Wall clock time and date at job start Tue Mar 31 2020 21:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47172 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47385 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46498 * 55.00081 * 5 4 3 7 7 C 1.52994 * 109.47422 * 175.00099 * 5 4 3 8 8 N 1.46498 * 109.47146 * 175.00230 * 7 5 4 9 9 C 1.36938 * 119.99918 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00133 * 359.97438 * 9 8 7 11 11 C 1.38813 * 120.00245 * 179.97438 * 9 8 7 12 12 N 1.31623 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00308 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46871 * 60.00339 * 13 11 9 15 15 H 1.48499 * 109.46971 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47059 * 300.00527 * 13 11 9 17 17 N 1.46495 * 109.47087 * 295.00753 * 5 4 3 18 18 C 1.34774 * 120.00590 * 84.99599 * 17 5 4 19 19 O 1.21275 * 119.99841 * 359.97438 * 18 17 5 20 20 C 1.50697 * 120.00145 * 180.02562 * 18 17 5 21 21 N 1.46497 * 109.47347 * 179.97438 * 20 18 17 22 22 C 1.36156 * 119.85669 * 270.02049 * 21 20 18 23 23 C 1.35539 * 119.26473 * 180.02562 * 22 21 20 24 24 C 1.40741 * 118.99822 * 359.96522 * 23 22 21 25 25 O 1.35154 * 120.16611 * 180.29211 * 24 23 22 26 26 N 1.32434 * 119.66600 * 0.02562 * 24 23 22 27 27 C 1.33264 * 120.73152 * 0.02562 * 26 24 23 28 28 O 1.21976 * 119.47840 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.47284 * 299.99728 * 1 2 3 30 30 H 1.08999 * 109.47242 * 59.99664 * 1 2 3 31 31 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46804 * 240.00071 * 2 1 3 33 33 H 1.08999 * 109.47242 * 120.00336 * 2 1 3 34 34 H 1.09003 * 109.47198 * 60.00312 * 3 2 1 35 35 H 1.08999 * 109.47312 * 300.00293 * 3 2 1 36 36 H 1.09001 * 109.47284 * 60.00272 * 4 3 2 37 37 H 1.08999 * 109.47242 * 300.00336 * 4 3 2 38 38 H 1.09001 * 109.47428 * 295.00450 * 7 5 4 39 39 H 1.09003 * 109.47304 * 54.99637 * 7 5 4 40 40 H 0.96996 * 120.00056 * 359.97438 * 8 7 5 41 41 H 0.96990 * 119.99934 * 180.02562 * 12 11 9 42 42 H 0.97008 * 119.99671 * 264.99550 * 17 5 4 43 43 H 1.09005 * 109.47514 * 59.99709 * 20 18 17 44 44 H 1.09007 * 109.47272 * 299.99972 * 20 18 17 45 45 H 1.08005 * 120.36752 * 359.97438 * 22 21 20 46 46 H 1.08001 * 120.50375 * 179.97438 * 23 22 21 47 47 H 0.96699 * 114.00080 * 179.72466 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4234 0.8424 7 6 5.6048 2.8867 0.1250 8 7 6.1030 4.2593 0.0059 9 6 7.4469 4.5093 0.0866 10 1 8.1396 3.6947 0.2385 11 6 7.9191 5.8097 -0.0267 12 7 7.0749 6.8026 -0.2113 13 14 9.7523 6.1509 0.0841 14 1 10.4585 5.4174 -0.9969 15 1 9.9945 7.6083 -0.0660 16 1 10.2612 5.6982 1.4036 17 7 3.6918 3.5407 -1.2511 18 6 2.4745 4.1077 -1.3654 19 8 1.7002 4.0747 -0.4326 20 6 2.0750 4.7818 -2.6527 21 7 0.7162 5.3140 -2.5241 22 6 -0.3503 4.5385 -2.8632 23 6 -1.6022 5.0432 -2.7400 24 6 -1.7642 6.3574 -2.2632 25 8 -3.0021 6.8821 -2.1255 26 7 -0.6979 7.0753 -1.9450 27 6 0.5277 6.5675 -2.0718 28 8 1.4938 7.2488 -1.7717 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9329 0.9288 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 5.8904 2.4795 1.0950 39 1 6.0351 2.2739 -0.6671 40 1 5.4810 4.9908 -0.1308 41 1 7.4048 7.7112 -0.2909 42 1 4.3110 3.5669 -1.9974 43 1 2.1057 4.0576 -3.4668 44 1 2.7664 5.5973 -2.8656 45 1 -0.2004 3.5328 -3.2272 46 1 -2.4625 4.4458 -3.0037 47 1 -3.0099 7.7881 -1.7875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506537777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:06 Heat of formation + Delta-G solvation = -95.828900 kcal Electronic energy + Delta-G solvation = -30150.319461 eV Core-core repulsion = 25946.972884 eV Total energy + Delta-G solvation = -4203.346576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.89409 -40.99253 -39.63618 -38.10949 -37.67674 -36.25655 -35.53185 -35.12447 -33.16099 -32.34294 -31.75183 -29.35520 -28.43838 -25.92045 -25.71854 -24.49834 -23.74098 -22.41169 -21.76773 -21.43108 -20.75280 -19.32582 -19.11006 -18.55407 -18.40710 -17.32817 -16.92221 -16.89481 -16.71348 -16.29323 -15.85373 -15.59296 -15.46277 -15.25727 -15.15592 -14.82752 -14.73114 -14.47253 -14.28528 -14.21511 -13.93856 -13.52541 -13.23376 -13.12418 -13.04258 -12.86297 -12.76197 -12.49147 -12.18949 -12.02632 -11.98442 -11.85663 -11.80654 -11.40433 -11.39237 -11.31209 -10.98869 -10.95559 -10.84439 -9.96989 -9.65675 -9.02944 -7.94334 -5.25530 -0.27828 0.69772 1.24226 1.46183 1.49573 1.54448 1.56180 2.21433 2.28348 2.55198 2.75020 3.30225 3.39332 3.56431 3.63137 3.75304 3.84767 4.02386 4.10169 4.13513 4.23092 4.27579 4.33462 4.38806 4.45249 4.58292 4.61724 4.64841 4.87135 4.91952 4.97722 5.03005 5.12318 5.19014 5.21781 5.25067 5.34737 5.38977 5.44358 5.49281 5.58740 5.64592 6.15718 6.24310 6.51622 6.70059 7.07380 7.20246 7.31622 8.06652 8.28469 9.27846 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.003544 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.733488 B = 7899.471966 C =10492.730628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.115 4.115 5 C 0.149 3.851 6 H 0.047 0.953 7 C 0.145 3.855 8 N -0.745 5.745 9 C -0.245 4.245 10 H 0.082 0.918 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.974 3.026 14 H -0.271 1.271 15 H -0.302 1.302 16 H -0.280 1.280 17 N -0.698 5.698 18 C 0.499 3.501 19 O -0.565 6.565 20 C 0.077 3.923 21 N -0.508 5.508 22 C 0.217 3.783 23 C -0.283 4.283 24 C 0.453 3.547 25 O -0.440 6.440 26 N -0.660 5.660 27 C 0.646 3.354 28 O -0.595 6.595 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.048 0.952 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.413 0.587 43 H 0.190 0.810 44 H 0.113 0.887 45 H 0.239 0.761 46 H 0.205 0.795 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.864 -16.252 -11.081 28.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.139 4.139 4 C -0.154 4.154 5 C 0.044 3.956 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.388 5.388 9 C -0.377 4.377 10 H 0.100 0.900 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.196 1.196 15 H -0.228 1.228 16 H -0.206 1.206 17 N -0.349 5.349 18 C 0.285 3.715 19 O -0.445 6.445 20 C -0.049 4.049 21 N -0.223 5.223 22 C 0.083 3.917 23 C -0.308 4.308 24 C 0.255 3.745 25 O -0.236 6.236 26 N -0.419 5.419 27 C 0.348 3.652 28 O -0.473 6.473 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.203 0.797 41 H 0.057 0.943 42 H 0.249 0.751 43 H 0.207 0.793 44 H 0.131 0.869 45 H 0.255 0.745 46 H 0.222 0.778 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -20.740 -15.594 -10.088 27.840 hybrid contribution 1.357 1.424 0.345 1.997 sum -19.384 -14.170 -9.743 25.912 Atomic orbital electron populations 1.21735 0.95577 1.01790 1.01497 1.21540 0.96186 0.95803 1.02290 1.21530 0.94336 0.96692 1.01388 1.21901 0.96289 0.93482 1.03714 1.21104 0.93966 0.94349 0.86171 0.93505 1.21142 0.91071 0.86697 0.99283 1.42570 1.04490 1.03905 1.87856 1.19611 0.85037 0.92650 1.40394 0.90028 1.25619 1.01948 0.95721 1.03530 1.69863 1.34911 0.99064 1.58186 0.85202 0.80152 0.76059 0.78260 1.19633 1.22822 1.20596 1.45780 1.15616 1.56504 1.17029 1.20956 0.82345 0.78006 0.90182 1.90728 1.52693 1.59795 1.41239 1.22035 0.82780 1.02240 0.97842 1.45872 1.09103 1.13841 1.53441 1.23305 0.84425 0.97612 0.86332 1.21089 0.99408 0.94852 1.15499 1.20894 0.83996 0.89617 0.80017 1.84968 1.21693 1.37355 1.79626 1.69488 0.98545 1.38129 1.35743 1.17526 0.87730 0.80689 0.79272 1.91037 1.40852 1.60329 1.55129 0.94291 0.92202 0.91771 0.90791 0.92420 0.94890 0.92128 0.89412 0.90539 0.95000 0.93458 0.79669 0.94286 0.75103 0.79320 0.86917 0.74457 0.77780 0.71237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -2.00 5.93 30.59 0.18 -1.82 16 3 C -0.10 -2.27 3.82 30.59 0.12 -2.16 16 4 C -0.12 -2.61 4.89 30.59 0.15 -2.46 16 5 C 0.15 4.69 2.42 44.99 0.11 4.80 16 6 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 7 C 0.14 5.34 5.82 86.38 0.50 5.84 16 8 N -0.75 -37.28 5.43 -343.46 -1.87 -39.14 16 9 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 10 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 11 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 12 N -0.97 -61.86 13.06 21.65 0.28 -61.57 16 13 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 17 N -0.70 -19.68 4.47 -442.56 -1.98 -21.65 16 18 C 0.50 14.49 6.47 87.66 0.57 15.05 16 19 O -0.57 -20.44 13.57 -3.01 -0.04 -20.48 16 20 C 0.08 1.65 5.83 85.63 0.50 2.15 16 21 N -0.51 -12.14 2.08 -661.77 -1.38 -13.52 16 22 C 0.22 2.64 10.40 83.40 0.87 3.50 16 23 C -0.28 -3.55 10.03 22.26 0.22 -3.32 16 24 C 0.45 9.33 7.91 85.21 0.67 10.01 16 25 O -0.44 -6.37 13.55 -84.32 -1.14 -7.51 16 26 N -0.66 -21.03 10.40 -438.81 -4.56 -25.59 16 27 C 0.65 23.53 8.34 179.58 1.50 25.02 16 28 O -0.59 -29.00 16.72 -5.24 -0.09 -29.09 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.03 0.95 7.85 -2.39 -0.02 0.93 16 35 H 0.06 1.34 5.65 -2.39 -0.01 1.33 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.37 20.73 7.33 -92.71 -0.68 20.05 16 41 H 0.25 15.61 8.31 -92.72 -0.77 14.84 16 42 H 0.41 10.43 8.60 -92.70 -0.80 9.64 16 43 H 0.19 1.33 8.03 -2.38 -0.02 1.31 16 44 H 0.11 3.10 7.38 -2.38 -0.02 3.08 16 45 H 0.24 -0.08 8.06 -2.91 -0.02 -0.11 16 46 H 0.21 0.82 8.06 -2.91 -0.02 0.80 16 47 H 0.43 3.94 8.98 -74.06 -0.66 3.28 16 Total: -1.00 -95.50 394.34 -2.46 -97.97 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -1.12 Total: 33.44 kcal Atomic # 6 Polarization: 31.05 SS G_CDS: 7.41 Total: 38.45 kcal Atomic # 7 Polarization: -151.98 SS G_CDS: -9.50 Total: -161.49 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -1.27 Total: -57.09 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -95.50 -2.46 -97.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506537777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.140 kcal (2) G-P(sol) polarization free energy of solvation -95.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds