Wall clock time and date at job start Tue Mar 31 2020 20:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47090 * 2 1 4 4 N 1.29945 * 126.29297 * 270.02804 * 3 2 1 5 5 O 1.21310 * 110.24880 * 179.68651 * 4 3 2 6 6 C 1.33641 * 109.81347 * 0.46465 * 5 4 3 7 7 C 1.50698 * 126.54869 * 179.79744 * 6 5 4 8 8 O 1.42896 * 109.47339 * 269.69238 * 7 6 5 9 9 C 1.42901 * 113.99761 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46846 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00132 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99787 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64809 * 4.96904 * 12 10 9 14 14 C 1.54913 * 104.83183 * 204.09004 * 13 12 10 15 15 C 1.55161 * 101.58168 * 322.99277 * 14 13 12 16 16 C 1.47021 * 125.64965 * 184.92280 * 12 10 9 17 17 H 1.09009 * 109.88076 * 59.55983 * 16 12 10 18 18 C 1.52997 * 109.88384 * 298.55545 * 16 12 10 19 19 N 1.46494 * 109.47165 * 174.71903 * 18 16 12 20 20 C 1.36942 * 120.00055 * 184.98023 * 19 18 16 21 21 H 1.07997 * 120.00008 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00065 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00113 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47022 * 90.00297 * 24 22 20 26 26 H 1.48499 * 109.47381 * 210.00363 * 24 22 20 27 27 H 1.48504 * 109.47139 * 330.00214 * 24 22 20 28 28 N 1.31130 * 106.89482 * 359.54287 * 6 5 4 29 29 H 1.08999 * 109.47256 * 59.99179 * 1 2 3 30 30 H 1.08996 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46465 * 299.99815 * 1 2 3 32 32 H 1.09002 * 109.46674 * 240.00926 * 2 1 3 33 33 H 1.08994 * 109.47299 * 120.00319 * 2 1 3 34 34 H 1.09008 * 109.46644 * 149.69421 * 7 6 5 35 35 H 1.08994 * 109.46903 * 29.69990 * 7 6 5 36 36 H 1.09007 * 109.47086 * 60.00642 * 9 8 7 37 37 H 1.08998 * 109.47460 * 300.00355 * 9 8 7 38 38 H 1.09006 * 110.36763 * 322.92573 * 13 12 10 39 39 H 1.09001 * 110.37044 * 85.14598 * 13 12 10 40 40 H 1.08999 * 111.00318 * 81.06252 * 14 13 12 41 41 H 1.08994 * 111.00491 * 204.87710 * 14 13 12 42 42 H 1.09005 * 110.71762 * 277.13763 * 15 14 13 43 43 H 1.08998 * 110.71941 * 153.86167 * 15 14 13 44 44 H 1.09007 * 109.46588 * 294.71133 * 18 16 12 45 45 H 1.09000 * 109.47600 * 54.71445 * 18 16 12 46 46 H 0.96999 * 120.00675 * 4.97514 * 19 18 16 47 47 H 0.96999 * 120.00337 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1461 -1.0474 5 8 2.6712 3.2473 -0.7121 6 6 2.7062 3.3281 0.6214 7 6 3.1286 4.5227 1.4373 8 8 4.5323 4.4515 1.6948 9 6 5.0377 5.5429 2.4664 10 6 6.5194 5.3657 2.6769 11 8 7.0868 4.4001 2.2115 12 7 7.2142 6.2807 3.3815 13 6 6.6386 7.4410 4.0857 14 6 7.7994 8.4624 4.1817 15 6 9.0158 7.5298 4.4229 16 6 8.6715 6.2866 3.5759 17 1 9.1741 6.3451 2.6104 18 6 9.1035 5.0162 4.3109 19 7 10.5657 4.9703 4.3886 20 6 11.1892 3.8706 4.9153 21 1 10.6030 3.0374 5.2737 22 6 12.5747 3.8269 4.9884 23 7 13.2891 4.8425 4.5520 24 14 13.4251 2.3272 5.7074 25 1 13.6993 1.3475 4.6256 26 1 14.7048 2.7388 6.3384 27 1 12.5474 1.7030 6.7298 28 7 2.2977 2.1712 1.0842 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.5855 4.5274 2.3824 35 1 2.9061 5.4362 0.8859 36 1 4.5343 5.5684 3.4330 37 1 4.8548 6.4779 1.9368 38 1 5.8111 7.8600 3.5131 39 1 6.3022 7.1519 5.0813 40 1 7.9106 9.0162 3.2495 41 1 7.6540 9.1412 5.0220 42 1 9.0972 7.2673 5.4778 43 1 9.9351 7.9956 4.0682 44 1 8.6861 5.0194 5.3179 45 1 8.7407 4.1422 3.7700 46 1 11.0923 5.7187 4.0670 47 1 14.2573 4.8118 4.6027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499941317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:00 Heat of formation + Delta-G solvation = -19.535925 kcal Electronic energy + Delta-G solvation = -28672.192151 eV Core-core repulsion = 24472.153886 eV Total energy + Delta-G solvation = -4200.038265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.75783 -41.29643 -39.37084 -38.23319 -37.47643 -36.44403 -34.94891 -33.60064 -32.80092 -32.60483 -30.61440 -29.62372 -27.70882 -26.73955 -26.16145 -24.73535 -24.28214 -23.43219 -22.24241 -21.87424 -20.32648 -19.41462 -19.20032 -18.69526 -18.21830 -17.81160 -17.39047 -17.05467 -16.75538 -16.39206 -16.00050 -15.67563 -15.40454 -15.26545 -15.06348 -14.89070 -14.84002 -14.09994 -14.04770 -13.89251 -13.75392 -13.63200 -13.21314 -13.13379 -12.97133 -12.91221 -12.77340 -12.71730 -12.49821 -12.37413 -12.21217 -12.04165 -12.02299 -11.92409 -11.74920 -11.55375 -11.19243 -11.04479 -10.89854 -10.76472 -9.67838 -9.06765 -8.00628 -5.30221 -0.13171 0.97270 1.41956 1.45464 1.51337 1.53952 1.58420 1.82360 2.46833 2.52649 2.88247 3.05035 3.31594 3.47549 3.68668 3.75641 3.87503 3.94839 4.08024 4.12118 4.13737 4.18581 4.20293 4.25906 4.33298 4.35979 4.38952 4.40443 4.56490 4.68783 4.77554 4.83399 4.85917 4.89477 4.97625 4.97689 5.06712 5.15717 5.19976 5.20462 5.36289 5.42479 5.45531 5.82785 6.21431 6.56359 6.99352 7.17603 7.27769 7.99401 8.27247 9.22458 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.002222 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.823110 B =12598.282499 C =14640.492620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C 0.164 3.836 4 N -0.403 5.403 5 O 0.078 5.922 6 C 0.185 3.815 7 C 0.155 3.845 8 O -0.402 6.402 9 C 0.063 3.937 10 C 0.509 3.491 11 O -0.582 6.582 12 N -0.610 5.610 13 C 0.091 3.909 14 C -0.119 4.119 15 C -0.120 4.120 16 C 0.138 3.862 17 H 0.048 0.952 18 C 0.150 3.850 19 N -0.736 5.736 20 C -0.251 4.251 21 H 0.064 0.936 22 C -0.071 4.071 23 N -0.964 5.964 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.271 1.271 28 N -0.486 5.486 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.017 0.983 45 H 0.004 0.996 46 H 0.377 0.623 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.132 7.921 -4.498 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.109 4.109 4 N -0.111 5.111 5 O 0.020 5.980 6 C -0.036 4.036 7 C 0.078 3.922 8 O -0.320 6.320 9 C -0.015 4.015 10 C 0.298 3.702 11 O -0.460 6.460 12 N -0.345 5.345 13 C -0.029 4.029 14 C -0.157 4.157 15 C -0.158 4.158 16 C 0.033 3.967 17 H 0.066 0.934 18 C 0.022 3.978 19 N -0.380 5.380 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.264 4.264 23 N -0.614 5.614 24 Si 0.804 3.196 25 H -0.217 1.217 26 H -0.211 1.211 27 H -0.196 1.196 28 N -0.221 5.221 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.035 0.965 45 H 0.022 0.978 46 H 0.210 0.790 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -30.983 6.475 -5.277 32.089 hybrid contribution 1.490 -0.765 0.097 1.678 sum -29.493 5.710 -5.180 30.484 Atomic orbital electron populations 1.21696 0.91670 1.04207 1.02101 1.20190 0.98054 0.83796 1.05630 1.26577 0.99490 1.01803 0.82991 1.74628 1.18593 0.93172 1.24729 1.85263 1.60619 1.26838 1.25251 1.28989 0.95512 0.97102 0.82003 1.21080 0.82276 0.90015 0.98843 1.88009 1.22399 1.47262 1.74331 1.22408 0.88489 0.91258 0.99345 1.20965 0.90469 0.81208 0.77516 1.90785 1.72379 1.31629 1.51244 1.48577 1.06865 1.27762 1.51311 1.22820 0.97798 0.84085 0.98234 1.22821 0.91797 0.96569 1.04475 1.22598 1.00202 0.93537 0.99489 1.21543 0.81258 0.95822 0.98028 0.93389 1.20987 0.84316 0.96267 0.96182 1.42321 1.01076 1.19780 1.74823 1.19533 0.90252 0.96265 1.32245 0.91766 1.25573 0.96724 1.01139 1.02936 1.69796 1.05222 1.32456 1.53965 0.85115 0.77870 0.78676 0.77925 1.21674 1.21126 1.19597 1.71909 1.17940 1.02200 1.30065 0.92835 0.88736 0.92389 0.88172 0.87833 0.85056 0.84477 0.85628 0.84719 0.85856 0.89556 0.89505 0.86874 0.91111 0.90666 0.96533 0.97790 0.79045 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 71.98 0.71 -0.87 16 2 C -0.04 -0.60 6.56 29.85 0.20 -0.40 16 3 C 0.16 3.81 7.47 138.46 1.03 4.85 16 4 N -0.40 -10.26 12.16 -60.29 -0.73 -11.00 16 5 O 0.08 1.84 11.31 74.84 0.85 2.68 16 6 C 0.19 3.82 8.14 88.38 0.72 4.54 16 7 C 0.16 1.78 6.56 71.24 0.47 2.25 16 8 O -0.40 -8.72 9.86 -129.94 -1.28 -10.00 16 9 C 0.06 0.94 5.35 71.24 0.38 1.32 16 10 C 0.51 15.06 7.74 87.66 0.68 15.74 16 11 O -0.58 -25.90 15.28 16.01 0.24 -25.65 16 12 N -0.61 -15.92 3.07 -788.03 -2.42 -18.33 16 13 C 0.09 1.18 6.74 86.86 0.59 1.76 16 14 C -0.12 -1.71 7.09 31.99 0.23 -1.48 16 15 C -0.12 -3.23 6.11 31.78 0.19 -3.04 16 16 C 0.14 4.84 2.97 45.34 0.13 4.98 16 17 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 18 C 0.15 7.01 5.66 86.38 0.49 7.50 16 19 N -0.74 -40.93 5.46 -343.46 -1.88 -42.81 16 20 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 21 H 0.06 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 23 N -0.96 -60.78 13.06 21.65 0.28 -60.50 16 24 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 25 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 28 N -0.49 -11.74 11.55 -303.18 -3.50 -15.24 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.14 0.69 7.95 -2.39 -0.02 0.67 16 38 H 0.12 0.46 7.47 -2.38 -0.02 0.44 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 2.08 7.77 -2.38 -0.02 2.06 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.02 0.77 8.02 -2.38 -0.02 0.75 16 45 H 0.00 0.22 6.54 -2.39 -0.02 0.20 16 46 H 0.38 21.45 7.47 -92.71 -0.69 20.76 16 47 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -94.25 395.61 1.01 -93.24 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.29 Total: 18.11 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 7.13 Total: 18.83 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -8.24 Total: -147.87 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.19 Total: -32.97 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -94.25 1.01 -93.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499941317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.708 kcal (2) G-P(sol) polarization free energy of solvation -94.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds