 34.99716 * 8 7 5 10 10 C 1.52996 * 109.47384 * 155.00016 * 8 7 5 11 11 N 1.46502 * 109.46901 * 304.99786 * 10 8 7 12 12 C 1.36940 * 120.00300 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99833 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.00286 * 180.02562 * 12 11 10 15 15 N 1.31617 * 119.99768 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99906 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47065 * 59.99857 * 16 14 12 18 18 H 1.48501 * 109.46745 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46880 * 299.99514 * 16 14 12 20 20 C 1.53002 * 109.46992 * 274.99749 * 8 7 5 21 21 C 1.53002 * 109.47159 * 299.99937 * 20 8 7 22 22 C 1.53005 * 109.47226 * 60.00010 * 20 8 7 23 23 C 1.52995 * 109.47203 * 179.97438 * 20 8 7 24 24 C 1.42097 * 118.53042 * 0.25466 * 4 3 2 25 25 O 1.35011 * 120.33742 * 179.74807 * 24 4 3 26 26 N 1.32226 * 119.32920 * 359.48456 * 24 4 3 27 27 C 1.33323 * 120.92707 * 0.52415 * 26 24 4 28 28 O 1.21911 * 119.19936 * 179.69943 * 27 26 24 29 29 H 1.08998 * 109.46942 * 89.99697 * 1 2 3 30 30 H 1.09002 * 109.46936 * 209.99594 * 1 2 3 31 31 H 1.08994 * 109.47223 * 329.99815 * 1 2 3 32 32 H 1.07999 * 120.48960 * 0.04578 * 3 2 1 33 33 H 0.97000 * 120.00425 * 354.74449 * 7 5 4 34 34 H 1.08996 * 109.47270 * 64.99336 * 10 8 7 35 35 H 1.08999 * 109.47483 * 185.00336 * 10 8 7 36 36 H 0.97003 * 120.00289 * 359.97438 * 11 10 8 37 37 H 0.97005 * 119.99427 * 180.02562 * 15 14 12 38 38 H 1.09001 * 109.46984 * 59.99981 * 21 20 8 39 39 H 1.08999 * 109.47288 * 179.97438 * 21 20 8 40 40 H 1.09000 * 109.47033 * 299.99918 * 21 20 8 41 41 H 1.08999 * 109.46994 * 59.99541 * 22 20 8 42 42 H 1.08999 * 109.47307 * 180.02562 * 22 20 8 43 43 H 1.09004 * 109.46811 * 299.99656 * 22 20 8 44 44 H 1.09000 * 109.47099 * 60.00015 * 23 20 8 45 45 H 1.09007 * 109.47292 * 179.97438 * 23 20 8 46 46 H 1.08999 * 109.47379 * 300.00120 * 23 20 8 47 47 H 0.96700 * 114.00153 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1337 1.1722 0.0000 4 6 3.5168 1.1557 -0.0005 5 6 4.2848 2.4128 -0.0011 6 8 5.4970 2.3848 -0.0942 7 7 3.6439 3.5940 0.1015 8 6 4.4116 4.8363 0.2168 9 1 5.3220 4.7574 -0.3773 10 6 3.5687 6.0062 -0.2946 11 7 3.1174 5.7230 -1.6593 12 6 2.3430 6.6337 -2.3273 13 1 2.0646 7.5605 -1.8479 14 6 1.9150 6.3651 -3.6202 15 7 2.2538 5.2353 -4.2042 16 14 0.8580 7.6071 -4.5311 17 1 1.5976 8.8886 -4.6569 18 1 0.5373 7.0862 -5.8842 19 1 -0.4006 7.8339 -3.7764 20 6 4.7786 5.0748 1.6829 21 6 3.5007 5.1857 2.5170 22 6 5.6217 3.9049 2.1945 23 6 5.5810 6.3719 1.8033 24 6 4.1805 -0.1007 -0.0066 25 8 5.5294 -0.1594 -0.0125 26 7 3.4638 -1.2119 -0.0012 27 6 2.1313 -1.1678 -0.0006 28 8 1.5017 -2.2117 -0.0011 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.5969 2.1093 0.0007 33 1 2.6743 3.6216 0.0990 34 1 2.7029 6.1410 0.3537 35 1 4.1696 6.9156 -0.2921 36 1 3.3677 4.8907 -2.0901 37 1 1.9550 5.0478 -5.1078 38 1 2.9295 4.2613 2.4312 39 1 3.7621 5.3551 3.5615 40 1 2.9002 6.0191 2.1526 41 1 6.5320 3.8259 1.6002 42 1 5.8827 4.0746 3.2391 43 1 5.0503 2.9806 2.1087 44 1 4.9808 7.2056 1.4388 45 1 5.8420 6.5421 2.8479 46 1 6.4913 6.2925 1.2092 47 1 5.8839 -1.0590 -0.0167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486424998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:44 Heat of formation + Delta-G solvation = -81.345399 kcal Electronic energy + Delta-G solvation = -31009.585530 eV Core-core repulsion = 26806.867005 eV Total energy + Delta-G solvation = -4202.718525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.07761 -41.20934 -39.85505 -38.50281 -38.00159 -36.12387 -35.78089 -34.67858 -33.12472 -32.25735 -29.25341 -28.62869 -28.06067 -27.75384 -26.19635 -25.74706 -24.70455 -23.04541 -22.01438 -20.94779 -19.91925 -19.42100 -19.28627 -18.54416 -17.86146 -17.35649 -17.06913 -16.82621 -16.49529 -16.22945 -15.79301 -15.61485 -15.42006 -15.16119 -14.85945 -14.77685 -14.60829 -14.55673 -14.33914 -14.12542 -13.61289 -13.49981 -13.02218 -12.96313 -12.86825 -12.66917 -12.63494 -12.43089 -12.29835 -12.27963 -12.16033 -11.94592 -11.69183 -11.56870 -11.32923 -11.28816 -11.20981 -10.90281 -10.76538 -9.97520 -9.71689 -8.91356 -7.88184 -5.16051 -0.56856 0.03864 1.20505 1.52722 1.54897 1.60246 1.96885 2.04361 2.20206 2.59988 2.61465 2.96833 3.30185 3.46670 3.58223 3.74221 3.92150 4.01723 4.09550 4.13512 4.22654 4.33912 4.38950 4.43496 4.56195 4.72825 4.75106 4.85050 4.90051 4.92364 4.99869 5.05068 5.07250 5.15114 5.17467 5.26040 5.32686 5.40168 5.50943 5.58614 5.63498 5.72131 6.13387 6.32603 6.46577 6.63250 6.86871 7.33325 7.41154 8.16110 8.39165 9.34192 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008645 B = 0.004334 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.108023 B = 6459.580472 C = 8509.509368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.509 5.509 3 C 0.274 3.726 4 C -0.315 4.315 5 C 0.583 3.417 6 O -0.550 6.550 7 N -0.701 5.701 8 C 0.161 3.839 9 H 0.057 0.943 10 C 0.144 3.856 11 N -0.741 5.741 12 C -0.236 4.236 13 H 0.079 0.921 14 C -0.069 4.069 15 N -0.967 5.967 16 Si 0.964 3.036 17 H -0.285 1.285 18 H -0.304 1.304 19 H -0.273 1.273 20 C -0.070 4.070 21 C -0.138 4.138 22 C -0.122 4.122 23 C -0.140 4.140 24 C 0.495 3.505 25 O -0.419 6.419 26 N -0.642 5.642 27 C 0.647 3.353 28 O -0.570 6.570 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.229 0.771 33 H 0.406 0.594 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.374 0.626 37 H 0.248 0.752 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -3.926 16.141 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.220 5.220 3 C 0.132 3.868 4 C -0.327 4.327 5 C 0.370 3.630 6 O -0.428 6.428 7 N -0.353 5.353 8 C 0.056 3.944 9 H 0.075 0.925 10 C 0.018 3.982 11 N -0.384 5.384 12 C -0.367 4.367 13 H 0.097 0.903 14 C -0.262 4.262 15 N -0.618 5.618 16 Si 0.795 3.205 17 H -0.211 1.211 18 H -0.230 1.230 19 H -0.199 1.199 20 C -0.072 4.072 21 C -0.195 4.195 22 C -0.180 4.180 23 C -0.198 4.198 24 C 0.295 3.705 25 O -0.212 6.212 26 N -0.402 5.402 27 C 0.349 3.651 28 O -0.448 6.448 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.155 0.845 32 H 0.246 0.754 33 H 0.243 0.757 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.722 -4.734 16.086 16.783 hybrid contribution -0.660 0.152 -1.363 1.522 sum -1.381 -4.582 14.722 15.481 Atomic orbital electron populations 1.22724 0.72906 1.07524 1.06090 1.46223 1.12539 1.06277 1.56923 1.23432 0.91094 0.92152 0.80099 1.19705 0.92899 0.93297 1.26791 1.17268 0.86889 0.82755 0.76128 1.90825 1.14397 1.87051 1.50555 1.45628 1.10445 1.05101 1.74112 1.21074 0.94349 0.82831 0.96128 0.92475 1.21241 0.96304 0.94968 0.85716 1.42538 1.61452 1.21602 1.12853 1.19547 1.22163 0.99014 0.96021 0.90349 1.25407 1.03324 0.99038 0.98403 1.69805 1.51892 1.25815 1.14257 0.85350 0.79253 0.78551 0.77393 1.21144 1.23037 1.19925 1.20853 0.96925 0.96202 0.93195 1.21886 0.95846 1.02285 0.99462 1.21768 0.99027 0.96959 1.00213 1.21888 0.99466 0.96060 1.02397 1.20300 0.85073 0.88155 0.76971 1.85272 1.13783 1.37723 1.84436 1.69601 1.05978 1.28239 1.36420 1.17540 0.84882 0.83595 0.79056 1.90949 1.66684 1.31600 1.55545 0.88931 0.88825 0.84485 0.75447 0.75701 0.93067 0.94782 0.79358 0.94357 0.92210 0.91613 0.91812 0.94240 0.92054 0.93876 0.91953 0.90939 0.93618 0.71453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.35 127.77 1.32 1.90 16 2 N -0.51 -10.13 2.96 -679.95 -2.01 -12.14 16 3 C 0.27 4.76 9.90 84.23 0.83 5.60 16 4 C -0.31 -7.68 5.90 -19.91 -0.12 -7.80 16 5 C 0.58 16.67 5.91 86.63 0.51 17.18 16 6 O -0.55 -19.59 12.86 16.19 0.21 -19.38 16 7 N -0.70 -17.83 3.59 -445.93 -1.60 -19.43 16 8 C 0.16 4.59 1.69 44.99 0.08 4.66 16 9 H 0.06 2.04 7.51 -2.39 -0.02 2.02 16 10 C 0.14 4.68 5.10 86.38 0.44 5.12 16 11 N -0.74 -32.54 5.43 -343.46 -1.87 -34.40 16 12 C -0.24 -11.70 9.99 84.03 0.84 -10.86 16 13 H 0.08 3.70 7.83 -2.91 -0.02 3.68 16 14 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 15 N -0.97 -55.28 13.06 21.65 0.28 -55.00 16 16 Si 0.96 42.95 29.55 68.60 2.03 44.98 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 20 C -0.07 -1.56 0.62 -52.18 -0.03 -1.59 16 21 C -0.14 -2.40 7.97 71.98 0.57 -1.83 16 22 C -0.12 -2.92 7.06 71.98 0.51 -2.41 16 23 C -0.14 -2.94 8.12 71.98 0.58 -2.35 16 24 C 0.50 13.27 7.93 85.59 0.68 13.95 16 25 O -0.42 -10.41 11.78 -62.58 -0.74 -11.15 16 26 N -0.64 -19.06 10.38 -438.19 -4.55 -23.61 16 27 C 0.65 19.19 8.32 179.61 1.49 20.68 16 28 O -0.57 -20.49 16.67 -5.03 -0.08 -20.57 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.34 7.36 -2.39 -0.02 1.33 16 31 H 0.14 0.48 8.02 -2.39 -0.02 0.46 16 32 H 0.23 2.02 6.48 -2.91 -0.02 2.00 16 33 H 0.41 8.46 6.71 -92.71 -0.62 7.84 16 34 H 0.05 1.49 6.17 -2.39 -0.01 1.47 16 35 H 0.03 1.15 6.71 -2.39 -0.02 1.14 16 36 H 0.37 18.09 7.33 -92.71 -0.68 17.41 16 37 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 38 H 0.06 0.95 7.60 -2.39 -0.02 0.93 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.12 6.32 -2.39 -0.02 1.11 16 41 H 0.04 1.12 7.63 -2.39 -0.02 1.10 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 1.09 5.86 -2.38 -0.01 1.08 16 44 H 0.06 1.31 6.54 -2.39 -0.02 1.29 16 45 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.43 6.62 8.98 -74.06 -0.67 5.95 16 Total: -1.00 -78.87 378.04 -1.07 -79.95 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.92 Total: 31.70 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 8.18 Total: 39.07 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -9.75 Total: -144.59 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -0.61 Total: -51.11 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -78.87 -1.07 -79.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486424998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.399 kcal (2) G-P(sol) polarization free energy of solvation -78.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds