Wall clock time and date at job start Tue Mar 31 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46773 * 180.02562 * 9 7 6 11 11 C 1.41386 * 126.80237 * 124.71172 * 10 9 7 12 12 C 1.35442 * 103.98721 * 179.88771 * 11 10 9 13 13 C 1.50705 * 126.77718 * 180.14288 * 12 11 10 14 14 O 1.34039 * 106.44831 * 0.36796 * 12 11 10 15 15 N 1.20927 * 111.56843 * 359.75045 * 14 12 11 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00163 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47313 * 60.00132 * 25 23 21 27 27 H 1.48504 * 109.46903 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47583 * 299.99880 * 25 23 21 29 29 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 30 30 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 31 31 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.08001 * 128.00143 * 0.02562 * 11 10 9 40 40 H 1.09001 * 109.46835 * 180.30157 * 13 12 11 41 41 H 1.09003 * 109.46830 * 300.29638 * 13 12 11 42 42 H 1.08995 * 109.46832 * 60.29944 * 13 12 11 43 43 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 44 44 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 45 45 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 46 46 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99935 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 6 7.4005 4.4765 0.0567 11 6 8.2044 5.2148 -0.8421 12 6 9.4710 4.8749 -0.5035 13 6 10.7409 5.3757 -1.1419 14 8 9.3719 4.0013 0.5083 15 7 8.2181 3.7931 0.8045 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 3.0625 1.0278 7.3408 25 14 1.5598 2.8433 8.7958 26 1 0.0868 2.6785 8.8868 27 1 2.2006 2.2300 9.9868 28 1 1.8937 4.2893 8.7431 29 1 -0.3633 0.4307 0.9330 30 1 -0.3633 0.5927 -0.8396 31 1 -0.3633 -1.0234 -0.0937 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 7.8828 5.8943 -1.6175 40 1 11.5994 4.9151 -0.6531 41 1 10.7426 5.1154 -2.2004 42 1 10.7991 6.4588 -1.0339 43 1 1.7982 3.1043 1.1910 44 1 1.9988 0.4462 2.4506 45 1 3.3252 1.6286 2.3450 46 1 2.8316 1.0718 4.9357 47 1 3.3839 0.7444 8.2110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494954435.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:22 Heat of formation + Delta-G solvation = -45.384745 kcal Electronic energy + Delta-G solvation = -29116.641561 eV Core-core repulsion = 24915.482407 eV Total energy + Delta-G solvation = -4201.159154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.91631 -41.11013 -40.19859 -38.66899 -35.99002 -35.66643 -35.08740 -34.26334 -33.37029 -33.01813 -31.08086 -29.31940 -28.59400 -27.90730 -26.08153 -24.51805 -23.97147 -22.22615 -21.72607 -20.89159 -20.45206 -19.87680 -18.82829 -18.39796 -18.23046 -17.90112 -17.14512 -17.05151 -16.74653 -16.32319 -15.91482 -15.73114 -15.48476 -15.15064 -14.97746 -14.70864 -14.61695 -14.33269 -14.06328 -13.94694 -13.92886 -13.77132 -13.50361 -13.41487 -13.15626 -13.10416 -12.88614 -12.65936 -12.44991 -12.29760 -12.14783 -12.04271 -11.81040 -11.55748 -11.50070 -11.30496 -10.89948 -10.36914 -10.22641 -10.22118 -10.04171 -9.39169 -8.48286 -5.97762 0.58479 1.21391 1.38009 1.39359 1.50463 1.51004 2.02486 2.09564 2.27131 2.32217 2.90479 3.13356 3.18660 3.48542 3.52012 3.69546 3.80601 4.01918 4.12884 4.17661 4.20593 4.28358 4.30123 4.35966 4.42890 4.50431 4.54709 4.64126 4.66446 4.68923 4.75886 4.90972 4.93569 4.97245 5.03830 5.18512 5.28782 5.29742 5.37273 5.38294 5.57319 5.84460 6.04774 6.34945 6.40661 6.56473 7.09800 7.11423 7.38776 7.53502 8.07570 8.69095 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008161 B = 0.002916 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3430.150124 B = 9599.216924 C =12309.248908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C 0.088 3.912 4 H 0.117 0.883 5 C 0.086 3.914 6 N -0.717 5.717 7 C 0.512 3.488 8 O -0.576 6.576 9 C -0.061 4.061 10 C 0.010 3.990 11 C -0.231 4.231 12 C -0.040 4.040 13 C -0.071 4.071 14 O 0.080 5.920 15 N -0.392 5.392 16 N -0.657 5.657 17 C 0.064 3.936 18 C 0.440 3.560 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.083 0.917 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.162 0.838 38 H 0.121 0.879 39 H 0.207 0.793 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.346 0.654 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.393 0.607 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.490 7.409 -22.848 25.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.022 4.022 4 H 0.135 0.865 5 C -0.040 4.040 6 N -0.371 5.371 7 C 0.298 3.702 8 O -0.455 6.455 9 C -0.101 4.101 10 C -0.149 4.149 11 C -0.252 4.252 12 C -0.103 4.103 13 C -0.128 4.128 14 O 0.014 5.986 15 N -0.096 5.096 16 N -0.289 5.289 17 C -0.068 4.068 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.101 0.899 23 C -0.216 4.216 24 N -0.565 5.565 25 Si 0.818 3.182 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.179 0.821 38 H 0.139 0.861 39 H 0.224 0.776 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.166 0.834 44 H 0.117 0.883 45 H 0.069 0.931 46 H 0.226 0.774 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.838 6.023 -21.758 24.244 hybrid contribution 0.618 0.721 0.717 1.190 sum 9.456 6.743 -21.041 24.034 Atomic orbital electron populations 1.21562 0.94782 1.01196 1.01912 1.21544 0.97060 0.94124 1.02560 1.22050 0.89719 0.97515 0.92901 0.86520 1.22119 0.96638 0.83077 1.02164 1.45838 1.06788 1.10193 1.74260 1.20842 0.82319 0.91609 0.75401 1.90735 1.56661 1.47811 1.50273 1.20168 0.87244 0.94469 1.08238 1.23345 0.97927 0.97463 0.96153 1.22762 0.90833 1.06868 1.04733 1.25441 1.00470 0.93135 0.91268 1.20571 0.88714 1.02803 1.00733 1.84811 1.22311 1.49057 1.42436 1.73930 0.90250 1.21498 1.23951 1.60211 1.60886 1.07676 1.00160 1.21510 0.96592 0.99888 0.88807 1.20796 0.84852 0.86253 0.85329 1.90482 1.38048 1.34440 1.87254 1.41976 1.40240 1.33985 1.05097 1.19654 1.24438 1.17348 0.84743 0.89929 1.26104 0.96394 0.97121 1.01964 1.69686 1.31157 1.28660 1.26994 0.84967 0.78502 0.78275 0.76485 1.19439 1.19713 1.19494 0.94127 0.91842 0.92601 0.89368 0.92882 0.93326 0.90372 0.75086 0.82074 0.86078 0.77568 0.89485 0.87369 0.86963 0.83376 0.88331 0.93054 0.77425 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.71 71.98 0.70 -2.19 16 2 C -0.11 -2.27 5.29 30.59 0.16 -2.11 16 3 C 0.09 1.76 2.73 44.91 0.12 1.89 16 4 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.09 1.91 4.47 86.38 0.39 2.29 16 6 N -0.72 -15.12 5.31 -463.05 -2.46 -17.58 16 7 C 0.51 13.48 7.82 87.66 0.69 14.16 16 8 O -0.58 -21.04 15.59 -3.04 -0.05 -21.08 16 9 C -0.06 -1.19 6.30 29.10 0.18 -1.01 16 10 C 0.01 0.25 6.10 43.58 0.27 0.52 16 11 C -0.23 -3.99 11.05 22.40 0.25 -3.74 16 12 C -0.04 -0.72 7.49 25.04 0.19 -0.53 16 13 C -0.07 -0.50 10.45 71.24 0.74 0.24 16 14 O 0.08 2.23 11.20 71.64 0.80 3.03 16 15 N -0.39 -12.75 11.46 -49.55 -0.57 -13.32 16 16 N -0.66 -18.30 5.38 -495.54 -2.66 -20.96 16 17 C 0.06 2.23 5.32 85.56 0.46 2.69 16 18 C 0.44 20.99 7.82 87.66 0.69 21.68 16 19 O -0.62 -33.23 15.83 -3.08 -0.05 -33.28 16 20 N -0.58 -30.43 5.29 -306.97 -1.62 -32.05 16 21 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 22 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 24 N -0.92 -51.85 13.05 21.66 0.28 -51.57 16 25 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.21 6.36 -2.39 -0.02 1.20 16 34 H 0.05 1.35 6.69 -2.38 -0.02 1.34 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.41 6.62 7.23 -92.71 -0.67 5.95 16 37 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 42 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.35 9.43 7.24 -89.69 -0.65 8.78 16 44 H 0.10 3.26 6.30 -2.39 -0.02 3.25 16 45 H 0.05 1.76 6.41 -2.39 -0.02 1.75 16 46 H 0.39 20.28 7.90 -92.71 -0.73 19.55 16 47 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -83.90 394.62 0.79 -83.11 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: -1.02 Total: 42.79 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 6.11 Total: 15.08 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -7.03 Total: -135.49 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: 0.71 Total: -51.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -83.90 0.79 -83.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494954435.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.729 kcal (2) G-P(sol) polarization free energy of solvation -83.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds