Wall clock time and date at job start Tue Mar 31 2020 21:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47385 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46498 * 55.00081 * 5 4 3 7 7 C 1.52994 * 109.47422 * 175.00099 * 5 4 3 8 8 N 1.46498 * 109.47146 * 175.00230 * 7 5 4 9 9 C 1.36938 * 119.99918 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00133 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00245 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00308 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46871 * 60.00339 * 13 11 9 15 15 H 1.48499 * 109.46971 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47059 * 300.00527 * 13 11 9 17 17 N 1.46495 * 109.47087 * 295.00753 * 5 4 3 18 18 C 1.34774 * 120.00590 * 84.99599 * 17 5 4 19 19 O 1.21275 * 119.99841 * 359.97438 * 18 17 5 20 20 C 1.50697 * 120.00145 * 180.02562 * 18 17 5 21 21 N 1.46497 * 109.47347 * 179.97438 * 20 18 17 22 22 C 1.36156 * 119.85669 * 270.02049 * 21 20 18 23 23 C 1.35539 * 119.26473 * 180.02562 * 22 21 20 24 24 C 1.40741 * 118.99822 * 359.96522 * 23 22 21 25 25 O 1.35154 * 120.16611 * 180.29211 * 24 23 22 26 26 N 1.32434 * 119.66600 * 0.02562 * 24 23 22 27 27 C 1.33264 * 120.73152 * 0.02562 * 26 24 23 28 28 O 1.21976 * 119.47840 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47284 * 299.99728 * 1 2 3 30 30 H 1.08999 * 109.47242 * 59.99664 * 1 2 3 31 31 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46804 * 240.00071 * 2 1 3 33 33 H 1.08999 * 109.47242 * 120.00336 * 2 1 3 34 34 H 1.09003 * 109.47198 * 60.00312 * 3 2 1 35 35 H 1.08999 * 109.47312 * 300.00293 * 3 2 1 36 36 H 1.09001 * 109.47284 * 60.00272 * 4 3 2 37 37 H 1.08999 * 109.47242 * 300.00336 * 4 3 2 38 38 H 1.09001 * 109.47428 * 295.00450 * 7 5 4 39 39 H 1.09003 * 109.47304 * 54.99637 * 7 5 4 40 40 H 0.96996 * 120.00056 * 359.97438 * 8 7 5 41 41 H 0.96990 * 119.99934 * 180.02562 * 12 11 9 42 42 H 0.97008 * 119.99671 * 264.99550 * 17 5 4 43 43 H 1.09005 * 109.47514 * 59.99709 * 20 18 17 44 44 H 1.09007 * 109.47272 * 299.99972 * 20 18 17 45 45 H 1.08005 * 120.36752 * 359.97438 * 22 21 20 46 46 H 1.08001 * 120.50375 * 179.97438 * 23 22 21 47 47 H 0.96699 * 114.00080 * 179.72466 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4234 0.8424 7 6 5.6048 2.8867 0.1250 8 7 6.1030 4.2593 0.0059 9 6 7.4469 4.5093 0.0866 10 1 8.1396 3.6947 0.2385 11 6 7.9191 5.8097 -0.0267 12 7 7.0749 6.8026 -0.2113 13 14 9.7523 6.1509 0.0841 14 1 10.4585 5.4174 -0.9969 15 1 9.9945 7.6083 -0.0660 16 1 10.2612 5.6982 1.4036 17 7 3.6918 3.5407 -1.2511 18 6 2.4745 4.1077 -1.3654 19 8 1.7002 4.0747 -0.4326 20 6 2.0750 4.7818 -2.6527 21 7 0.7162 5.3140 -2.5241 22 6 -0.3503 4.5385 -2.8632 23 6 -1.6022 5.0432 -2.7400 24 6 -1.7642 6.3574 -2.2632 25 8 -3.0021 6.8821 -2.1255 26 7 -0.6979 7.0753 -1.9450 27 6 0.5277 6.5675 -2.0718 28 8 1.4938 7.2488 -1.7717 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9329 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 5.8904 2.4795 1.0950 39 1 6.0351 2.2739 -0.6671 40 1 5.4810 4.9908 -0.1308 41 1 7.4048 7.7112 -0.2909 42 1 4.3110 3.5669 -1.9974 43 1 2.1057 4.0576 -3.4668 44 1 2.7664 5.5973 -2.8656 45 1 -0.2004 3.5328 -3.2272 46 1 -2.4625 4.4458 -3.0037 47 1 -3.0099 7.7881 -1.7875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506537777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:07 Heat of formation + Delta-G solvation = -60.625813 kcal Electronic energy + Delta-G solvation = -30148.792940 eV Core-core repulsion = 25946.972884 eV Total energy + Delta-G solvation = -4201.820056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92113 -39.85205 -38.75091 -36.87676 -36.51774 -34.98961 -34.59009 -33.58058 -31.71791 -31.25261 -30.40527 -28.36073 -27.05445 -24.97247 -24.21914 -23.49637 -22.31396 -21.20299 -20.83198 -20.22325 -19.88717 -18.29816 -17.71660 -17.49086 -16.97669 -16.22964 -15.85691 -15.75537 -15.38764 -14.89620 -14.86242 -14.68328 -14.32907 -14.10927 -13.91081 -13.68846 -13.58228 -13.39442 -13.24324 -12.84369 -12.79214 -12.29809 -12.19550 -12.03350 -11.93928 -11.39447 -11.12777 -10.98581 -10.89423 -10.82173 -10.80035 -10.45368 -10.43390 -10.39193 -10.05304 -9.91512 -9.73528 -9.72720 -8.92093 -8.75475 -8.68370 -6.96750 -5.75686 -3.07482 0.51161 1.58033 2.16167 2.67409 3.00055 3.29992 3.43375 3.47945 3.50035 3.78545 4.05416 4.29810 4.54395 4.54841 4.73695 4.79417 4.83630 4.95788 5.09839 5.10784 5.14784 5.28567 5.32745 5.37900 5.45346 5.55345 5.74493 5.78779 5.86138 5.89181 5.90491 5.96619 6.08351 6.12979 6.21020 6.25762 6.34403 6.42033 6.52920 6.63731 6.85077 6.85560 7.65774 7.67593 7.72453 8.14113 8.33144 8.40793 9.52293 10.07527 10.42357 11.45696 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.003544 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.733488 B = 7899.471966 C =10492.730628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.126 4.126 5 C 0.139 3.861 6 H 0.087 0.913 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.249 4.249 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.926 5.926 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.701 5.701 18 C 0.503 3.497 19 O -0.530 6.530 20 C 0.072 3.928 21 N -0.507 5.507 22 C 0.214 3.786 23 C -0.291 4.291 24 C 0.456 3.544 25 O -0.451 6.451 26 N -0.612 5.612 27 C 0.657 3.343 28 O -0.515 6.515 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.033 0.967 39 H 0.024 0.976 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.406 0.594 43 H 0.122 0.878 44 H 0.137 0.863 45 H 0.179 0.821 46 H 0.163 0.837 47 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.845 -12.344 -9.036 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.165 4.165 5 C 0.034 3.966 6 H 0.105 0.895 7 C 0.017 3.983 8 N -0.377 5.377 9 C -0.380 4.380 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.573 5.573 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.353 5.353 18 C 0.287 3.713 19 O -0.407 6.407 20 C -0.055 4.055 21 N -0.223 5.223 22 C 0.078 3.922 23 C -0.317 4.317 24 C 0.253 3.747 25 O -0.246 6.246 26 N -0.368 5.368 27 C 0.358 3.642 28 O -0.387 6.387 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.241 0.759 43 H 0.139 0.861 44 H 0.155 0.845 45 H 0.197 0.803 46 H 0.180 0.820 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -19.650 -11.577 -8.013 24.174 hybrid contribution 1.218 0.301 -0.321 1.295 sum -18.432 -11.276 -8.334 23.159 Atomic orbital electron populations 1.21736 0.96224 1.00907 1.01762 1.21579 0.95610 0.97667 1.01471 1.21649 0.94859 0.95298 1.02952 1.21977 0.95966 0.96235 1.02332 1.21343 0.96263 0.92311 0.86649 0.89468 1.20950 0.89003 0.89526 0.98814 1.42352 1.05462 1.01925 1.87927 1.19130 0.83563 0.92452 1.42881 0.91241 1.24779 0.97640 0.95687 1.02491 1.69664 1.32968 0.99112 1.55602 0.86282 0.85158 0.76955 0.77811 1.21267 1.21663 1.21272 1.45845 1.15402 1.56556 1.17481 1.20390 0.82834 0.78692 0.89397 1.90740 1.51631 1.58544 1.39744 1.21886 0.83600 1.02084 0.97889 1.46044 1.07467 1.14766 1.54055 1.22272 0.85901 0.96135 0.87938 1.20522 0.97820 0.96123 1.17282 1.20416 0.84402 0.88649 0.81183 1.84962 1.23265 1.36284 1.80089 1.69677 0.97966 1.36065 1.33120 1.17311 0.87955 0.79500 0.79415 1.91112 1.38659 1.57843 1.51076 0.92816 0.93084 0.93249 0.92558 0.92355 0.91579 0.92187 0.91854 0.91028 0.94950 0.95816 0.77902 0.93279 0.75946 0.86051 0.84495 0.80349 0.81988 0.72688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.13 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.11 -1.32 3.82 -26.73 -0.10 -1.42 16 4 C -0.13 -1.55 4.89 -26.73 -0.13 -1.68 16 5 C 0.14 2.18 2.42 -67.93 -0.16 2.02 16 6 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 7 C 0.15 2.73 5.82 -4.05 -0.02 2.70 16 8 N -0.73 -18.04 5.43 -59.91 -0.33 -18.36 16 9 C -0.25 -6.88 9.99 -15.06 -0.15 -7.03 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 12 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 13 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.70 -10.04 4.47 -53.81 -0.24 -10.28 16 18 C 0.50 7.34 6.47 -10.99 -0.07 7.26 16 19 O -0.53 -9.37 13.57 5.56 0.08 -9.30 16 20 C 0.07 0.81 5.83 -5.20 -0.03 0.78 16 21 N -0.51 -6.29 2.08 -123.16 -0.26 -6.55 16 22 C 0.21 1.70 10.40 -16.60 -0.17 1.53 16 23 C -0.29 -2.33 10.03 -39.60 -0.40 -2.73 16 24 C 0.46 4.94 7.91 -16.35 -0.13 4.81 16 25 O -0.45 -3.60 13.55 -17.16 -0.23 -3.83 16 26 N -0.61 -9.35 10.40 -16.72 -0.17 -9.53 16 27 C 0.66 11.36 8.34 -88.43 -0.74 10.62 16 28 O -0.51 -11.49 16.72 4.94 0.08 -11.40 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 35 H 0.06 0.74 5.65 -51.93 -0.29 0.44 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.39 10.37 7.33 -40.82 -0.30 10.07 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.41 5.34 8.60 -40.82 -0.35 4.99 16 43 H 0.12 0.70 8.03 -51.93 -0.42 0.28 16 44 H 0.14 1.80 7.38 -51.93 -0.38 1.42 16 45 H 0.18 0.57 8.06 -52.48 -0.42 0.15 16 46 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 47 H 0.42 2.01 8.98 45.56 0.41 2.42 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -39.75 394.34 -7.75 -47.51 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.33 Total: 11.97 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -1.99 Total: 14.17 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -0.27 Total: -72.48 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.07 Total: -24.53 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.75 -7.75 -47.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506537777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.119 kcal (2) G-P(sol) polarization free energy of solvation -39.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds