Wall clock time and date at job start Tue Mar 31 2020 20:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47090 * 2 1 4 4 N 1.29945 * 126.29297 * 270.02804 * 3 2 1 5 5 O 1.21310 * 110.24880 * 179.68651 * 4 3 2 6 6 C 1.33641 * 109.81347 * 0.46465 * 5 4 3 7 7 C 1.50698 * 126.54869 * 179.79744 * 6 5 4 8 8 O 1.42896 * 109.47339 * 269.69238 * 7 6 5 9 9 C 1.42901 * 113.99761 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46846 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00132 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99787 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64809 * 4.96904 * 12 10 9 14 14 C 1.54913 * 104.83183 * 204.09004 * 13 12 10 15 15 C 1.55161 * 101.58168 * 322.99277 * 14 13 12 16 16 C 1.47021 * 125.64965 * 184.92280 * 12 10 9 17 17 H 1.09009 * 109.88076 * 59.55983 * 16 12 10 18 18 C 1.52997 * 109.88384 * 298.55545 * 16 12 10 19 19 N 1.46494 * 109.47165 * 174.71903 * 18 16 12 20 20 C 1.36942 * 120.00055 * 184.98023 * 19 18 16 21 21 H 1.07997 * 120.00008 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00065 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47022 * 90.00297 * 24 22 20 26 26 H 1.48499 * 109.47381 * 210.00363 * 24 22 20 27 27 H 1.48504 * 109.47139 * 330.00214 * 24 22 20 28 28 N 1.31130 * 106.89482 * 359.54287 * 6 5 4 29 29 H 1.08999 * 109.47256 * 59.99179 * 1 2 3 30 30 H 1.08996 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46465 * 299.99815 * 1 2 3 32 32 H 1.09002 * 109.46674 * 240.00926 * 2 1 3 33 33 H 1.08994 * 109.47299 * 120.00319 * 2 1 3 34 34 H 1.09008 * 109.46644 * 149.69421 * 7 6 5 35 35 H 1.08994 * 109.46903 * 29.69990 * 7 6 5 36 36 H 1.09007 * 109.47086 * 60.00642 * 9 8 7 37 37 H 1.08998 * 109.47460 * 300.00355 * 9 8 7 38 38 H 1.09006 * 110.36763 * 322.92573 * 13 12 10 39 39 H 1.09001 * 110.37044 * 85.14598 * 13 12 10 40 40 H 1.08999 * 111.00318 * 81.06252 * 14 13 12 41 41 H 1.08994 * 111.00491 * 204.87710 * 14 13 12 42 42 H 1.09005 * 110.71762 * 277.13763 * 15 14 13 43 43 H 1.08998 * 110.71941 * 153.86167 * 15 14 13 44 44 H 1.09007 * 109.46588 * 294.71133 * 18 16 12 45 45 H 1.09000 * 109.47600 * 54.71445 * 18 16 12 46 46 H 0.96999 * 120.00675 * 4.97514 * 19 18 16 47 47 H 0.96999 * 120.00337 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1461 -1.0474 5 8 2.6712 3.2473 -0.7121 6 6 2.7062 3.3281 0.6214 7 6 3.1286 4.5227 1.4373 8 8 4.5323 4.4515 1.6948 9 6 5.0377 5.5429 2.4664 10 6 6.5194 5.3657 2.6769 11 8 7.0868 4.4001 2.2115 12 7 7.2142 6.2807 3.3815 13 6 6.6386 7.4410 4.0857 14 6 7.7994 8.4624 4.1817 15 6 9.0158 7.5298 4.4229 16 6 8.6715 6.2866 3.5759 17 1 9.1741 6.3451 2.6104 18 6 9.1035 5.0162 4.3109 19 7 10.5657 4.9703 4.3886 20 6 11.1892 3.8706 4.9153 21 1 10.6030 3.0374 5.2737 22 6 12.5747 3.8269 4.9884 23 7 13.2891 4.8425 4.5520 24 14 13.4251 2.3272 5.7074 25 1 13.6993 1.3475 4.6256 26 1 14.7048 2.7388 6.3384 27 1 12.5474 1.7030 6.7298 28 7 2.2977 2.1712 1.0842 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.5855 4.5274 2.3824 35 1 2.9061 5.4362 0.8859 36 1 4.5343 5.5684 3.4330 37 1 4.8548 6.4779 1.9368 38 1 5.8111 7.8600 3.5131 39 1 6.3022 7.1519 5.0813 40 1 7.9106 9.0162 3.2495 41 1 7.6540 9.1412 5.0220 42 1 9.0972 7.2673 5.4778 43 1 9.9351 7.9956 4.0682 44 1 8.6861 5.0194 5.3179 45 1 8.7407 4.1422 3.7700 46 1 11.0923 5.7187 4.0670 47 1 14.2573 4.8118 4.6027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499941317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:01 Heat of formation + Delta-G solvation = 11.034301 kcal Electronic energy + Delta-G solvation = -28670.866526 eV Core-core repulsion = 24472.153886 eV Total energy + Delta-G solvation = -4198.712640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.91965 -40.20126 -38.53699 -37.09390 -36.68318 -34.50089 -34.20493 -32.13090 -31.82299 -31.30691 -29.36738 -28.56575 -26.93135 -25.46828 -25.05948 -23.54024 -23.11613 -22.04658 -21.53252 -20.77959 -19.07785 -18.57452 -17.94314 -17.42328 -16.97586 -16.84419 -16.61583 -16.09604 -15.79794 -15.17716 -14.74669 -14.46668 -14.42046 -14.26228 -13.72264 -13.44932 -13.36053 -13.24686 -13.09803 -12.74110 -12.72376 -12.50777 -12.36675 -12.17589 -12.15253 -11.74224 -11.67972 -11.55262 -11.31919 -11.22351 -10.88528 -10.80655 -10.58478 -10.40423 -10.34449 -10.30488 -10.00955 -9.74579 -9.55815 -8.79239 -8.49898 -6.85118 -5.70455 -2.98306 0.67373 1.79078 2.25671 2.66468 2.73054 3.19383 3.49290 3.54245 3.55711 3.61777 3.77551 4.29257 4.45922 4.50568 4.53686 4.67425 4.68104 4.72168 4.72891 4.77315 4.82744 4.92684 4.97233 4.99271 5.32415 5.35100 5.36377 5.40221 5.48869 5.53509 5.62659 5.63796 5.72544 5.77290 5.88452 6.00967 6.05976 6.15808 6.34301 6.41693 6.57409 6.85186 7.04413 7.58660 7.78168 7.81626 8.26334 8.48802 9.59717 10.16060 10.51725 11.52657 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.002222 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.823110 B =12598.282499 C =14640.492620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.034 4.034 3 C 0.171 3.829 4 N -0.378 5.378 5 O 0.089 5.911 6 C 0.185 3.815 7 C 0.157 3.843 8 O -0.354 6.354 9 C 0.053 3.947 10 C 0.524 3.476 11 O -0.502 6.502 12 N -0.612 5.612 13 C 0.097 3.903 14 C -0.134 4.134 15 C -0.122 4.122 16 C 0.133 3.867 17 H 0.078 0.922 18 C 0.144 3.856 19 N -0.728 5.728 20 C -0.232 4.232 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 N -0.458 5.458 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.015 0.985 45 H 0.041 0.959 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.509 6.064 -5.589 29.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.102 4.102 4 N -0.084 5.084 5 O 0.028 5.972 6 C -0.036 4.036 7 C 0.078 3.922 8 O -0.271 6.271 9 C -0.027 4.027 10 C 0.310 3.690 11 O -0.375 6.375 12 N -0.350 5.350 13 C -0.026 4.026 14 C -0.172 4.172 15 C -0.160 4.160 16 C 0.030 3.970 17 H 0.096 0.904 18 C 0.015 3.985 19 N -0.373 5.373 20 C -0.364 4.364 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.585 5.585 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 N -0.194 5.194 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.032 0.968 45 H 0.059 0.941 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -28.302 4.551 -6.399 29.371 hybrid contribution 0.681 -0.181 0.430 0.826 sum -27.621 4.370 -5.969 28.595 Atomic orbital electron populations 1.21736 0.93192 1.02937 1.02594 1.19975 0.96805 0.85479 1.05066 1.25936 1.00247 1.00691 0.83277 1.74652 1.17242 0.92586 1.23882 1.85307 1.60353 1.26981 1.24529 1.28122 0.96899 0.96419 0.82201 1.20569 0.84208 0.90028 0.97362 1.88088 1.19916 1.45595 1.73519 1.22276 0.93376 0.90241 0.96821 1.19633 0.87833 0.82481 0.79047 1.90820 1.70298 1.28335 1.48086 1.48441 1.08454 1.26493 1.51582 1.22383 0.96855 0.86296 0.97079 1.22791 0.94757 0.97040 1.02605 1.22689 0.98019 0.93956 1.01306 1.21859 0.78497 0.96930 0.99696 0.90443 1.20994 0.86713 0.94661 0.96083 1.42199 0.99274 1.20655 1.75150 1.19223 0.89568 0.95528 1.32054 0.91260 1.24719 0.96174 0.98031 1.02220 1.69652 1.05133 1.30684 1.52991 0.86170 0.78950 0.82359 0.78626 1.21733 1.21811 1.20807 1.71892 1.16696 1.01308 1.29480 0.92360 0.90913 0.91962 0.88889 0.88309 0.87994 0.88862 0.89603 0.89595 0.90929 0.91069 0.90705 0.89892 0.89837 0.89643 0.96765 0.94094 0.78362 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.46 16 3 C 0.17 1.97 7.47 -156.37 -1.17 0.80 16 4 N -0.38 -4.73 12.16 30.90 0.38 -4.36 16 5 O 0.09 1.05 11.31 18.10 0.20 1.25 16 6 C 0.18 1.99 8.14 -13.05 -0.11 1.89 16 7 C 0.16 1.15 6.56 36.00 0.24 1.38 16 8 O -0.35 -4.20 9.86 -55.14 -0.54 -4.74 16 9 C 0.05 0.49 5.35 36.01 0.19 0.68 16 10 C 0.52 7.92 7.74 -10.98 -0.09 7.84 16 11 O -0.50 -10.58 15.28 -14.35 -0.22 -10.80 16 12 N -0.61 -8.41 3.07 -163.01 -0.50 -8.91 16 13 C 0.10 0.85 6.74 -2.53 -0.02 0.83 16 14 C -0.13 -1.22 7.09 -24.58 -0.17 -1.39 16 15 C -0.12 -1.67 6.11 -24.90 -0.15 -1.82 16 16 C 0.13 2.26 2.97 -66.96 -0.20 2.06 16 17 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 18 C 0.14 3.17 5.66 -4.05 -0.02 3.15 16 19 N -0.73 -19.25 5.46 -59.91 -0.33 -19.58 16 20 C -0.23 -6.84 9.99 -15.06 -0.15 -6.99 16 21 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.94 -28.84 13.06 55.49 0.72 -28.12 16 24 Si 0.91 23.29 29.55 -169.99 -5.02 18.26 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 N -0.46 -5.60 11.55 -9.86 -0.11 -5.71 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.49 7.95 -51.93 -0.41 0.08 16 38 H 0.07 0.40 7.47 -51.93 -0.39 0.01 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.24 7.77 -51.93 -0.40 0.83 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.01 0.32 8.02 -51.93 -0.42 -0.10 16 45 H 0.04 1.03 6.54 -51.93 -0.34 0.69 16 46 H 0.38 10.33 7.47 -40.82 -0.30 10.03 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -39.10 395.61 -8.33 -47.43 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.31 Total: 2.42 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.56 Total: 6.89 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: 0.16 Total: -66.67 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.56 Total: -14.29 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.10 -8.33 -47.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499941317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.463 kcal (2) G-P(sol) polarization free energy of solvation -39.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds