Wall clock time and date at job start Tue Mar 31 2020 21:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47489 * 2 1 4 4 N 1.46904 * 109.46850 * 119.99635 * 2 1 3 5 5 C 1.46903 * 111.00121 * 274.20008 * 4 2 1 6 6 C 1.52998 * 109.46780 * 76.97038 * 5 4 2 7 7 C 1.53001 * 109.46949 * 173.34176 * 6 5 4 8 8 N 1.46495 * 109.47277 * 180.02562 * 7 6 5 9 9 C 1.34782 * 120.00037 * 180.02562 * 8 7 6 10 10 O 1.21605 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.47418 * 119.99814 * 180.02562 * 9 8 7 12 12 C 1.36093 * 126.44528 * 179.97438 * 11 9 8 13 13 O 1.34265 * 106.94623 * 180.24121 * 12 11 9 14 14 C 1.34044 * 108.22871 * 359.57888 * 13 12 11 15 15 N 1.29941 * 109.24335 * 0.43419 * 14 13 12 16 16 C 1.46902 * 110.99931 * 150.25100 * 4 2 1 17 17 C 1.50704 * 109.46892 * 286.79794 * 16 4 2 18 18 O 1.21299 * 119.99934 * 1.39108 * 17 16 4 19 19 N 1.34769 * 120.00401 * 181.38382 * 17 16 4 20 20 C 1.37095 * 120.00666 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99553 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00258 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99957 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46926 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46805 * 119.99701 * 24 22 20 27 27 H 1.48488 * 109.47269 * 239.99928 * 24 22 20 28 28 H 1.09001 * 109.47157 * 313.57548 * 1 2 3 29 29 H 1.08996 * 109.46827 * 73.57601 * 1 2 3 30 30 H 1.08996 * 109.47221 * 193.57813 * 1 2 3 31 31 H 1.09003 * 109.47257 * 239.99036 * 2 1 3 32 32 H 1.08998 * 109.47726 * 169.02622 * 3 2 1 33 33 H 1.09005 * 109.46882 * 289.02313 * 3 2 1 34 34 H 1.08999 * 109.47212 * 49.02052 * 3 2 1 35 35 H 1.09002 * 109.47217 * 316.97409 * 5 4 2 36 36 H 1.08998 * 109.46961 * 196.97318 * 5 4 2 37 37 H 1.08999 * 109.46911 * 53.34437 * 6 5 4 38 38 H 1.08997 * 109.47720 * 293.34017 * 6 5 4 39 39 H 1.09004 * 109.47486 * 60.00094 * 7 6 5 40 40 H 1.09009 * 109.47125 * 300.00193 * 7 6 5 41 41 H 0.97002 * 120.00129 * 0.02562 * 8 7 6 42 42 H 1.07991 * 126.53031 * 359.97438 * 12 11 9 43 43 H 1.07995 * 125.38450 * 180.13532 * 14 13 12 44 44 H 1.08992 * 109.47403 * 46.79678 * 16 4 2 45 45 H 1.08999 * 109.46991 * 166.80542 * 16 4 2 46 46 H 0.97007 * 119.99531 * 0.02562 * 19 17 16 47 47 H 0.96994 * 119.99716 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.1004 0.2272 2.3422 6 6 0.6977 0.4661 2.9046 7 6 0.7974 1.2879 4.1913 8 7 -0.5456 1.5162 4.7302 9 6 -0.7045 2.2223 5.8672 10 8 0.2670 2.6696 6.4460 11 6 -2.0559 2.4515 6.4098 12 6 -2.3666 3.1408 7.5413 13 8 -3.7027 3.1023 7.6686 14 6 -4.2028 2.4130 6.6335 15 7 -3.2273 2.0141 5.8733 16 6 3.3177 -1.3316 0.9455 17 6 3.1179 -2.5466 0.0766 18 8 2.0070 -2.8359 -0.3153 19 7 4.1734 -3.3117 -0.2652 20 6 3.9917 -4.4167 -1.0560 21 1 3.0026 -4.6743 -1.4048 22 6 5.0800 -5.2058 -1.4079 23 7 6.2834 -4.8926 -0.9830 24 14 4.8322 -6.7119 -2.4849 25 1 3.3933 -6.8442 -2.8274 26 1 5.6258 -6.5648 -3.7315 27 1 5.2807 -7.9233 -1.7526 28 1 -0.3633 0.7084 0.7445 29 1 -0.3633 0.2906 -0.9857 30 1 -0.3633 -0.9989 0.2413 31 1 1.8934 -0.5140 -0.8899 32 1 3.1124 1.4487 0.1956 33 1 1.8454 1.8966 -0.9716 34 1 1.5259 2.0097 0.7758 35 1 2.5274 1.1756 2.0159 36 1 2.7326 -0.2089 3.1156 37 1 0.2251 -0.4919 3.1211 38 1 0.1001 1.0089 2.1723 39 1 1.2701 2.2460 3.9749 40 1 1.3950 0.7451 4.9238 41 1 -1.3205 1.1591 4.2688 42 1 -1.6708 3.6230 8.2118 43 1 -5.2505 2.2156 6.4613 44 1 3.9767 -0.6268 0.4385 45 1 3.7663 -1.6319 1.8924 46 1 5.0618 -3.0805 0.0485 47 1 7.0431 -5.4432 -1.2290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493858418.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:49 Heat of formation + Delta-G solvation = -66.591119 kcal Electronic energy + Delta-G solvation = -28617.791521 eV Core-core repulsion = 24415.712790 eV Total energy + Delta-G solvation = -4202.078731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.37778 -40.78622 -40.46419 -39.00479 -36.41544 -35.88281 -35.79881 -33.35556 -33.03033 -32.48576 -31.32621 -28.64370 -28.09452 -26.87460 -25.53087 -24.38790 -23.59442 -22.61667 -21.73029 -21.16965 -20.41348 -19.79340 -19.43858 -17.74116 -17.71631 -17.54727 -17.44177 -17.06146 -16.54933 -16.39731 -16.33935 -15.84310 -15.71434 -15.32228 -15.10131 -14.93088 -14.70263 -14.46528 -14.27820 -13.90507 -13.50725 -13.42796 -13.32092 -13.00867 -12.94755 -12.71389 -12.64832 -12.41287 -12.38497 -12.16541 -12.11585 -11.95500 -11.87329 -11.67031 -11.45428 -11.38400 -11.15967 -10.33580 -10.26079 -10.02950 -9.96885 -9.07462 -8.44471 -5.92587 0.10386 1.06756 1.36782 1.41284 1.55498 1.73507 2.09481 2.10937 2.22458 2.29973 2.79711 3.12025 3.22569 3.45332 3.79885 3.89726 3.90380 3.98385 4.16183 4.20805 4.29591 4.36456 4.45325 4.51668 4.54950 4.56182 4.58724 4.65823 4.69589 4.76401 4.82097 4.90113 5.00710 5.06579 5.12357 5.18168 5.25257 5.33936 5.42868 5.49731 5.57307 5.96036 6.18391 6.27450 6.35623 6.58835 6.64416 7.04569 7.16479 7.61109 8.17605 8.73303 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.001761 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.797627 B =15897.897203 C =15964.677777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.080 3.920 3 C -0.172 4.172 4 N -0.527 5.527 5 C 0.048 3.952 6 C -0.119 4.119 7 C 0.126 3.874 8 N -0.704 5.704 9 C 0.597 3.403 10 O -0.572 6.572 11 C -0.108 4.108 12 C 0.029 3.971 13 O -0.199 6.199 14 C 0.199 3.801 15 N -0.500 5.500 16 C 0.057 3.943 17 C 0.443 3.557 18 O -0.612 6.612 19 N -0.579 5.579 20 C -0.328 4.328 21 H 0.077 0.923 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.415 0.585 42 H 0.250 0.750 43 H 0.301 0.699 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.395 0.605 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 19.476 15.232 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.028 4.028 3 C -0.230 4.230 4 N -0.251 5.251 5 C -0.080 4.080 6 C -0.157 4.157 7 C 0.002 3.998 8 N -0.354 5.354 9 C 0.383 3.617 10 O -0.452 6.452 11 C -0.226 4.226 12 C -0.046 4.046 13 O -0.084 6.084 14 C -0.030 4.030 15 N -0.229 5.229 16 C -0.074 4.074 17 C 0.230 3.770 18 O -0.497 6.497 19 N -0.218 5.218 20 C -0.458 4.458 21 H 0.095 0.905 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.252 0.748 42 H 0.266 0.734 43 H 0.316 0.684 44 H 0.084 0.916 45 H 0.124 0.876 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.812 18.758 14.885 29.259 hybrid contribution 0.986 -0.277 -0.444 1.116 sum -15.826 18.482 14.440 28.294 Atomic orbital electron populations 1.21888 0.93823 1.01571 1.01547 1.21609 0.96785 0.92669 0.91750 1.22403 1.01101 0.96410 1.03133 1.61661 1.25334 1.32317 1.05830 1.22247 0.97264 0.96081 0.92371 1.21852 0.97950 1.00390 0.95460 1.21343 0.82968 1.00327 0.95165 1.45789 1.10765 1.53839 1.25054 1.17031 0.86114 0.77923 0.80613 1.90806 1.40657 1.52899 1.60886 1.21705 0.93474 1.08234 0.99185 1.25722 0.82040 0.98560 0.98265 1.84504 1.20431 1.58495 1.44931 1.29212 1.02123 0.90677 0.80996 1.70742 0.98147 1.23378 1.30635 1.21747 0.91842 0.93794 1.00021 1.20863 0.84546 0.86772 0.84799 1.90487 1.25571 1.74308 1.59312 1.41959 1.09194 1.24510 1.46090 1.19663 0.95279 1.03607 1.27219 0.90460 1.26018 0.94242 1.01910 0.99331 1.69681 0.99331 1.40965 1.46421 0.84887 0.78190 0.77474 0.77877 1.19866 1.19649 1.19692 0.90373 0.92629 0.94135 0.93882 0.92667 0.91651 0.90232 0.91430 0.90393 0.91374 0.89668 0.90841 0.91703 0.74819 0.73376 0.68436 0.91560 0.87560 0.77173 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.81 71.98 0.63 -2.94 16 2 C 0.08 2.40 2.24 44.91 0.10 2.50 16 3 C -0.17 -3.78 7.76 71.98 0.56 -3.22 16 4 N -0.53 -16.31 3.95 -875.51 -3.46 -19.77 16 5 C 0.05 1.07 4.50 86.30 0.39 1.45 16 6 C -0.12 -2.30 4.72 30.59 0.14 -2.15 16 7 C 0.13 2.35 5.67 86.38 0.49 2.84 16 8 N -0.70 -13.65 5.55 -466.37 -2.59 -16.24 16 9 C 0.60 13.29 7.81 86.66 0.68 13.97 16 10 O -0.57 -15.80 16.89 -4.05 -0.07 -15.87 16 11 C -0.11 -1.93 6.99 40.41 0.28 -1.65 16 12 C 0.03 0.36 11.95 67.32 0.80 1.16 16 13 O -0.20 -1.93 10.73 0.35 0.00 -1.93 16 14 C 0.20 1.53 13.19 130.52 1.72 3.25 16 15 N -0.50 -7.74 11.06 -305.15 -3.37 -11.12 16 16 C 0.06 1.99 5.37 85.56 0.46 2.44 16 17 C 0.44 21.31 7.29 87.66 0.64 21.95 16 18 O -0.61 -34.01 14.85 -3.09 -0.05 -34.06 16 19 N -0.58 -30.20 5.29 -306.98 -1.62 -31.83 16 20 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 24 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H 0.08 1.66 5.00 -2.39 -0.01 1.65 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.66 6.65 -2.39 -0.02 1.64 16 32 H 0.05 1.20 7.13 -2.39 -0.02 1.18 16 33 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.42 6.17 -2.39 -0.01 1.41 16 35 H 0.07 1.29 5.14 -2.39 -0.01 1.28 16 36 H 0.08 1.65 7.60 -2.39 -0.02 1.63 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.54 4.59 -2.39 -0.01 1.52 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.42 7.22 8.20 -92.71 -0.76 6.46 16 42 H 0.25 1.79 8.06 -2.92 -0.02 1.76 16 43 H 0.30 -1.10 8.06 -2.91 -0.02 -1.12 16 44 H 0.07 2.08 7.51 -2.39 -0.02 2.06 16 45 H 0.11 3.26 7.64 -2.39 -0.02 3.25 16 46 H 0.39 19.59 7.90 -92.70 -0.73 18.86 16 47 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -78.17 387.69 -1.13 -79.30 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.46 Total: 34.89 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 8.18 Total: 21.15 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -10.76 Total: -129.20 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.11 Total: -51.86 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -78.17 -1.13 -79.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493858418.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.710 kcal (2) G-P(sol) polarization free energy of solvation -78.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds