Wall clock time and date at job start Tue Mar 31 2020 21:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46773 * 180.02562 * 9 7 6 11 11 C 1.41386 * 126.80237 * 124.71172 * 10 9 7 12 12 C 1.35442 * 103.98721 * 179.88771 * 11 10 9 13 13 C 1.50705 * 126.77718 * 180.14288 * 12 11 10 14 14 O 1.34039 * 106.44831 * 0.36796 * 12 11 10 15 15 N 1.20927 * 111.56843 * 359.75045 * 14 12 11 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47313 * 60.00132 * 25 23 21 27 27 H 1.48504 * 109.46903 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47583 * 299.99880 * 25 23 21 29 29 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 30 30 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 31 31 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.08001 * 128.00143 * 0.02562 * 11 10 9 40 40 H 1.09001 * 109.46835 * 180.30157 * 13 12 11 41 41 H 1.09003 * 109.46830 * 300.29638 * 13 12 11 42 42 H 1.08995 * 109.46832 * 60.29944 * 13 12 11 43 43 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 44 44 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 45 45 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 46 46 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 6 7.4005 4.4765 0.0567 11 6 8.2044 5.2148 -0.8421 12 6 9.4710 4.8749 -0.5035 13 6 10.7409 5.3757 -1.1419 14 8 9.3719 4.0013 0.5083 15 7 8.2181 3.7931 0.8045 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 3.0625 1.0278 7.3408 25 14 1.5598 2.8433 8.7958 26 1 0.0868 2.6785 8.8868 27 1 2.2006 2.2300 9.9868 28 1 1.8937 4.2893 8.7431 29 1 -0.3633 0.4307 0.9330 30 1 -0.3633 0.5927 -0.8396 31 1 -0.3633 -1.0234 -0.0937 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 7.8828 5.8943 -1.6175 40 1 11.5994 4.9151 -0.6531 41 1 10.7426 5.1154 -2.2004 42 1 10.7991 6.4588 -1.0339 43 1 1.7982 3.1043 1.1910 44 1 1.9988 0.4462 2.4506 45 1 3.3252 1.6286 2.3450 46 1 2.8316 1.0718 4.9357 47 1 3.3839 0.7444 8.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494954435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:23 Heat of formation + Delta-G solvation = -16.359308 kcal Electronic energy + Delta-G solvation = -29115.382924 eV Core-core repulsion = 24915.482407 eV Total energy + Delta-G solvation = -4199.900516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.04746 -40.02636 -38.58139 -37.28264 -34.82547 -34.11245 -33.86769 -33.58535 -31.97277 -31.18097 -30.14544 -28.20023 -27.99657 -26.44383 -24.27877 -23.57582 -23.11747 -21.27849 -20.43900 -19.79103 -19.05964 -17.91416 -17.89274 -17.39488 -17.11075 -16.73985 -16.13794 -15.67106 -15.35553 -14.79818 -14.60269 -14.31537 -14.19874 -13.99820 -13.91125 -13.66360 -13.57295 -13.47409 -13.31221 -13.18601 -12.83233 -12.63047 -12.40786 -12.15084 -11.91065 -11.64093 -11.45867 -11.28565 -11.22977 -11.00873 -10.87169 -10.58664 -10.43526 -10.38307 -10.20210 -9.90127 -9.48908 -9.46478 -9.21518 -8.49742 -8.09748 -7.95180 -6.40043 -3.81328 1.34948 2.03025 2.51694 2.94270 3.04772 3.20646 3.26578 3.30591 3.91267 3.91856 4.08634 4.21210 4.32356 4.60076 4.68157 4.76961 4.86320 4.87935 4.94438 5.02883 5.11078 5.16541 5.19886 5.24511 5.27246 5.36115 5.41235 5.51710 5.59476 5.61508 5.76767 5.80469 5.84205 5.91743 5.99496 6.08179 6.22044 6.27115 6.30906 6.54336 7.12546 7.28676 7.54199 7.55924 8.06746 8.08201 8.20495 8.61999 9.18660 9.55487 10.06473 10.77531 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.002916 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.150124 B = 9599.216924 C =12309.248908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.081 3.919 6 N -0.729 5.729 7 C 0.517 3.483 8 O -0.525 6.525 9 C -0.064 4.064 10 C 0.026 3.974 11 C -0.230 4.230 12 C -0.040 4.040 13 C -0.073 4.073 14 O 0.106 5.894 15 N -0.333 5.333 16 N -0.652 5.652 17 C 0.043 3.957 18 C 0.441 3.559 19 O -0.585 6.585 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.900 5.900 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.170 0.830 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.344 0.656 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 6.097 -20.906 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.107 0.893 5 C -0.045 4.045 6 N -0.382 5.382 7 C 0.302 3.698 8 O -0.400 6.400 9 C -0.105 4.105 10 C -0.133 4.133 11 C -0.251 4.251 12 C -0.103 4.103 13 C -0.131 4.131 14 O 0.036 5.964 15 N -0.033 5.033 16 N -0.284 5.284 17 C -0.089 4.089 18 C 0.226 3.774 19 O -0.470 6.470 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.541 5.541 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.188 0.812 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.164 0.836 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.930 4.697 -19.791 22.215 hybrid contribution 0.593 1.117 0.230 1.285 sum 9.523 5.814 -19.561 22.520 Atomic orbital electron populations 1.21615 0.94572 1.00580 1.03091 1.21503 0.97370 0.94307 1.02005 1.21983 0.90259 0.97247 0.93906 0.89320 1.22197 0.96504 0.83046 1.02706 1.45903 1.07045 1.09919 1.75344 1.20277 0.82248 0.90826 0.76497 1.90756 1.55378 1.46091 1.47767 1.19997 0.88269 0.95959 1.06225 1.22744 0.96880 0.97677 0.96022 1.22304 0.91518 1.06753 1.04575 1.24489 0.98369 0.94763 0.92687 1.20318 0.90944 1.01612 1.00180 1.84890 1.22875 1.47754 1.40895 1.73943 0.89107 1.18875 1.21361 1.60223 1.60849 1.07368 0.99927 1.21780 0.96610 1.00034 0.90487 1.19787 0.86189 0.87104 0.84314 1.90514 1.36835 1.33073 1.86528 1.41865 1.39712 1.33657 1.04647 1.19636 1.23555 1.16701 0.83132 0.87990 1.25270 0.96542 0.96711 0.99401 1.69606 1.30603 1.27892 1.26046 0.85924 0.78943 0.79217 0.80159 1.19875 1.20965 1.19927 0.91003 0.93205 0.93537 0.91833 0.91456 0.90826 0.91221 0.76566 0.86568 0.86558 0.81213 0.89885 0.89316 0.89245 0.83611 0.89333 0.93512 0.77492 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.71 37.16 0.36 -1.25 16 2 C -0.11 -1.24 5.29 -26.73 -0.14 -1.38 16 3 C 0.08 0.85 2.73 -67.71 -0.18 0.67 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.08 0.95 4.47 -4.04 -0.02 0.93 16 6 N -0.73 -8.16 5.31 -60.29 -0.32 -8.48 16 7 C 0.52 6.93 7.82 -10.98 -0.09 6.84 16 8 O -0.52 -9.38 15.59 5.56 0.09 -9.29 16 9 C -0.06 -0.66 6.30 -29.03 -0.18 -0.84 16 10 C 0.03 0.33 6.10 -82.10 -0.50 -0.17 16 11 C -0.23 -2.19 11.05 -39.38 -0.44 -2.62 16 12 C -0.04 -0.37 7.49 -35.30 -0.26 -0.64 16 13 C -0.07 -0.34 10.45 36.01 0.38 0.03 16 14 O 0.11 1.41 11.20 17.18 0.19 1.61 16 15 N -0.33 -5.20 11.46 33.42 0.38 -4.81 16 16 N -0.65 -9.44 5.38 -107.98 -0.58 -10.02 16 17 C 0.04 0.75 5.32 -4.97 -0.03 0.72 16 18 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 19 O -0.58 -15.52 15.83 5.54 0.09 -15.43 16 20 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 25 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.07 1.01 7.85 -51.93 -0.41 0.61 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 34 H 0.07 1.03 6.69 -51.93 -0.35 0.68 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.40 3.62 7.23 -40.82 -0.30 3.32 16 37 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.34 4.92 7.24 -39.29 -0.28 4.64 16 44 H 0.09 1.47 6.30 -51.93 -0.33 1.14 16 45 H 0.05 0.80 6.41 -51.93 -0.33 0.47 16 46 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 47 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -36.71 394.62 -6.80 -43.51 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -6.81 Total: 15.06 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.43 Total: 4.44 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.15 Total: -62.15 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.37 Total: -23.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.71 -6.80 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494954435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.149 kcal (2) G-P(sol) polarization free energy of solvation -36.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds