Wall clock time and date at job start Tue Mar 31 2020 20:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46901 * 2 1 4 4 N 1.30625 * 125.42588 * 90.02657 * 3 2 1 5 5 C 1.33684 * 108.99574 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.27085 * 180.02562 * 5 4 3 7 7 C 1.36344 * 107.45472 * 0.02562 * 5 4 3 8 8 C 1.46728 * 126.64288 * 179.97438 * 7 5 4 9 9 O 1.21684 * 119.99802 * 352.60364 * 8 7 5 10 10 N 1.34774 * 119.99653 * 172.60553 * 8 7 5 11 11 C 1.46493 * 120.00353 * 3.63708 * 10 8 7 12 12 C 1.46504 * 119.99484 * 183.63985 * 10 8 7 13 13 C 1.53005 * 109.47132 * 89.99834 * 12 10 8 14 14 N 1.46900 * 109.47186 * 179.97438 * 13 12 10 15 15 C 1.46900 * 111.00197 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.46923 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00467 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99673 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00219 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99551 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00112 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99866 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47410 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47332 * 120.00037 * 23 21 19 26 26 H 1.48497 * 109.47220 * 240.00234 * 23 21 19 27 27 O 1.33668 * 125.42414 * 269.97249 * 3 2 1 28 28 H 1.08997 * 109.47207 * 60.00249 * 1 2 3 29 29 H 1.09000 * 109.46561 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46972 * 300.00270 * 1 2 3 31 31 H 1.08993 * 109.47359 * 240.00109 * 2 1 3 32 32 H 1.08997 * 109.47207 * 119.99751 * 2 1 3 33 33 H 1.09000 * 109.47205 * 89.97896 * 6 5 4 34 34 H 1.09000 * 109.46679 * 209.97480 * 6 5 4 35 35 H 1.08995 * 109.47163 * 329.97438 * 6 5 4 36 36 H 1.08998 * 109.47168 * 83.96480 * 11 10 8 37 37 H 1.08994 * 109.47285 * 203.96711 * 11 10 8 38 38 H 1.09003 * 109.46996 * 323.96902 * 11 10 8 39 39 H 1.08995 * 109.46666 * 209.99950 * 12 10 8 40 40 H 1.08998 * 109.46994 * 329.99813 * 12 10 8 41 41 H 1.08996 * 109.47346 * 300.00188 * 13 12 10 42 42 H 1.09005 * 109.46997 * 59.99755 * 13 12 10 43 43 H 1.00902 * 110.99694 * 56.04813 * 14 13 12 44 44 H 1.08995 * 109.47108 * 300.00314 * 15 14 13 45 45 H 1.09002 * 109.46976 * 60.00122 * 15 14 13 46 46 H 0.97000 * 119.99806 * 359.97438 * 18 16 15 47 47 H 0.97006 * 119.99954 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1345 1.0644 5 6 2.7129 3.3433 0.6863 6 6 3.1136 4.4732 1.5995 7 6 2.7202 3.3666 -0.6769 8 6 3.1173 4.4914 -1.5314 9 8 3.3575 5.5766 -1.0361 10 7 3.2161 4.3224 -2.8649 11 6 2.8504 3.0393 -3.4698 12 6 3.6892 5.4221 -3.7094 13 6 5.2112 5.3430 -3.8444 14 7 5.6856 6.4453 -4.6917 15 6 7.1459 6.4010 -4.8446 16 6 7.5944 7.5439 -5.7184 17 8 6.7779 8.3194 -6.1692 18 7 8.9028 7.7044 -5.9991 19 6 9.3110 8.7444 -6.7936 20 1 8.5839 9.4349 -7.1950 21 6 10.6600 8.9101 -7.0825 22 7 11.5446 8.0703 -6.5938 23 14 11.2159 10.3268 -8.1657 24 1 10.0344 11.1228 -8.5849 25 1 12.1517 11.1937 -7.4054 26 1 11.9037 9.7906 -9.3676 27 8 2.2911 2.1511 -1.0892 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.1788 4.4025 1.8194 34 1 2.9058 5.4256 1.1118 35 1 2.5459 4.4089 2.5278 36 1 1.7734 3.0092 -3.6348 37 1 3.3672 2.9264 -4.4227 38 1 3.1384 2.2275 -2.8018 39 1 3.2324 5.3448 -4.6960 40 1 3.4136 6.3737 -3.2550 41 1 5.6680 5.4202 -2.8578 42 1 5.4867 4.3913 -4.2989 43 1 5.3868 7.3369 -4.3259 44 1 7.6165 6.4857 -3.8650 45 1 7.4345 5.4565 -5.3058 46 1 9.5558 7.0844 -5.6383 47 1 12.4863 8.1858 -6.7958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493752681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:42 Heat of formation + Delta-G solvation = -46.391652 kcal Electronic energy + Delta-G solvation = -28452.215022 eV Core-core repulsion = 24251.012205 eV Total energy + Delta-G solvation = -4201.202817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.87719 -40.06263 -38.28474 -36.72280 -35.75351 -34.89371 -34.73026 -33.81130 -31.35122 -31.19265 -30.01965 -28.19906 -27.12773 -26.09920 -25.10322 -23.97199 -22.59096 -21.94960 -21.54931 -20.26918 -19.22143 -17.93058 -17.81249 -17.45274 -16.64885 -16.55441 -16.24618 -15.55950 -15.37991 -15.16256 -14.83995 -14.52850 -14.38851 -13.96229 -13.78567 -13.69822 -13.57801 -13.44848 -13.24056 -13.19203 -13.16315 -12.65985 -12.53790 -12.28821 -12.21719 -12.05144 -11.82840 -11.54274 -11.49941 -11.35272 -11.20353 -11.09168 -10.99670 -10.42221 -10.33410 -10.21733 -9.51317 -9.32694 -8.97890 -8.46493 -8.09707 -7.95468 -6.41019 -3.81819 0.42798 1.93312 1.98832 2.58248 2.74855 3.17212 3.27717 3.35206 3.38961 3.91458 4.07262 4.14893 4.29625 4.40025 4.49315 4.50325 4.61625 4.80709 4.90704 4.97220 5.03333 5.10288 5.16771 5.18293 5.19609 5.26973 5.28402 5.36815 5.41818 5.45027 5.52817 5.56540 5.67329 5.70486 5.81552 5.83115 5.97457 5.98736 6.12116 6.27376 6.84792 7.14746 7.20630 7.56248 7.60222 7.66707 8.07224 8.61893 9.18642 9.54968 10.06278 10.76815 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.001681 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.702402 B =16657.655867 C =16868.251364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.031 4.031 3 C 0.216 3.784 4 N -0.487 5.487 5 C 0.084 3.916 6 C -0.085 4.085 7 C -0.118 4.118 8 C 0.607 3.393 9 O -0.510 6.510 10 N -0.603 5.603 11 C 0.073 3.927 12 C 0.117 3.883 13 C 0.045 3.955 14 N -0.666 5.666 15 C 0.052 3.948 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 O -0.182 6.182 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.035 -19.631 14.202 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.069 4.069 3 C 0.011 3.989 4 N -0.217 5.217 5 C -0.040 4.040 6 C -0.142 4.142 7 C -0.173 4.173 8 C 0.394 3.606 9 O -0.387 6.387 10 N -0.336 5.336 11 C -0.069 4.069 12 C -0.005 4.005 13 C -0.086 4.086 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 O -0.070 6.070 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.452 -19.090 14.056 31.309 hybrid contribution 1.269 0.539 -0.183 1.391 sum -19.182 -18.551 13.872 30.075 Atomic orbital electron populations 1.21792 0.92626 1.03315 1.03169 1.20201 0.97176 0.83805 1.05675 1.26670 0.96426 0.96745 0.79077 1.70359 1.17734 1.03603 1.30016 1.22096 0.96748 0.93876 0.91255 1.20444 1.02120 0.94050 0.97549 1.22839 1.13276 0.86119 0.95054 1.16455 0.77699 0.85125 0.81355 1.90875 1.50641 1.23832 1.73333 1.47689 1.64813 1.15163 1.05904 1.22043 1.00960 0.84283 0.99644 1.21537 0.94311 0.89781 0.94876 1.22264 0.94544 0.96186 0.95559 1.60009 1.11129 1.06499 1.52264 1.21657 0.88034 0.99649 0.98704 1.19781 0.83396 0.87928 0.86221 1.90524 1.52566 1.47091 1.56490 1.41868 1.05654 1.27571 1.44964 1.19768 0.92340 1.05722 1.25027 0.87820 1.25267 0.95578 0.98764 0.98380 1.69623 1.02397 1.37047 1.45264 0.85790 0.78735 0.80500 0.79255 1.19198 1.20778 1.20755 1.84652 1.63700 1.22078 1.36527 0.91968 0.90543 0.91631 0.88424 0.87261 0.89918 0.88354 0.90352 0.92087 0.89850 0.90319 0.88749 0.89187 0.95054 0.91009 0.82880 0.93759 0.89611 0.77461 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.90 37.16 0.37 -0.15 16 2 C -0.03 -0.13 6.56 -27.88 -0.18 -0.31 16 3 C 0.22 1.84 7.57 -12.79 -0.10 1.74 16 4 N -0.49 -5.27 11.26 -7.07 -0.08 -5.35 16 5 C 0.08 0.97 7.16 -82.47 -0.59 0.37 16 6 C -0.08 -0.83 9.96 36.01 0.36 -0.47 16 7 C -0.12 -1.35 6.79 -36.84 -0.25 -1.60 16 8 C 0.61 7.56 7.64 -12.83 -0.10 7.46 16 9 O -0.51 -7.56 14.33 5.20 0.07 -7.48 16 10 N -0.60 -6.40 2.87 -183.11 -0.53 -6.92 16 11 C 0.07 0.55 9.65 59.84 0.58 1.13 16 12 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 13 C 0.05 0.59 6.01 -3.82 -0.02 0.56 16 14 N -0.67 -10.96 6.12 -115.06 -0.70 -11.66 16 15 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 16 C 0.44 10.60 7.82 -10.99 -0.09 10.51 16 17 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 18 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 19 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 O -0.18 -1.70 7.51 4.44 0.03 -1.67 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.06 6.34 -51.93 -0.33 0.73 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 38 H 0.08 0.59 5.42 -51.93 -0.28 0.30 16 39 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 40 H 0.09 1.13 7.37 -51.93 -0.38 0.74 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.35 6.04 8.43 -39.29 -0.33 5.71 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -34.46 397.88 -6.86 -41.32 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.07 Total: 10.72 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -0.32 Total: 13.38 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.64 Total: -62.52 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.20 Total: -25.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.46 -6.86 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493752681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.075 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds