Wall clock time and date at job start Tue Mar 31 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46901 * 2 1 4 4 N 1.30625 * 125.42588 * 90.02657 * 3 2 1 5 5 C 1.33684 * 108.99574 * 179.97438 * 4 3 2 6 6 C 1.50706 * 126.27085 * 180.02562 * 5 4 3 7 7 C 1.36344 * 107.45472 * 0.02562 * 5 4 3 8 8 C 1.46728 * 126.64288 * 179.97438 * 7 5 4 9 9 O 1.21684 * 119.99802 * 352.60364 * 8 7 5 10 10 N 1.34774 * 119.99653 * 172.60553 * 8 7 5 11 11 C 1.46493 * 120.00353 * 3.63708 * 10 8 7 12 12 C 1.46504 * 119.99484 * 183.63985 * 10 8 7 13 13 C 1.53005 * 109.47132 * 89.99834 * 12 10 8 14 14 N 1.46900 * 109.47186 * 179.97438 * 13 12 10 15 15 C 1.46900 * 111.00197 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.46923 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00467 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99673 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00219 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99551 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00112 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00056 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99866 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47410 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47332 * 120.00037 * 23 21 19 26 26 H 1.48497 * 109.47220 * 240.00234 * 23 21 19 27 27 O 1.33668 * 125.42414 * 269.97249 * 3 2 1 28 28 H 1.08997 * 109.47207 * 60.00249 * 1 2 3 29 29 H 1.09000 * 109.46561 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46972 * 300.00270 * 1 2 3 31 31 H 1.08993 * 109.47359 * 240.00109 * 2 1 3 32 32 H 1.08997 * 109.47207 * 119.99751 * 2 1 3 33 33 H 1.09000 * 109.47205 * 89.97896 * 6 5 4 34 34 H 1.09000 * 109.46679 * 209.97480 * 6 5 4 35 35 H 1.08995 * 109.47163 * 329.97438 * 6 5 4 36 36 H 1.08998 * 109.47168 * 83.96480 * 11 10 8 37 37 H 1.08994 * 109.47285 * 203.96711 * 11 10 8 38 38 H 1.09003 * 109.46996 * 323.96902 * 11 10 8 39 39 H 1.08995 * 109.46666 * 209.99950 * 12 10 8 40 40 H 1.08998 * 109.46994 * 329.99813 * 12 10 8 41 41 H 1.08996 * 109.47346 * 300.00188 * 13 12 10 42 42 H 1.09005 * 109.46997 * 59.99755 * 13 12 10 43 43 H 1.00902 * 110.99694 * 56.04813 * 14 13 12 44 44 H 1.08995 * 109.47108 * 300.00314 * 15 14 13 45 45 H 1.09002 * 109.46976 * 60.00122 * 15 14 13 46 46 H 0.97000 * 119.99806 * 359.97438 * 18 16 15 47 47 H 0.97006 * 119.99954 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2852 2.1345 1.0644 5 6 2.7129 3.3433 0.6863 6 6 3.1136 4.4732 1.5995 7 6 2.7202 3.3666 -0.6769 8 6 3.1173 4.4914 -1.5314 9 8 3.3575 5.5766 -1.0361 10 7 3.2161 4.3224 -2.8649 11 6 2.8504 3.0393 -3.4698 12 6 3.6892 5.4221 -3.7094 13 6 5.2112 5.3430 -3.8444 14 7 5.6856 6.4453 -4.6917 15 6 7.1459 6.4010 -4.8446 16 6 7.5944 7.5439 -5.7184 17 8 6.7779 8.3194 -6.1692 18 7 8.9028 7.7044 -5.9991 19 6 9.3110 8.7444 -6.7936 20 1 8.5839 9.4349 -7.1950 21 6 10.6600 8.9101 -7.0825 22 7 11.5446 8.0703 -6.5938 23 14 11.2159 10.3268 -8.1657 24 1 10.0344 11.1228 -8.5849 25 1 12.1517 11.1937 -7.4054 26 1 11.9037 9.7906 -9.3676 27 8 2.2911 2.1511 -1.0892 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 4.1788 4.4025 1.8194 34 1 2.9058 5.4256 1.1118 35 1 2.5459 4.4089 2.5278 36 1 1.7734 3.0092 -3.6348 37 1 3.3672 2.9264 -4.4227 38 1 3.1384 2.2275 -2.8018 39 1 3.2324 5.3448 -4.6960 40 1 3.4136 6.3737 -3.2550 41 1 5.6680 5.4202 -2.8578 42 1 5.4867 4.3913 -4.2989 43 1 5.3868 7.3369 -4.3259 44 1 7.6165 6.4857 -3.8650 45 1 7.4345 5.4565 -5.3058 46 1 9.5558 7.0844 -5.6383 47 1 12.4863 8.1858 -6.7958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493752681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:41 Heat of formation + Delta-G solvation = -73.933999 kcal Electronic energy + Delta-G solvation = -28453.409348 eV Core-core repulsion = 24251.012205 eV Total energy + Delta-G solvation = -4202.397142 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.61679 -40.98361 -40.16038 -37.75252 -36.72464 -36.09148 -35.67596 -35.18609 -33.29299 -32.04555 -31.09585 -29.04640 -28.20460 -27.27317 -26.07478 -25.29238 -23.64666 -22.68336 -22.24969 -21.28382 -20.92210 -19.92460 -18.69213 -18.23089 -17.89161 -17.57391 -17.24514 -16.99674 -16.52070 -16.24048 -15.98810 -15.75221 -15.52292 -15.26269 -14.93037 -14.87635 -14.46238 -14.36370 -14.24737 -14.11217 -13.84129 -13.61149 -13.56033 -13.41742 -13.32697 -13.12221 -12.93053 -12.77544 -12.61780 -12.41382 -12.20909 -12.15989 -12.11290 -12.04109 -11.84028 -11.52536 -11.34028 -10.41669 -10.15749 -10.03119 -9.76110 -9.46190 -8.47863 -5.96878 -0.36455 1.17745 1.22811 1.36467 1.41948 1.56367 1.75065 1.88784 2.02677 2.29101 2.76703 2.93950 3.19144 3.35718 3.53200 3.56456 3.91616 4.02629 4.09113 4.14659 4.20778 4.21054 4.28076 4.36432 4.44016 4.45504 4.53390 4.56902 4.58348 4.60822 4.72997 4.74368 4.82210 4.88711 4.96117 4.99174 5.04992 5.19724 5.27670 5.34072 5.40359 5.79952 6.01102 6.03826 6.26598 6.45407 6.58114 6.75786 7.11050 7.53911 8.08922 8.69763 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.001681 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.702402 B =16657.655867 C =16868.251364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.031 4.031 3 C 0.229 3.771 4 N -0.514 5.514 5 C 0.073 3.927 6 C -0.082 4.082 7 C -0.136 4.136 8 C 0.602 3.398 9 O -0.544 6.544 10 N -0.599 5.599 11 C 0.070 3.930 12 C 0.123 3.877 13 C 0.054 3.946 14 N -0.674 5.674 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.270 1.270 27 O -0.177 6.177 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.022 0.978 42 H 0.088 0.912 43 H 0.345 0.655 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.283 -21.819 13.887 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.068 4.068 3 C 0.024 3.976 4 N -0.244 5.244 5 C -0.051 4.051 6 C -0.139 4.139 7 C -0.190 4.190 8 C 0.390 3.610 9 O -0.424 6.424 10 N -0.330 5.330 11 C -0.071 4.071 12 C 0.001 3.999 13 C -0.076 4.076 14 N -0.307 5.307 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.508 6.508 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.195 1.195 27 O -0.065 6.065 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.040 0.960 42 H 0.107 0.893 43 H 0.163 0.837 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.700 -21.334 13.746 32.750 hybrid contribution 1.272 1.104 -0.046 1.685 sum -19.428 -20.230 13.699 31.214 Atomic orbital electron populations 1.21788 0.91925 1.04593 1.02273 1.20554 0.97538 0.81187 1.07557 1.27689 0.93937 0.97683 0.78330 1.70393 1.19153 1.03705 1.31101 1.22377 0.96545 0.94477 0.91671 1.20421 1.02550 0.93166 0.97745 1.22600 1.14824 0.86752 0.94857 1.16646 0.77425 0.85017 0.81941 1.90849 1.52334 1.25163 1.74088 1.47750 1.63991 1.15987 1.05307 1.22247 1.02005 0.82685 1.00175 1.21412 0.93370 0.89617 0.95521 1.22259 0.95360 0.95464 0.94521 1.60023 1.09995 1.07179 1.53462 1.21525 0.89216 0.97690 0.98209 1.20797 0.82429 0.88589 0.85649 1.90493 1.53412 1.48921 1.57983 1.41931 1.06513 1.27373 1.45146 1.19732 0.92738 1.06942 1.27046 0.90222 1.26060 0.95064 1.01016 0.99134 1.69680 1.02857 1.38002 1.45580 0.84845 0.78050 0.77452 0.77820 1.19763 1.19646 1.19495 1.84657 1.63719 1.21411 1.36665 0.92345 0.88168 0.93058 0.85820 0.86046 0.89505 0.89637 0.89145 0.90867 0.88155 0.90035 0.87176 0.90776 0.95975 0.89345 0.83651 0.92063 0.87340 0.76967 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.90 71.98 0.71 0.04 16 2 C -0.03 -0.17 6.56 29.85 0.20 0.03 16 3 C 0.23 3.53 7.57 88.29 0.67 4.20 16 4 N -0.51 -10.76 11.26 -291.05 -3.28 -14.04 16 5 C 0.07 1.68 7.16 41.84 0.30 1.98 16 6 C -0.08 -1.66 9.96 71.24 0.71 -0.95 16 7 C -0.14 -3.05 6.79 24.05 0.16 -2.89 16 8 C 0.60 15.03 7.64 86.46 0.66 15.69 16 9 O -0.54 -16.74 14.33 -4.30 -0.06 -16.80 16 10 N -0.60 -12.08 2.87 -851.47 -2.45 -14.53 16 11 C 0.07 0.90 9.65 127.77 1.23 2.13 16 12 C 0.12 2.69 5.67 86.38 0.49 3.18 16 13 C 0.05 1.33 6.01 86.31 0.52 1.85 16 14 N -0.67 -21.63 6.12 -517.94 -3.17 -24.80 16 15 C 0.07 2.32 6.17 85.56 0.53 2.85 16 16 C 0.44 21.19 7.82 87.65 0.69 21.88 16 17 O -0.62 -34.90 15.78 -3.08 -0.05 -34.95 16 18 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 19 C -0.34 -19.27 9.68 84.04 0.81 -18.45 16 20 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -50.00 13.05 21.66 0.28 -49.71 16 23 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 27 O -0.18 -3.06 7.51 -7.04 -0.05 -3.11 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.96 6.34 -2.39 -0.02 1.94 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.96 8.03 -2.39 -0.02 0.95 16 38 H 0.08 1.03 5.42 -2.39 -0.01 1.02 16 39 H 0.11 2.07 8.07 -2.39 -0.02 2.05 16 40 H 0.07 1.88 7.37 -2.39 -0.02 1.86 16 41 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.35 11.91 8.43 -89.69 -0.76 11.15 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 45 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 47 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -75.66 397.88 -0.70 -76.36 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.48 Total: 36.44 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 8.14 Total: 31.31 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -10.24 Total: -134.52 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.16 Total: -54.86 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -75.66 -0.70 -76.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493752681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.430 kcal (2) G-P(sol) polarization free energy of solvation -75.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds